Wall clock time and date at job start Mon Mar 30 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00056 * 2 1 4 4 C 1.52989 * 109.47119 * 125.00322 * 3 2 1 5 5 C 1.53001 * 109.47400 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47549 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99885 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00061 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99853 * 0.02562 * 8 6 5 10 10 C 1.46496 * 119.99675 * 180.02562 * 8 6 5 11 11 H 1.08993 * 110.78380 * 1.78609 * 10 8 6 12 12 C 1.55165 * 110.71696 * 125.02404 * 10 8 6 13 13 C 1.54915 * 101.57980 * 153.86336 * 12 10 8 14 14 N 1.47425 * 104.83334 * 322.99105 * 13 12 10 15 15 C 1.36936 * 125.64929 * 204.09758 * 14 13 12 16 16 H 1.08003 * 119.99909 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99697 * 0.03486 * 15 14 13 18 18 N 1.31617 * 120.00113 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99553 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47355 * 90.00138 * 19 17 15 21 21 H 1.48500 * 109.46856 * 210.00276 * 19 17 15 22 22 H 1.48497 * 109.47334 * 329.99825 * 19 17 15 23 23 C 1.47022 * 108.70334 * 24.12789 * 14 13 12 24 24 H 1.07999 * 119.99800 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.99979 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99800 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47330 * 5.00209 * 3 2 1 28 28 H 1.09008 * 109.47035 * 245.00595 * 3 2 1 29 29 H 1.09000 * 109.47634 * 60.00252 * 4 3 2 30 30 H 1.09001 * 109.47757 * 299.99894 * 4 3 2 31 31 H 1.09004 * 109.47068 * 59.99876 * 5 4 3 32 32 H 1.09002 * 109.47435 * 300.00579 * 5 4 3 33 33 H 1.09005 * 109.47002 * 269.99697 * 9 8 6 34 34 H 1.08998 * 109.47222 * 29.99894 * 9 8 6 35 35 H 1.09001 * 109.47257 * 150.00097 * 9 8 6 36 36 H 1.08995 * 111.00547 * 271.93668 * 12 10 8 37 37 H 1.09001 * 111.00003 * 35.79247 * 12 10 8 38 38 H 1.08997 * 110.36462 * 204.15099 * 13 12 10 39 39 H 1.08999 * 110.46102 * 81.87572 * 13 12 10 40 40 H 0.97003 * 119.99386 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.88723 * 239.52626 * 23 14 13 42 42 H 1.08998 * 109.88661 * 118.35607 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1815 5 6 3.8006 2.6577 1.1812 6 6 4.7571 2.6855 2.3454 7 8 4.8207 1.7388 3.1007 8 7 5.5419 3.7625 2.5471 9 6 5.4647 4.9063 1.6351 10 6 6.4722 3.7892 3.6785 11 1 6.4288 2.8543 4.2370 12 6 7.9186 4.0723 3.1933 13 6 8.5483 4.7181 4.4528 14 7 7.4696 5.5356 5.0372 15 6 7.6438 6.6224 5.8519 16 1 6.7850 7.1566 6.2306 17 6 8.9244 7.0374 6.1909 18 7 9.9710 6.3868 5.7287 19 14 9.1620 8.5195 7.3028 20 1 9.1996 8.0747 8.7192 21 1 10.4401 9.1943 6.9618 22 1 8.0353 9.4677 7.1115 23 6 6.1757 4.9905 4.6009 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9315 29 1 3.7400 0.5065 1.0919 30 1 2.4774 1.2355 2.1130 31 1 3.0959 3.4846 1.2706 32 1 4.3583 2.7549 0.2497 33 1 6.1747 4.7692 0.8194 34 1 4.4556 4.9804 1.2298 35 1 5.7065 5.8204 2.1773 36 1 8.4309 3.1467 2.9312 37 1 7.9201 4.7689 2.3549 38 1 9.3931 5.3479 4.1741 39 1 8.8654 3.9491 5.1572 40 1 10.8658 6.6772 5.9654 41 1 5.6192 5.7504 4.0525 42 1 5.6017 4.6602 5.4666 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715016712.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:33 Heat of formation + Delta-G solvation = -16.181088 kcal Electronic energy + Delta-G solvation = -20245.511895 eV Core-core repulsion = 17225.825213 eV Total energy + Delta-G solvation = -3019.686682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17934 -39.06141 -36.84673 -36.22672 -34.16552 -33.15758 -31.14626 -29.44504 -28.08446 -27.59984 -26.24793 -23.33192 -22.14189 -21.50624 -20.67739 -19.83423 -18.97837 -18.25713 -17.16702 -17.01863 -16.66761 -16.10342 -15.84277 -15.48155 -14.96676 -14.53401 -14.38587 -14.23834 -13.94723 -13.66372 -13.42037 -13.24225 -13.17245 -12.96608 -12.72239 -12.56770 -12.45619 -12.32582 -12.18138 -12.01778 -11.83560 -11.71087 -11.58902 -11.39460 -10.79856 -10.75438 -10.15526 -9.61721 -8.93879 -7.79417 -5.25538 1.44693 1.46883 1.49135 1.57782 1.65308 2.00573 2.49578 3.30797 3.55144 3.72119 3.88514 3.89091 3.96774 4.08930 4.22258 4.30431 4.35501 4.41555 4.57227 4.62451 4.65492 4.69983 4.75849 4.78889 4.84076 4.96820 4.97549 5.03960 5.08456 5.10981 5.26680 5.43450 5.43793 5.55585 5.59650 5.75351 5.81758 5.94254 6.26622 6.48448 7.07216 7.20469 7.73153 8.37135 9.22432 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.051669 B = 0.003227 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.778846 B = 8675.153918 C = 8801.985157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.088 4.088 4 C -0.097 4.097 5 C -0.127 4.127 6 C 0.503 3.497 7 O -0.594 6.594 8 N -0.603 5.603 9 C 0.069 3.931 10 C 0.139 3.861 11 H 0.079 0.921 12 C -0.130 4.130 13 C 0.156 3.844 14 N -0.622 5.622 15 C -0.241 4.241 16 H 0.081 0.919 17 C -0.065 4.065 18 N -0.949 5.949 19 Si 0.984 3.016 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.267 1.267 23 C 0.130 3.870 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.082 0.918 39 H -0.017 1.017 40 H 0.249 0.751 41 H 0.045 0.955 42 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.024 -6.205 -15.923 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.185 4.185 3 C -0.125 4.125 4 C -0.135 4.135 5 C -0.166 4.166 6 C 0.294 3.706 7 O -0.475 6.475 8 N -0.335 5.335 9 C -0.072 4.072 10 C 0.034 3.966 11 H 0.098 0.902 12 C -0.170 4.170 13 C 0.030 3.970 14 N -0.349 5.349 15 C -0.370 4.370 16 H 0.099 0.901 17 C -0.258 4.258 18 N -0.598 5.598 19 Si 0.811 3.189 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.192 1.192 23 C 0.004 3.996 24 H 0.122 0.878 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.001 0.999 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -14.857 -6.550 -15.459 22.419 hybrid contribution 0.615 0.446 1.258 1.469 sum -14.242 -6.104 -14.202 21.018 Atomic orbital electron populations 1.24016 0.95946 1.02504 1.01157 1.23103 0.96433 0.98997 0.99918 1.20754 0.97907 0.95545 0.98258 1.21227 0.97589 0.96117 0.98554 1.21777 0.97576 1.01020 0.96215 1.21660 0.80913 0.80968 0.87097 1.90663 1.69918 1.37163 1.49797 1.47954 1.38928 1.18572 1.28004 1.22063 1.04509 0.87645 0.92992 1.21739 0.89372 0.97937 0.87591 0.90245 1.23138 0.94397 1.00668 0.98751 1.21723 0.92734 0.92189 0.90331 1.44715 1.01301 1.31932 1.56921 1.19445 0.92826 1.03398 1.21306 0.90089 1.25664 0.95085 1.02528 1.02515 1.70031 0.97590 1.42697 1.49529 0.85005 0.77235 0.78700 0.77919 1.21667 1.21683 1.19169 1.21615 0.88561 0.94226 0.95233 0.87849 0.88080 0.87672 0.90257 0.89391 0.92747 0.93296 0.86250 0.85969 0.90738 0.87453 0.91732 0.90677 0.90056 0.90014 0.99876 0.94155 0.93740 0.97187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.65 14.32 67.78 0.97 -1.68 16 2 C -0.17 -2.44 9.52 25.64 0.24 -2.19 16 3 C -0.09 -1.12 5.66 29.84 0.17 -0.95 16 4 C -0.10 -1.78 4.49 30.59 0.14 -1.64 16 5 C -0.13 -2.10 4.25 29.85 0.13 -1.97 16 6 C 0.50 14.27 7.67 87.66 0.67 14.94 16 7 O -0.59 -22.63 15.36 -3.02 -0.05 -22.68 16 8 N -0.60 -17.30 2.88 -815.95 -2.35 -19.65 16 9 C 0.07 1.39 8.87 127.77 1.13 2.52 16 10 C 0.14 5.23 3.36 46.18 0.15 5.38 16 11 H 0.08 3.38 7.00 -2.39 -0.02 3.36 16 12 C -0.13 -4.99 6.63 31.99 0.21 -4.78 16 13 C 0.16 7.86 5.89 86.86 0.51 8.37 16 14 N -0.62 -32.74 3.39 -691.98 -2.35 -35.09 16 15 C -0.24 -13.63 10.27 84.03 0.86 -12.76 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 18 N -0.95 -56.62 10.09 21.65 0.22 -56.41 16 19 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.13 5.62 6.79 86.73 0.59 6.21 16 24 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 25 H 0.10 1.18 8.06 -2.91 -0.02 1.16 16 26 H 0.11 1.55 8.06 -2.91 -0.02 1.52 16 27 H 0.08 0.84 7.79 -2.38 -0.02 0.82 16 28 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 30 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.12 1.39 7.40 -2.38 -0.02 1.37 16 32 H 0.12 1.37 8.11 -2.39 -0.02 1.35 16 33 H 0.07 1.25 8.07 -2.38 -0.02 1.23 16 34 H 0.11 1.31 6.44 -2.39 -0.02 1.30 16 35 H 0.06 1.57 6.43 -2.39 -0.02 1.55 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.08 2.84 7.10 -2.39 -0.02 2.83 16 38 H 0.08 4.60 5.87 -2.39 -0.01 4.58 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.04 1.79 6.29 -2.39 -0.02 1.77 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -71.84 335.16 4.72 -67.12 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.97 Total: 10.93 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.25 Total: 8.20 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -4.48 Total: -111.14 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -71.84 4.72 -67.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715016712.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.935 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds