Wall clock time and date at job start Mon Mar 30 2020 00:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 120.00061 * 2 1 4 4 H 1.08004 * 120.00137 * 322.05171 * 3 2 1 5 5 C 1.38810 * 120.00203 * 142.04569 * 3 2 1 6 6 N 1.31622 * 120.00393 * 157.02580 * 5 3 2 7 7 Si 1.86802 * 119.99690 * 337.02132 * 5 3 2 8 8 H 1.48505 * 109.46862 * 95.68414 * 7 5 3 9 9 H 1.48499 * 109.47314 * 215.68024 * 7 5 3 10 10 H 1.48496 * 109.47551 * 335.68171 * 7 5 3 11 11 C 1.46502 * 120.00050 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47044 * 89.99750 * 11 2 1 13 13 N 1.46505 * 109.46728 * 180.02562 * 12 11 2 14 14 C 1.34782 * 119.99808 * 180.02562 * 13 12 11 15 15 O 1.21279 * 119.99971 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99591 * 179.97438 * 14 13 12 17 17 H 1.08995 * 109.61943 * 60.00279 * 16 14 13 18 18 C 1.53298 * 109.61732 * 299.63341 * 16 14 13 19 19 C 1.52770 * 108.64507 * 166.00507 * 18 16 14 20 20 C 1.52082 * 110.64353 * 54.61547 * 19 18 16 21 21 H 1.08992 * 114.26369 * 193.89012 * 20 19 18 22 22 C 1.52300 * 119.83918 * 49.66613 * 20 19 18 23 23 C 1.52067 * 120.01714 * 338.41228 * 20 19 18 24 24 H 1.08997 * 117.25520 * 215.56663 * 23 20 19 25 25 C 1.52708 * 120.52589 * 5.29750 * 23 20 19 26 26 H 1.08999 * 109.47396 * 265.65048 * 1 2 3 27 27 H 1.08997 * 109.47364 * 25.65155 * 1 2 3 28 28 H 1.08997 * 109.47387 * 145.65098 * 1 2 3 29 29 H 0.97000 * 119.99972 * 180.02562 * 6 5 3 30 30 H 1.09003 * 109.46866 * 210.00159 * 11 2 1 31 31 H 1.08994 * 109.46790 * 329.99357 * 11 2 1 32 32 H 1.09002 * 109.47261 * 299.99543 * 12 11 2 33 33 H 1.08998 * 109.47457 * 60.00612 * 12 11 2 34 34 H 0.97001 * 120.00272 * 359.97438 * 13 12 11 35 35 H 1.08994 * 109.61948 * 285.55905 * 18 16 14 36 36 H 1.08999 * 109.61913 * 46.10415 * 18 16 14 37 37 H 1.08996 * 109.11065 * 294.36905 * 19 18 16 38 38 H 1.09002 * 109.26687 * 174.95807 * 19 18 16 39 39 H 1.08999 * 117.53588 * 142.80585 * 22 20 19 40 40 H 1.08999 * 117.54216 * 357.55987 * 22 20 19 41 41 H 1.09007 * 109.35845 * 218.31674 * 25 23 20 42 42 H 1.09000 * 109.24914 * 98.65924 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7809 2.0224 -0.5752 5 6 3.3176 1.3130 0.7393 6 7 4.2044 2.2305 0.4164 7 14 3.6306 0.1821 2.1928 8 1 4.4682 -0.9640 1.7568 9 1 4.3371 0.9333 3.2613 10 1 2.3354 -0.3220 2.7158 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 7 3.1844 -2.9788 -1.4437 14 6 3.5217 -3.5618 -2.6112 15 8 3.2188 -3.0360 -3.6613 16 6 4.2752 -4.8669 -2.6116 17 1 3.6879 -5.6287 -2.0990 18 6 5.6193 -4.6855 -1.8971 19 6 6.2041 -6.0650 -1.5991 20 6 6.2969 -6.8942 -2.8706 21 1 6.4770 -7.9556 -2.7010 22 6 6.9399 -6.3006 -4.1171 23 6 5.4247 -6.5508 -4.0680 24 1 5.0528 -7.3806 -4.6690 25 6 4.5401 -5.3061 -4.0519 26 1 -0.3634 -0.0779 1.0247 27 1 -0.3634 0.9263 -0.4449 28 1 -0.3634 -0.8484 -0.5798 29 1 5.0207 2.3190 0.9328 30 1 3.1499 -1.1386 0.5134 31 1 1.6084 -2.0285 0.5130 32 1 1.5000 -1.8400 -1.9571 33 1 3.0415 -0.9500 -1.9568 34 1 3.4270 -3.3992 -0.6038 35 1 6.3038 -4.1324 -2.5401 36 1 5.4677 -4.1409 -0.9652 37 1 5.5628 -6.5771 -0.8818 38 1 7.2002 -5.9487 -1.1720 39 1 7.5404 -6.9644 -4.7391 40 1 7.2820 -5.2670 -4.0643 41 1 3.5923 -5.5300 -4.5414 42 1 5.0426 -4.5012 -4.5883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731774499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:34 Heat of formation + Delta-G solvation = -25.211691 kcal Electronic energy + Delta-G solvation = -20633.408604 eV Core-core repulsion = 17613.330325 eV Total energy + Delta-G solvation = -3020.078279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43167 -39.67656 -38.07885 -35.67271 -34.26454 -33.69649 -31.77128 -30.28033 -28.07444 -26.29355 -24.94954 -24.00452 -22.73846 -22.02554 -21.36623 -19.43919 -18.91522 -18.05685 -17.48089 -17.13384 -16.85147 -16.27977 -15.75575 -15.33091 -15.13321 -14.82440 -14.72068 -14.55184 -14.30007 -14.05302 -13.68495 -13.59173 -13.30362 -13.09436 -12.75689 -12.49488 -12.40815 -12.34307 -12.21734 -11.96898 -11.91955 -11.58420 -11.53804 -10.79466 -10.68446 -10.63803 -10.55594 -10.09675 -8.85626 -8.23596 -5.65015 1.27518 1.42241 1.54197 1.61171 2.13585 2.40209 2.84606 3.03520 3.42150 3.62364 3.75050 3.77827 3.98989 4.01348 4.09056 4.16665 4.17749 4.30858 4.42861 4.48676 4.57114 4.68881 4.69537 4.75318 4.89034 4.92221 4.97849 5.03449 5.09671 5.12636 5.13037 5.18212 5.26279 5.33591 5.35810 5.39444 5.44072 5.89390 6.12846 6.55222 6.92494 7.25082 7.56366 7.97133 8.96092 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025221 B = 0.004563 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.940595 B = 6134.403873 C = 6625.127662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.622 5.622 3 C -0.276 4.276 4 H 0.036 0.964 5 C -0.021 4.021 6 N -0.947 5.947 7 Si 0.949 3.051 8 H -0.261 1.261 9 H -0.307 1.307 10 H -0.254 1.254 11 C 0.130 3.870 12 C 0.116 3.884 13 N -0.715 5.715 14 C 0.508 3.492 15 O -0.591 6.591 16 C -0.093 4.093 17 H 0.127 0.873 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.130 4.130 21 H 0.118 0.882 22 C -0.192 4.192 23 C -0.151 4.151 24 H 0.116 0.884 25 C -0.068 4.068 26 H 0.025 0.975 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.265 0.735 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.413 0.587 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.852 -23.672 -1.776 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.347 5.347 3 C -0.405 4.405 4 H 0.053 0.947 5 C -0.218 4.218 6 N -0.590 5.590 7 Si 0.776 3.224 8 H -0.188 1.188 9 H -0.235 1.235 10 H -0.178 1.178 11 C 0.004 3.996 12 C -0.011 4.011 13 N -0.368 5.368 14 C 0.296 3.704 15 O -0.472 6.472 16 C -0.114 4.114 17 H 0.145 0.855 18 C -0.154 4.154 19 C -0.121 4.121 20 C -0.148 4.148 21 H 0.136 0.864 22 C -0.229 4.229 23 C -0.169 4.169 24 H 0.134 0.866 25 C -0.106 4.106 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.250 0.750 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.718 -23.186 -2.469 23.475 hybrid contribution 0.446 0.524 0.526 0.866 sum 3.164 -22.663 -1.943 22.965 Atomic orbital electron populations 1.21235 0.81813 1.00317 0.98902 1.44055 1.02545 1.01201 1.86870 1.18695 1.06612 0.91536 1.23687 0.94677 1.26201 0.96379 0.98853 1.00336 1.70038 1.09186 1.39119 1.40687 0.85772 0.78606 0.78435 0.79598 1.18759 1.23536 1.17762 1.21397 0.96699 0.88135 0.93377 1.21770 0.95228 0.84071 0.99996 1.45963 1.57802 1.23707 1.09281 1.21448 0.78656 0.87392 0.82933 1.90669 1.56706 1.66712 1.33086 1.21366 0.97250 0.93144 0.99645 0.85516 1.21644 0.94251 0.99200 1.00268 1.20875 1.02119 0.93021 0.96134 1.21939 1.02451 1.00799 0.89586 0.86386 1.23190 0.95516 1.01952 1.02225 1.22216 0.92120 0.99183 1.03406 0.86627 1.20766 0.99609 0.95947 0.94231 0.95698 0.94266 0.92332 0.92654 0.93818 0.89659 0.92417 0.95462 0.75034 0.92827 0.90612 0.89168 0.90220 0.87783 0.90086 0.91599 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.61 10.70 127.77 1.37 5.98 16 2 N -0.62 -29.04 2.47 -726.97 -1.79 -30.84 16 3 C -0.28 -15.84 9.88 84.03 0.83 -15.01 16 4 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 5 C -0.02 -1.21 5.29 84.86 0.45 -0.76 16 6 N -0.95 -59.41 13.97 21.65 0.30 -59.10 16 7 Si 0.95 44.07 25.10 68.60 1.72 45.79 16 8 H -0.26 -10.99 6.68 99.48 0.66 -10.33 16 9 H -0.31 -14.55 7.11 99.48 0.71 -13.85 16 10 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 11 C 0.13 5.11 4.65 86.38 0.40 5.52 16 12 C 0.12 4.52 6.00 86.38 0.52 5.04 16 13 N -0.72 -21.78 5.35 -463.05 -2.48 -24.25 16 14 C 0.51 16.06 7.16 87.66 0.63 16.69 16 15 O -0.59 -24.57 15.92 -3.02 -0.05 -24.61 16 16 C -0.09 -2.01 2.50 -11.48 -0.03 -2.04 16 17 H 0.13 2.05 8.05 -2.39 -0.02 2.03 16 18 C -0.12 -2.21 5.02 30.62 0.15 -2.06 16 19 C -0.08 -1.13 5.93 30.21 0.18 -0.95 16 20 C -0.13 -1.76 6.00 -11.64 -0.07 -1.83 16 21 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 22 C -0.19 -3.08 9.66 30.58 0.30 -2.79 16 23 C -0.15 -2.50 6.19 -10.98 -0.07 -2.57 16 24 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 25 C -0.07 -1.52 4.50 30.46 0.14 -1.39 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.04 1.52 8.00 -2.39 -0.02 1.51 16 28 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.04 1.86 3.38 -2.39 -0.01 1.85 16 31 H 0.09 2.69 8.07 -2.39 -0.02 2.67 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.41 9.57 7.85 -92.71 -0.73 8.84 16 35 H 0.05 1.21 7.13 -2.39 -0.02 1.20 16 36 H 0.08 1.41 7.29 -2.39 -0.02 1.39 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.54 7.28 -2.39 -0.02 1.53 16 41 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.05 1.34 7.84 -2.39 -0.02 1.32 16 Total: -1.00 -73.30 329.80 2.73 -70.58 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.23 Total: 18.60 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 4.79 Total: 3.83 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -3.97 Total: -114.19 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.61 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.72 Total: 45.79 kcal Total: -73.30 2.73 -70.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731774499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.367 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds