Wall clock time and date at job start Mon Mar 30 2020 00:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00139 * 2 1 4 4 H 1.07996 * 120.00177 * 203.04636 * 3 2 1 5 5 C 1.38817 * 119.99649 * 23.04146 * 3 2 1 6 6 N 1.31618 * 119.99932 * 12.93545 * 5 3 2 7 7 Si 1.86797 * 119.99820 * 192.92811 * 5 3 2 8 8 H 1.48498 * 109.47368 * 60.00330 * 7 5 3 9 9 H 1.48503 * 109.46970 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47165 * 299.99926 * 7 5 3 11 11 C 1.46505 * 120.00296 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.47016 * 89.99896 * 11 2 1 13 13 N 1.46496 * 109.46856 * 180.02562 * 12 11 2 14 14 C 1.34780 * 119.99930 * 179.97438 * 13 12 11 15 15 O 1.21288 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00337 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47365 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.64340 * 54.57819 * 17 16 14 19 19 C 1.52874 * 109.87251 * 294.25612 * 17 16 14 20 20 C 1.50067 * 110.22896 * 191.00011 * 19 17 16 21 21 C 1.29447 * 124.07835 * 16.69328 * 20 19 17 22 22 C 1.50069 * 124.07158 * 359.79443 * 21 20 19 23 23 C 1.53017 * 110.14865 * 17.12786 * 22 21 20 24 24 H 1.08997 * 109.47069 * 275.11928 * 1 2 3 25 25 H 1.08999 * 109.47581 * 35.12639 * 1 2 3 26 26 H 1.09000 * 109.46957 * 155.12107 * 1 2 3 27 27 H 0.96995 * 119.99864 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46728 * 330.00449 * 11 2 1 29 29 H 1.08999 * 109.47315 * 209.99761 * 11 2 1 30 30 H 1.08998 * 109.47306 * 60.00328 * 12 11 2 31 31 H 1.08999 * 109.47213 * 300.00571 * 12 11 2 32 32 H 0.96997 * 120.00783 * 0.02562 * 13 12 11 33 33 H 1.08998 * 109.46843 * 59.99862 * 16 14 13 34 34 H 1.08996 * 109.46619 * 300.00130 * 16 14 13 35 35 H 1.08999 * 109.45906 * 70.67945 * 19 17 16 36 36 H 1.08995 * 109.17205 * 311.14253 * 19 17 16 37 37 H 1.08002 * 117.96124 * 196.97821 * 20 19 17 38 38 H 1.07994 * 117.96474 * 179.81301 * 21 20 19 39 39 H 1.09004 * 109.35908 * 137.33651 * 22 21 20 40 40 H 1.09002 * 109.35310 * 256.92069 * 22 21 20 41 41 H 1.09003 * 109.64515 * 70.24730 * 23 22 21 42 42 H 1.08998 * 109.64526 * 190.88140 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5386 2.3401 0.4706 6 7 0.4117 2.2597 1.1458 7 14 2.3158 4.0073 0.1455 8 1 2.4196 4.2281 -1.3193 9 1 1.4741 5.0718 0.7486 10 1 3.6719 4.0476 0.7495 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4418 13 7 3.1846 -2.9800 -1.4412 14 6 3.5210 -3.5645 -2.6081 15 8 3.2181 -3.0395 -3.6587 16 6 4.2735 -4.8701 -2.6076 17 6 4.5286 -5.3124 -4.0499 18 1 5.0344 -4.5146 -4.5937 19 6 3.2016 -5.6347 -4.7370 20 6 3.4496 -6.3188 -6.0495 21 6 4.5753 -6.8648 -6.3815 22 6 5.7912 -6.8860 -5.5021 23 6 5.4010 -6.5740 -4.0558 24 1 -0.3633 0.0917 1.0235 25 1 -0.3634 0.8405 -0.5913 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0150 3.0661 1.4749 28 1 1.6084 -2.0282 0.5147 29 1 3.1500 -1.1381 0.5143 30 1 3.0416 -0.9516 -1.9560 31 1 1.5002 -1.8415 -1.9556 32 1 3.4265 -3.4000 -0.6010 33 1 3.6839 -5.6290 -2.0933 34 1 5.2260 -4.7402 -2.0939 35 1 2.6484 -4.7115 -4.9096 36 1 2.6150 -6.2900 -4.0932 37 1 2.6397 -6.3540 -6.7632 38 1 4.6439 -7.3339 -7.3518 39 1 6.2525 -7.8726 -5.5471 40 1 6.5039 -6.1397 -5.8531 41 1 4.8390 -7.4100 -3.6393 42 1 6.2993 -6.4010 -3.4631 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714557690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:03 Heat of formation + Delta-G solvation = -40.013508 kcal Electronic energy + Delta-G solvation = -19920.087425 eV Core-core repulsion = 16899.367292 eV Total energy + Delta-G solvation = -3020.720133 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97422 -39.13614 -37.80841 -35.65396 -33.77679 -33.21678 -31.58107 -30.16453 -28.07861 -27.78907 -25.01950 -24.01113 -22.46892 -22.25856 -21.02409 -18.89891 -18.73874 -17.81304 -17.21581 -16.87949 -16.54400 -16.41804 -15.58444 -15.39663 -15.08770 -14.94710 -14.52588 -14.31003 -14.05937 -13.74747 -13.51591 -13.16832 -13.06122 -12.92401 -12.77285 -12.66104 -12.51505 -12.40626 -12.19416 -11.97146 -11.81135 -11.59913 -11.46690 -10.99819 -10.74143 -10.60357 -10.00964 -9.80890 -8.84490 -7.86118 -5.36570 1.43966 1.45110 1.48433 1.54645 1.75572 2.25924 2.53208 3.27801 3.69018 3.75183 3.84693 3.93495 4.14470 4.22607 4.29589 4.33433 4.47113 4.51758 4.61651 4.66540 4.77215 4.79825 4.81222 4.85924 4.97995 5.05529 5.07500 5.11396 5.16567 5.26073 5.32855 5.41746 5.53270 5.56936 5.61250 5.67789 5.81597 6.11260 6.29839 6.69359 7.11509 7.39872 7.82255 8.25079 9.16943 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039222 B = 0.003061 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.716477 B = 9145.853631 C = 9291.821347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.618 5.618 3 C -0.270 4.270 4 H 0.069 0.931 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.969 3.031 8 H -0.283 1.283 9 H -0.292 1.292 10 H -0.272 1.272 11 C 0.147 3.853 12 C 0.116 3.884 13 N -0.715 5.715 14 C 0.500 3.500 15 O -0.589 6.589 16 C -0.125 4.125 17 C -0.071 4.071 18 H 0.053 0.947 19 C -0.092 4.092 20 C -0.168 4.168 21 C -0.162 4.162 22 C -0.094 4.094 23 C -0.109 4.109 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.030 0.970 27 H 0.250 0.750 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.039 0.961 32 H 0.416 0.584 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 -21.606 -7.630 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.341 5.341 3 C -0.400 4.400 4 H 0.087 0.913 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.218 1.218 10 H -0.197 1.197 11 C 0.021 3.979 12 C -0.011 4.011 13 N -0.368 5.368 14 C 0.289 3.711 15 O -0.470 6.470 16 C -0.165 4.165 17 C -0.090 4.090 18 H 0.072 0.928 19 C -0.129 4.129 20 C -0.186 4.186 21 C -0.180 4.180 22 C -0.130 4.130 23 C -0.147 4.147 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.253 0.747 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.939 -21.093 -8.271 24.741 hybrid contribution -0.198 1.345 -0.023 1.360 sum 9.741 -19.748 -8.295 23.530 Atomic orbital electron populations 1.20591 0.82621 0.95919 0.97978 1.44030 1.02241 1.01632 1.86203 1.19464 0.98540 0.86885 1.35088 0.91303 1.25797 0.98584 1.01913 0.98307 1.70210 1.20685 1.27850 1.39491 0.85325 0.77922 0.79445 0.77663 1.20924 1.21775 1.19718 1.20955 0.96808 0.87526 0.92656 1.21783 0.94685 0.84527 1.00149 1.45938 1.57798 1.23636 1.09450 1.21574 0.79017 0.87629 0.82919 1.90670 1.56572 1.66778 1.32930 1.21811 1.02356 0.92984 0.99343 1.20894 0.96221 0.97927 0.93950 0.92819 1.20531 0.97910 0.99556 0.94876 1.22161 0.98551 0.99730 0.98179 1.22263 0.95169 1.00194 1.00382 1.20515 0.95655 1.02722 0.94156 1.21661 0.99828 0.96417 0.96760 0.96952 0.96873 0.95109 0.94108 0.91672 0.92264 0.94792 0.94227 0.74715 0.86183 0.86028 0.92549 0.90626 0.88391 0.87232 0.89292 0.91018 0.90659 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.71 8.98 127.77 1.15 9.86 16 2 N -0.62 -31.13 2.92 -726.93 -2.12 -33.26 16 3 C -0.27 -14.98 9.65 84.03 0.81 -14.17 16 4 H 0.07 3.73 7.86 -2.91 -0.02 3.70 16 5 C -0.05 -2.87 5.10 84.86 0.43 -2.44 16 6 N -0.94 -55.71 10.71 21.65 0.23 -55.48 16 7 Si 0.97 45.62 29.57 68.60 2.03 47.65 16 8 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 9 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 C 0.15 5.64 5.76 86.38 0.50 6.14 16 12 C 0.12 4.21 6.00 86.38 0.52 4.73 16 13 N -0.72 -18.91 5.56 -463.05 -2.57 -21.48 16 14 C 0.50 13.76 7.59 87.66 0.67 14.42 16 15 O -0.59 -22.23 14.08 -3.05 -0.04 -22.27 16 16 C -0.13 -2.07 5.18 29.85 0.15 -1.92 16 17 C -0.07 -1.36 1.86 -10.70 -0.02 -1.38 16 18 H 0.05 1.32 7.93 -2.39 -0.02 1.30 16 19 C -0.09 -2.05 5.06 29.61 0.15 -1.90 16 20 C -0.17 -3.45 9.81 27.03 0.27 -3.18 16 21 C -0.16 -2.77 9.80 27.03 0.27 -2.51 16 22 C -0.09 -1.27 6.11 29.66 0.18 -1.09 16 23 C -0.11 -1.41 5.31 30.73 0.16 -1.25 16 24 H 0.01 0.66 7.34 -2.39 -0.02 0.64 16 25 H 0.01 0.69 7.34 -2.39 -0.02 0.67 16 26 H 0.03 1.31 8.03 -2.39 -0.02 1.29 16 27 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 28 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 29 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 30 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.42 7.69 8.47 -92.71 -0.79 6.90 16 33 H 0.12 1.37 8.10 -2.39 -0.02 1.35 16 34 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.67 6.30 -2.39 -0.02 1.65 16 36 H 0.08 1.48 8.07 -2.39 -0.02 1.47 16 37 H 0.10 1.94 8.06 -2.91 -0.02 1.92 16 38 H 0.11 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -71.21 337.34 2.95 -68.27 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.19 Total: 11.26 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 5.23 Total: 5.31 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.46 Total: -110.22 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.04 Total: -22.27 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.21 2.95 -68.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714557690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.253 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds