Wall clock time and date at job start Mon Mar 30 2020 00:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36940 * 119.99847 * 2 1 4 4 H 1.08001 * 120.00004 * 162.18823 * 3 2 1 5 5 C 1.38806 * 120.00211 * 341.91917 * 3 2 1 6 6 N 1.31621 * 119.99974 * 344.88655 * 5 3 2 7 7 Si 1.86800 * 120.00413 * 164.88828 * 5 3 2 8 8 H 1.48507 * 109.46812 * 89.99682 * 7 5 3 9 9 H 1.48497 * 109.47530 * 209.99924 * 7 5 3 10 10 H 1.48502 * 109.47138 * 329.99999 * 7 5 3 11 11 C 1.46500 * 120.00245 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.46848 * 270.00165 * 11 2 1 13 13 N 1.46500 * 109.46848 * 179.97438 * 12 11 2 14 14 C 1.34780 * 120.00235 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99304 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00231 * 179.97438 * 14 13 12 17 17 H 1.09001 * 115.55907 * 34.33382 * 16 14 13 18 18 C 1.53092 * 117.51118 * 248.60781 * 16 14 13 19 19 C 1.52555 * 117.50787 * 180.11057 * 16 14 13 20 20 C 1.53868 * 120.83050 * 357.25492 * 19 16 14 21 21 C 1.54980 * 104.06471 * 192.35070 * 20 19 16 22 22 C 1.54924 * 102.82039 * 37.56834 * 21 20 19 23 23 C 1.53486 * 121.08929 * 217.87803 * 19 16 14 24 24 H 1.09003 * 109.47252 * 84.99334 * 1 2 3 25 25 H 1.09001 * 109.47041 * 204.99227 * 1 2 3 26 26 H 1.08999 * 109.47558 * 324.99146 * 1 2 3 27 27 H 0.96998 * 120.00072 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.47127 * 30.00270 * 11 2 1 29 29 H 1.09003 * 109.46987 * 150.00115 * 11 2 1 30 30 H 1.09002 * 109.47130 * 299.99219 * 12 11 2 31 31 H 1.08992 * 109.47262 * 59.99690 * 12 11 2 32 32 H 0.96998 * 120.00146 * 359.97438 * 13 12 11 33 33 H 1.08999 * 117.50805 * 0.02562 * 18 16 14 34 34 H 1.09001 * 117.50704 * 145.08565 * 18 16 14 35 35 H 1.09002 * 110.50681 * 310.99872 * 20 19 16 36 36 H 1.09004 * 110.50806 * 73.69978 * 20 19 16 37 37 H 1.08998 * 110.74527 * 279.23381 * 21 20 19 38 38 H 1.09010 * 110.89953 * 155.97382 * 21 20 19 39 39 H 1.09003 * 110.48140 * 203.59391 * 22 21 20 40 40 H 1.09006 * 110.48175 * 80.96993 * 22 21 20 41 41 H 1.09007 * 110.06989 * 263.32071 * 23 19 16 42 42 H 1.08995 * 110.07109 * 24.84905 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1908 1.2084 0.2861 5 6 1.5070 2.3584 -0.3731 6 7 0.3527 2.3043 -1.0033 7 14 2.2803 4.0129 0.0191 8 1 3.1569 4.4286 -1.1053 9 1 1.2115 5.0253 0.2139 10 1 3.0875 3.9003 1.2605 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1845 -2.9800 1.4412 14 6 3.5218 -3.5639 2.6081 15 8 3.2189 -3.0390 3.6587 16 6 4.2743 -4.8696 2.6075 17 1 4.9891 -5.0000 1.7950 18 6 3.5324 -6.1136 3.1032 19 6 4.6248 -5.4814 3.9603 20 6 4.2757 -4.7525 5.2697 21 6 5.0671 -5.5267 6.3542 22 6 6.3942 -5.8696 5.6322 23 6 5.9660 -6.1931 4.1847 24 1 -0.3634 0.0897 -1.0238 25 1 -0.3633 -0.9314 0.4342 26 1 -0.3634 0.8417 0.5895 27 1 -0.0962 3.1236 -1.2643 28 1 1.6085 -2.0281 -0.5148 29 1 3.1499 -1.1381 -0.5143 30 1 3.0416 -0.9516 1.9559 31 1 1.5001 -1.8415 1.9555 32 1 3.4264 -3.4000 0.6010 33 1 2.4999 -5.9875 3.4293 34 1 3.7596 -7.0623 2.6171 35 1 4.6023 -3.7135 5.2271 36 1 3.2047 -4.8095 5.4646 37 1 4.5388 -6.4353 6.6429 38 1 5.2525 -4.8967 7.2243 39 1 6.8661 -6.7373 6.0933 40 1 7.0693 -5.0138 5.6481 41 1 5.8435 -7.2693 4.0625 42 1 6.7103 -5.8188 3.4819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713472671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:17 Heat of formation + Delta-G solvation = -21.606232 kcal Electronic energy + Delta-G solvation = -20100.581642 eV Core-core repulsion = 17080.659708 eV Total energy + Delta-G solvation = -3019.921934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31550 -39.20859 -37.80967 -35.68144 -35.06618 -33.27820 -30.01180 -29.58069 -27.97389 -26.71423 -25.62572 -24.07042 -22.38919 -21.57782 -21.28065 -19.75283 -18.79975 -17.97002 -17.16047 -16.66926 -16.48335 -16.24549 -15.80469 -15.49240 -15.12449 -15.03256 -14.47268 -14.23751 -14.18870 -13.76085 -13.34778 -13.08676 -13.06181 -12.78370 -12.70209 -12.53276 -12.18341 -12.00839 -11.95230 -11.94617 -11.84708 -11.74059 -11.39923 -11.24432 -10.89698 -10.67732 -10.43384 -10.04054 -8.91363 -7.87599 -5.32623 1.44118 1.46772 1.54393 1.56054 2.14836 2.51316 2.82742 3.26688 3.47224 3.65484 3.76340 3.86746 3.96475 4.06947 4.19798 4.29868 4.30564 4.36169 4.62019 4.63336 4.77172 4.77967 4.79158 4.90496 4.93735 5.02179 5.05379 5.09285 5.12364 5.12978 5.23981 5.32804 5.36960 5.45231 5.49145 5.54487 5.58192 5.68438 6.26621 6.63795 7.10134 7.32889 7.81581 8.22577 9.16579 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033401 B = 0.003375 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.099037 B = 8293.188829 C = 8700.043063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.618 5.618 3 C -0.268 4.268 4 H 0.072 0.928 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.280 1.280 9 H -0.292 1.292 10 H -0.275 1.275 11 C 0.148 3.852 12 C 0.117 3.883 13 N -0.710 5.710 14 C 0.529 3.471 15 O -0.583 6.583 16 C -0.186 4.186 17 H 0.151 0.849 18 C -0.125 4.125 19 C -0.103 4.103 20 C -0.080 4.080 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.083 4.083 24 H 0.009 0.991 25 H 0.029 0.971 26 H 0.018 0.982 27 H 0.249 0.751 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.415 0.585 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.881 -21.427 7.931 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.342 5.342 3 C -0.398 4.398 4 H 0.090 0.910 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.207 1.207 9 H -0.218 1.218 10 H -0.201 1.201 11 C 0.021 3.979 12 C -0.010 4.010 13 N -0.362 5.362 14 C 0.317 3.683 15 O -0.463 6.463 16 C -0.206 4.206 17 H 0.169 0.831 18 C -0.162 4.162 19 C -0.103 4.103 20 C -0.118 4.118 21 C -0.162 4.162 22 C -0.159 4.159 23 C -0.121 4.121 24 H 0.028 0.972 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.252 0.748 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.543 -20.895 8.586 24.929 hybrid contribution -0.132 1.504 -0.318 1.543 sum 10.411 -19.392 8.267 23.511 Atomic orbital electron populations 1.20594 0.82395 0.96008 0.97920 1.44074 1.02365 1.01595 1.86137 1.19540 0.95904 0.85975 1.38374 0.91020 1.25693 0.98341 1.01543 0.99230 1.70256 1.18683 1.26990 1.42470 0.85265 0.77284 0.79704 0.78148 1.20670 1.21811 1.20062 1.20940 0.96839 0.87541 0.92585 1.21816 0.94636 0.84191 1.00337 1.45851 1.57585 1.23625 1.09174 1.20434 0.78601 0.86168 0.83110 1.90679 1.56504 1.66413 1.32720 1.22353 1.04928 0.91480 1.01880 0.83143 1.23125 0.96666 0.95307 1.01139 1.21897 0.98007 1.00346 0.90083 1.21768 0.98960 0.98105 0.92944 1.22551 0.96475 1.00006 0.97192 1.22361 0.96724 1.01740 0.95088 1.21698 0.92749 1.00421 0.97199 0.97229 0.95274 0.96321 0.94142 0.91589 0.92220 0.94675 0.94139 0.74811 0.89721 0.84529 0.93232 0.93709 0.90625 0.91819 0.89695 0.92189 0.89223 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.87 8.97 127.77 1.15 10.02 16 2 N -0.62 -31.37 2.93 -726.94 -2.13 -33.50 16 3 C -0.27 -14.97 9.69 84.03 0.81 -14.16 16 4 H 0.07 3.89 7.88 -2.91 -0.02 3.87 16 5 C -0.05 -3.02 5.07 84.86 0.43 -2.59 16 6 N -0.94 -55.96 10.54 21.65 0.23 -55.74 16 7 Si 0.97 45.90 29.58 68.60 2.03 47.93 16 8 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 9 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 C 0.15 5.74 5.76 86.38 0.50 6.24 16 12 C 0.12 4.37 6.00 86.38 0.52 4.89 16 13 N -0.71 -20.14 5.56 -463.07 -2.57 -22.71 16 14 C 0.53 15.86 7.61 87.65 0.67 16.53 16 15 O -0.58 -22.80 13.70 -3.04 -0.04 -22.84 16 16 C -0.19 -3.73 6.06 -11.66 -0.07 -3.80 16 17 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.13 -2.08 9.94 30.48 0.30 -1.78 16 19 C -0.10 -1.99 2.45 -52.02 -0.13 -2.12 16 20 C -0.08 -1.98 4.77 31.56 0.15 -1.83 16 21 C -0.12 -2.23 6.91 31.93 0.22 -2.01 16 22 C -0.12 -1.75 6.84 31.72 0.22 -1.53 16 23 C -0.08 -1.14 6.55 31.23 0.20 -0.94 16 24 H 0.01 0.51 7.47 -2.39 -0.02 0.49 16 25 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 26 H 0.02 1.01 7.05 -2.39 -0.02 0.99 16 27 H 0.25 14.43 8.31 -92.71 -0.77 13.65 16 28 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 29 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 30 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.42 8.61 8.47 -92.71 -0.79 7.82 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.54 6.97 -2.39 -0.02 1.52 16 36 H 0.04 1.25 8.00 -2.39 -0.02 1.23 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.63 338.10 2.68 -67.94 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 0.20 Total: 11.98 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 4.97 Total: 6.92 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.47 Total: -111.94 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.04 Total: -22.84 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.63 2.68 -67.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713472671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.335 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds