Wall clock time and date at job start Mon Mar 30 2020 00:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00139 * 2 1 4 4 H 1.07996 * 120.00177 * 203.04636 * 3 2 1 5 5 C 1.38817 * 119.99649 * 23.04146 * 3 2 1 6 6 N 1.31618 * 119.99932 * 12.93545 * 5 3 2 7 7 Si 1.86797 * 119.99820 * 192.92811 * 5 3 2 8 8 H 1.48498 * 109.47368 * 60.00330 * 7 5 3 9 9 H 1.48503 * 109.46970 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47165 * 299.99926 * 7 5 3 11 11 C 1.46505 * 120.00296 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47016 * 89.99896 * 11 2 1 13 13 N 1.46496 * 109.46856 * 180.02562 * 12 11 2 14 14 C 1.34780 * 119.99930 * 179.97438 * 13 12 11 15 15 O 1.21288 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00337 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47365 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.64340 * 54.57819 * 17 16 14 19 19 C 1.52874 * 109.87251 * 294.25612 * 17 16 14 20 20 C 1.50067 * 110.22896 * 191.00011 * 19 17 16 21 21 C 1.29447 * 124.07835 * 16.69328 * 20 19 17 22 22 C 1.50069 * 124.07158 * 359.79443 * 21 20 19 23 23 C 1.53017 * 110.14865 * 17.12786 * 22 21 20 24 24 H 1.08997 * 109.47069 * 275.11928 * 1 2 3 25 25 H 1.08999 * 109.47581 * 35.12639 * 1 2 3 26 26 H 1.09000 * 109.46957 * 155.12107 * 1 2 3 27 27 H 0.96995 * 119.99864 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46728 * 330.00449 * 11 2 1 29 29 H 1.08999 * 109.47315 * 209.99761 * 11 2 1 30 30 H 1.08998 * 109.47306 * 60.00328 * 12 11 2 31 31 H 1.08999 * 109.47213 * 300.00571 * 12 11 2 32 32 H 0.96997 * 120.00783 * 0.02562 * 13 12 11 33 33 H 1.08998 * 109.46843 * 59.99862 * 16 14 13 34 34 H 1.08996 * 109.46619 * 300.00130 * 16 14 13 35 35 H 1.08999 * 109.45906 * 70.67945 * 19 17 16 36 36 H 1.08995 * 109.17205 * 311.14253 * 19 17 16 37 37 H 1.08002 * 117.96124 * 196.97821 * 20 19 17 38 38 H 1.07994 * 117.96474 * 179.81301 * 21 20 19 39 39 H 1.09004 * 109.35908 * 137.33651 * 22 21 20 40 40 H 1.09002 * 109.35310 * 256.92069 * 22 21 20 41 41 H 1.09003 * 109.64515 * 70.24730 * 23 22 21 42 42 H 1.08998 * 109.64526 * 190.88140 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5386 2.3401 0.4706 6 7 0.4117 2.2597 1.1458 7 14 2.3158 4.0073 0.1455 8 1 2.4196 4.2281 -1.3193 9 1 1.4741 5.0718 0.7486 10 1 3.6719 4.0476 0.7495 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4418 13 7 3.1846 -2.9800 -1.4412 14 6 3.5210 -3.5645 -2.6081 15 8 3.2181 -3.0395 -3.6587 16 6 4.2735 -4.8701 -2.6076 17 6 4.5286 -5.3124 -4.0499 18 1 5.0344 -4.5146 -4.5937 19 6 3.2016 -5.6347 -4.7370 20 6 3.4496 -6.3188 -6.0495 21 6 4.5753 -6.8648 -6.3815 22 6 5.7912 -6.8860 -5.5021 23 6 5.4010 -6.5740 -4.0558 24 1 -0.3633 0.0917 1.0235 25 1 -0.3634 0.8405 -0.5913 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0150 3.0661 1.4749 28 1 1.6084 -2.0282 0.5147 29 1 3.1500 -1.1381 0.5143 30 1 3.0416 -0.9516 -1.9560 31 1 1.5002 -1.8415 -1.9556 32 1 3.4265 -3.4000 -0.6010 33 1 3.6839 -5.6290 -2.0933 34 1 5.2260 -4.7402 -2.0939 35 1 2.6484 -4.7115 -4.9096 36 1 2.6150 -6.2900 -4.0932 37 1 2.6397 -6.3540 -6.7632 38 1 4.6439 -7.3339 -7.3518 39 1 6.2525 -7.8726 -5.5471 40 1 6.5039 -6.1397 -5.8531 41 1 4.8390 -7.4100 -3.6393 42 1 6.2993 -6.4010 -3.4631 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714557690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:04 Heat of formation + Delta-G solvation = -20.272529 kcal Electronic energy + Delta-G solvation = -19919.231392 eV Core-core repulsion = 16899.367292 eV Total energy + Delta-G solvation = -3019.864100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.89315 -38.22192 -36.03939 -34.12350 -32.89000 -31.31955 -30.87486 -28.69409 -26.84822 -25.82940 -23.55524 -23.06439 -21.40837 -20.66289 -19.85552 -18.09286 -16.90091 -16.53096 -16.19384 -15.59633 -15.29877 -14.74172 -14.39966 -14.05104 -13.97517 -13.43643 -13.26692 -12.94431 -12.78923 -12.47315 -12.38943 -12.30131 -12.12999 -11.66501 -11.16995 -10.88043 -10.83937 -10.81331 -10.68523 -10.60648 -10.34172 -10.27172 -9.97752 -9.91546 -9.50875 -9.06012 -8.65939 -8.55631 -6.79491 -5.74167 -3.22302 2.19838 2.88560 3.38811 3.44004 3.44788 3.49191 4.49682 4.50348 4.56911 4.69424 4.96686 5.03347 5.18181 5.22401 5.35203 5.39600 5.46549 5.53701 5.59360 5.63736 5.67642 5.70448 5.81801 5.83225 5.94040 6.04137 6.18786 6.26782 6.31512 6.55599 6.63218 6.66568 6.76971 6.86977 6.92453 7.36310 7.70641 7.79570 7.80132 8.37251 8.51302 9.21268 9.83710 10.31909 11.30694 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039222 B = 0.003061 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.716477 B = 9145.853631 C = 9291.821347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.726 5.726 14 C 0.505 3.495 15 O -0.542 6.542 16 C -0.137 4.137 17 C -0.071 4.071 18 H 0.080 0.920 19 C -0.094 4.094 20 C -0.143 4.143 21 C -0.170 4.170 22 C -0.089 4.089 23 C -0.116 4.116 24 H 0.033 0.967 25 H 0.042 0.958 26 H -0.001 1.001 27 H 0.254 0.746 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.396 0.604 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -19.486 -8.039 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.321 5.321 3 C -0.390 4.390 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.378 5.378 14 C 0.291 3.709 15 O -0.420 6.420 16 C -0.177 4.177 17 C -0.090 4.090 18 H 0.098 0.902 19 C -0.130 4.130 20 C -0.161 4.161 21 C -0.188 4.188 22 C -0.126 4.126 23 C -0.153 4.153 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.229 0.771 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.972 -18.918 -8.699 22.296 hybrid contribution 0.383 0.769 0.173 0.876 sum 8.355 -18.149 -8.526 21.723 Atomic orbital electron populations 1.20834 0.82335 0.95583 0.99593 1.43780 1.01941 1.00334 1.86005 1.19151 0.98365 0.85560 1.35904 0.91405 1.25033 0.97836 0.98619 0.97993 1.70059 1.19385 1.27427 1.38288 0.86310 0.78428 0.83596 0.78051 1.20962 1.21583 1.20874 1.20839 0.96661 0.89121 0.91840 1.22388 0.95612 0.83240 1.01919 1.46142 1.58355 1.25128 1.08134 1.20660 0.79725 0.86523 0.83967 1.90672 1.54830 1.65267 1.31194 1.21770 1.01354 0.95486 0.99131 1.20912 0.96628 0.97423 0.94007 0.90151 1.20615 0.97464 1.01046 0.93905 1.22126 0.97662 0.98193 0.98132 1.21987 0.95303 1.01681 0.99799 1.20409 0.96281 1.01545 0.94317 1.21680 0.99535 0.97690 0.96441 0.94874 0.93949 0.98289 0.93629 0.94164 0.93008 0.91693 0.92380 0.77084 0.89094 0.88971 0.88911 0.91484 0.88240 0.88383 0.91344 0.91050 0.91731 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.08 2.92 -181.12 -0.53 -15.61 16 3 C -0.26 -7.20 9.65 -15.06 -0.15 -7.35 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.55 10.71 55.49 0.59 -25.96 16 7 Si 0.91 22.03 29.57 -169.99 -5.03 17.01 16 8 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 C 0.14 2.85 5.76 -4.04 -0.02 2.82 16 12 C 0.09 1.73 6.00 -4.04 -0.02 1.71 16 13 N -0.73 -10.23 5.56 -60.29 -0.33 -10.57 16 14 C 0.51 7.24 7.59 -10.98 -0.08 7.15 16 15 O -0.54 -10.01 14.08 5.55 0.08 -9.93 16 16 C -0.14 -1.34 5.18 -27.88 -0.14 -1.48 16 17 C -0.07 -0.74 1.86 -90.48 -0.17 -0.91 16 18 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 19 C -0.09 -1.06 5.06 -28.25 -0.14 -1.20 16 20 C -0.14 -1.49 9.81 -35.90 -0.35 -1.84 16 21 C -0.17 -1.59 9.80 -35.90 -0.35 -1.94 16 22 C -0.09 -0.72 6.11 -28.18 -0.17 -0.90 16 23 C -0.12 -0.94 5.31 -26.52 -0.14 -1.08 16 24 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 25 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 26 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 27 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.40 4.28 8.47 -40.82 -0.35 3.93 16 33 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.30 6.30 -51.93 -0.33 0.98 16 36 H 0.07 0.69 8.07 -51.93 -0.42 0.28 16 37 H 0.10 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -31.94 337.34 -8.73 -40.66 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.29 Total: -0.23 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.30 Total: -0.46 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.27 Total: -52.13 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.94 -8.73 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714557690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.392 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds