Wall clock time and date at job start Mon Mar 30 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00056 * 2 1 4 4 C 1.52989 * 109.47119 * 125.00322 * 3 2 1 5 5 C 1.53001 * 109.47400 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47549 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99885 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99853 * 0.02562 * 8 6 5 10 10 C 1.46496 * 119.99675 * 180.02562 * 8 6 5 11 11 H 1.08993 * 110.78380 * 1.78609 * 10 8 6 12 12 C 1.55165 * 110.71696 * 125.02404 * 10 8 6 13 13 C 1.54915 * 101.57980 * 153.86336 * 12 10 8 14 14 N 1.47425 * 104.83334 * 322.99105 * 13 12 10 15 15 C 1.36936 * 125.64929 * 204.09758 * 14 13 12 16 16 H 1.08003 * 119.99909 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99697 * 0.03486 * 15 14 13 18 18 N 1.31617 * 120.00113 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99553 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47355 * 90.00138 * 19 17 15 21 21 H 1.48500 * 109.46856 * 210.00276 * 19 17 15 22 22 H 1.48497 * 109.47334 * 329.99825 * 19 17 15 23 23 C 1.47022 * 108.70334 * 24.12789 * 14 13 12 24 24 H 1.07999 * 119.99800 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99979 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99800 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47330 * 5.00209 * 3 2 1 28 28 H 1.09008 * 109.47035 * 245.00595 * 3 2 1 29 29 H 1.09000 * 109.47634 * 60.00252 * 4 3 2 30 30 H 1.09001 * 109.47757 * 299.99894 * 4 3 2 31 31 H 1.09004 * 109.47068 * 59.99876 * 5 4 3 32 32 H 1.09002 * 109.47435 * 300.00579 * 5 4 3 33 33 H 1.09005 * 109.47002 * 269.99697 * 9 8 6 34 34 H 1.08998 * 109.47222 * 29.99894 * 9 8 6 35 35 H 1.09001 * 109.47257 * 150.00097 * 9 8 6 36 36 H 1.08995 * 111.00547 * 271.93668 * 12 10 8 37 37 H 1.09001 * 111.00003 * 35.79247 * 12 10 8 38 38 H 1.08997 * 110.36462 * 204.15099 * 13 12 10 39 39 H 1.08999 * 110.46102 * 81.87572 * 13 12 10 40 40 H 0.97003 * 119.99386 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.88723 * 239.52626 * 23 14 13 42 42 H 1.08998 * 109.88661 * 118.35607 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1815 5 6 3.8006 2.6577 1.1812 6 6 4.7571 2.6855 2.3454 7 8 4.8207 1.7388 3.1007 8 7 5.5419 3.7625 2.5471 9 6 5.4647 4.9063 1.6351 10 6 6.4722 3.7892 3.6785 11 1 6.4288 2.8543 4.2370 12 6 7.9186 4.0723 3.1933 13 6 8.5483 4.7181 4.4528 14 7 7.4696 5.5356 5.0372 15 6 7.6438 6.6224 5.8519 16 1 6.7850 7.1566 6.2306 17 6 8.9244 7.0374 6.1909 18 7 9.9710 6.3868 5.7287 19 14 9.1620 8.5195 7.3028 20 1 9.1996 8.0747 8.7192 21 1 10.4401 9.1943 6.9618 22 1 8.0353 9.4677 7.1115 23 6 6.1757 4.9905 4.6009 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9315 29 1 3.7400 0.5065 1.0919 30 1 2.4774 1.2355 2.1130 31 1 3.0959 3.4846 1.2706 32 1 4.3583 2.7549 0.2497 33 1 6.1747 4.7692 0.8194 34 1 4.4556 4.9804 1.2298 35 1 5.7065 5.8204 2.1773 36 1 8.4309 3.1467 2.9312 37 1 7.9201 4.7689 2.3549 38 1 9.3931 5.3479 4.1741 39 1 8.8654 3.9491 5.1572 40 1 10.8658 6.6772 5.9654 41 1 5.6192 5.7504 4.0525 42 1 5.6017 4.6602 5.4666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715016712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:33 Heat of formation + Delta-G solvation = 2.642775 kcal Electronic energy + Delta-G solvation = -20244.695631 eV Core-core repulsion = 17225.825213 eV Total energy + Delta-G solvation = -3018.870418 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91357 -37.46901 -36.09644 -34.74797 -32.68231 -31.93801 -29.30552 -27.99428 -27.10904 -26.29929 -24.40743 -22.36750 -20.28260 -20.20484 -19.95676 -18.59781 -17.04139 -16.97840 -16.15174 -15.81239 -15.19624 -14.73180 -14.38723 -14.09513 -13.77740 -13.49193 -13.16558 -12.99990 -12.44786 -12.34000 -12.27532 -11.94668 -11.68796 -11.66949 -11.54858 -11.08506 -11.04373 -10.88349 -10.81986 -10.81398 -10.43351 -10.12323 -9.82189 -9.61835 -9.56899 -9.45391 -8.67260 -8.31732 -6.85910 -5.66923 -3.09336 2.03632 2.80475 3.20361 3.39312 3.44250 3.46031 4.47583 4.51597 4.61814 4.77127 4.99761 5.08928 5.16676 5.28446 5.36684 5.41315 5.44366 5.50443 5.55277 5.57343 5.64014 5.68907 5.76803 5.81792 5.93609 5.99348 6.18399 6.26829 6.35663 6.38960 6.52650 6.54974 6.57769 6.72456 7.01472 7.49157 7.60047 7.65429 7.83324 8.32594 8.38649 9.19798 9.80428 10.44860 11.36781 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.051669 B = 0.003227 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.778846 B = 8675.153918 C = 8801.985157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.138 4.138 6 C 0.509 3.491 7 O -0.547 6.547 8 N -0.602 5.602 9 C 0.075 3.925 10 C 0.125 3.875 11 H 0.102 0.898 12 C -0.151 4.151 13 C 0.153 3.847 14 N -0.603 5.603 15 C -0.222 4.222 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.922 5.922 19 Si 0.916 3.084 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.129 3.871 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.015 0.985 40 H 0.252 0.748 41 H 0.028 0.972 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.338 -7.193 -13.831 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.178 4.178 6 C 0.298 3.702 7 O -0.425 6.425 8 N -0.335 5.335 9 C -0.068 4.068 10 C 0.021 3.979 11 H 0.120 0.880 12 C -0.190 4.190 13 C 0.028 3.972 14 N -0.329 5.329 15 C -0.351 4.351 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.746 3.254 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.002 3.998 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.132 -7.547 -13.331 20.177 hybrid contribution 0.137 0.803 0.588 1.004 sum -12.995 -6.744 -12.743 19.410 Atomic orbital electron populations 1.23842 0.95991 1.01744 1.02094 1.22981 0.96022 0.98669 0.99044 1.20809 0.98224 0.95398 0.98866 1.21288 0.97645 0.96437 0.98428 1.21717 0.98222 1.00269 0.97622 1.20684 0.81016 0.82110 0.86431 1.90677 1.68587 1.35399 1.47806 1.47899 1.39724 1.17118 1.28726 1.21793 1.01408 0.90046 0.93599 1.22229 0.88642 1.00318 0.86676 0.87975 1.23358 0.94590 1.00181 1.00909 1.21940 0.93060 0.93376 0.88844 1.44446 0.99474 1.32100 1.56896 1.19072 0.92456 1.02674 1.20871 0.90473 1.24797 0.95332 0.99645 1.00876 1.69789 0.97486 1.41325 1.48483 0.86055 0.77169 0.81913 0.80245 1.21596 1.21634 1.20705 1.21531 0.90244 0.92944 0.95076 0.88658 0.88664 0.87382 0.91482 0.90931 0.91072 0.91079 0.89040 0.89047 0.92648 0.91421 0.89948 0.92158 0.91771 0.87306 0.96745 0.93675 0.95442 0.95790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 14.32 29.01 0.42 -1.10 16 2 C -0.15 -1.22 9.52 -36.03 -0.34 -1.56 16 3 C -0.10 -0.75 5.66 -27.89 -0.16 -0.91 16 4 C -0.10 -1.01 4.49 -26.74 -0.12 -1.13 16 5 C -0.14 -1.40 4.25 -27.88 -0.12 -1.52 16 6 C 0.51 7.69 7.67 -10.98 -0.08 7.61 16 7 O -0.55 -10.39 15.36 5.56 0.09 -10.30 16 8 N -0.60 -9.28 2.88 -171.84 -0.50 -9.77 16 9 C 0.07 0.89 8.87 59.85 0.53 1.42 16 10 C 0.12 2.37 3.36 -66.09 -0.22 2.15 16 11 H 0.10 2.12 7.00 -51.93 -0.36 1.75 16 12 C -0.15 -2.93 6.63 -24.57 -0.16 -3.09 16 13 C 0.15 3.75 5.89 -2.53 -0.01 3.73 16 14 N -0.60 -15.56 3.39 -170.07 -0.58 -16.14 16 15 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 16 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 19 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.13 2.78 6.79 -3.06 -0.02 2.76 16 24 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 25 H 0.09 0.63 8.06 -52.48 -0.42 0.21 16 26 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 27 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 28 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 0.77 7.40 -51.93 -0.38 0.39 16 32 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 33 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.07 0.60 6.44 -51.93 -0.33 0.26 16 35 H 0.08 1.12 6.43 -51.93 -0.33 0.79 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.18 7.10 -51.93 -0.37 0.81 16 38 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.03 0.57 6.29 -51.93 -0.33 0.24 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -31.85 335.16 -7.95 -39.80 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.00 Total: -0.94 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.55 Total: 1.58 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.51 Total: -52.18 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.85 -7.95 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715016712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.442 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds