Wall clock time and date at job start Mon Mar 30 2020 00:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99841 * 2 1 4 4 H 1.08003 * 120.00355 * 201.92901 * 3 2 1 5 5 C 1.38812 * 119.99883 * 21.92919 * 3 2 1 6 6 N 1.31614 * 120.00145 * 11.28578 * 5 3 2 7 7 Si 1.86808 * 119.99948 * 191.28741 * 5 3 2 8 8 H 1.48500 * 109.46861 * 59.99774 * 7 5 3 9 9 H 1.48500 * 109.47195 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46818 * 300.00143 * 7 5 3 11 11 C 1.46497 * 119.99997 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47289 * 270.00022 * 11 2 1 13 13 N 1.46497 * 109.47289 * 179.97438 * 12 11 2 14 14 C 1.34774 * 119.99858 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00184 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99572 * 180.02562 * 14 13 12 17 17 H 1.08992 * 110.05638 * 23.15114 * 16 14 13 18 18 C 1.54390 * 110.07063 * 144.64460 * 16 14 13 19 19 C 1.54919 * 104.22796 * 142.83538 * 18 16 14 20 20 C 1.54994 * 102.81658 * 322.27620 * 19 18 16 21 21 C 1.53485 * 110.06942 * 261.66285 * 16 14 13 22 22 C 1.52574 * 121.04587 * 96.51356 * 21 16 14 23 23 C 1.52550 * 121.08676 * 24.80583 * 21 16 14 24 24 H 1.08993 * 109.47127 * 275.11318 * 1 2 3 25 25 H 1.08997 * 109.46941 * 35.11890 * 1 2 3 26 26 H 1.09005 * 109.46884 * 155.11284 * 1 2 3 27 27 H 0.97006 * 119.99833 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46890 * 150.00285 * 11 2 1 29 29 H 1.08999 * 109.47460 * 30.00255 * 11 2 1 30 30 H 1.09002 * 109.47024 * 59.99788 * 12 11 2 31 31 H 1.08999 * 109.47059 * 300.00478 * 12 11 2 32 32 H 0.96998 * 119.99834 * 0.02562 * 13 12 11 33 33 H 1.09006 * 110.47342 * 261.51972 * 18 16 14 34 34 H 1.09004 * 110.47798 * 24.01125 * 18 16 14 35 35 H 1.08995 * 110.74481 * 80.61478 * 19 18 16 36 36 H 1.09001 * 110.74327 * 203.76423 * 19 18 16 37 37 H 1.09009 * 110.50813 * 156.21963 * 20 19 18 38 38 H 1.08999 * 110.51670 * 278.79040 * 20 19 18 39 39 H 1.09004 * 117.51722 * 356.97596 * 22 21 16 40 40 H 1.09011 * 117.50642 * 142.06109 * 22 21 16 41 41 H 1.08997 * 117.51254 * 217.87930 * 23 21 16 42 42 H 1.09006 * 117.50971 * 2.92399 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1711 1.2199 -0.3493 5 6 1.5309 2.3446 0.4490 6 7 0.3767 2.2731 1.0774 7 14 2.3363 4.0053 0.1611 8 1 2.5017 4.2290 -1.2976 9 1 1.4809 5.0761 0.7328 10 1 3.6670 4.0308 0.8198 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1845 -2.9788 1.4438 14 6 3.5218 -3.5616 2.6113 15 8 3.2189 -3.0358 3.6614 16 6 4.2752 -4.8668 2.6118 17 1 4.8104 -4.9898 1.6703 18 6 5.2672 -4.9054 3.7942 19 6 5.2274 -6.3770 4.2767 20 6 3.7318 -6.7509 4.1166 21 6 3.3033 -6.0360 2.8218 22 6 2.7547 -6.8257 1.6373 23 6 1.8299 -5.9126 2.4462 24 1 -0.3633 0.0916 1.0235 25 1 -0.3633 0.8406 -0.5912 26 1 -0.3633 -0.9323 -0.4325 27 1 -0.0555 3.0827 1.3915 28 1 3.1500 -1.1385 -0.5133 29 1 1.6085 -2.0286 -0.5129 30 1 1.5001 -1.8398 1.9572 31 1 3.0415 -0.9499 1.9568 32 1 3.4270 -3.3991 0.6040 33 1 6.2703 -4.6409 3.4591 34 1 4.9413 -4.2327 4.5875 35 1 5.8528 -7.0075 3.6449 36 1 5.5370 -6.4499 5.3193 37 1 3.6168 -7.8300 4.0132 38 1 3.1537 -6.3859 4.9656 39 1 3.0388 -6.4967 0.6377 40 1 2.6346 -7.9020 1.7620 41 1 1.1014 -6.3882 3.1029 42 1 1.5055 -4.9826 1.9793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753053233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:25 Heat of formation + Delta-G solvation = -22.204498 kcal Electronic energy + Delta-G solvation = -20573.871345 eV Core-core repulsion = 17553.923468 eV Total energy + Delta-G solvation = -3019.947877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45822 -39.10207 -37.81450 -35.78080 -34.97365 -33.31477 -30.93114 -29.22450 -27.94572 -26.73097 -25.03964 -23.39406 -22.49647 -22.26461 -21.36736 -19.80906 -18.80696 -18.00367 -17.05975 -16.89994 -16.64453 -16.11221 -15.91877 -15.43855 -15.34228 -14.91349 -14.52300 -14.27956 -14.15017 -13.64129 -13.44597 -13.12725 -12.78965 -12.68128 -12.54168 -12.50484 -12.37906 -12.13356 -12.03064 -11.96143 -11.83586 -11.77061 -11.53068 -11.16292 -11.12129 -10.67889 -10.42179 -10.08252 -8.89134 -7.86464 -5.36387 1.45460 1.47752 1.54495 1.64233 2.15618 2.50711 2.86934 3.28940 3.39720 3.63915 3.72668 3.88154 3.92175 4.09496 4.20404 4.25774 4.31616 4.38572 4.48239 4.62635 4.67808 4.77965 4.80090 4.81384 4.92830 5.02130 5.03308 5.06387 5.13422 5.17136 5.18825 5.24229 5.28678 5.29962 5.44385 5.50855 5.60706 5.69868 6.28608 6.62351 7.10627 7.32109 7.81385 8.23723 9.17021 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032657 B = 0.003923 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.199226 B = 7136.569061 C = 7553.000997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.270 4.270 4 H 0.077 0.923 5 C -0.054 4.054 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.272 1.272 9 H -0.295 1.295 10 H -0.278 1.278 11 C 0.148 3.852 12 C 0.117 3.883 13 N -0.711 5.711 14 C 0.511 3.489 15 O -0.593 6.593 16 C -0.070 4.070 17 H 0.120 0.880 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.088 4.088 21 C -0.127 4.127 22 C -0.134 4.134 23 C -0.195 4.195 24 H -0.002 1.002 25 H 0.022 0.978 26 H 0.035 0.965 27 H 0.248 0.752 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.415 0.585 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.098 -21.990 -0.557 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.400 4.400 4 H 0.094 0.906 5 C -0.249 4.249 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.198 1.198 9 H -0.221 1.221 10 H -0.203 1.203 11 C 0.021 3.979 12 C -0.010 4.010 13 N -0.363 5.363 14 C 0.299 3.701 15 O -0.473 6.473 16 C -0.091 4.091 17 H 0.138 0.862 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.170 4.170 23 C -0.232 4.232 24 H 0.016 0.984 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.252 0.748 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.113 0.887 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.758 -21.454 0.201 23.173 hybrid contribution -0.200 1.539 0.096 1.555 sum 8.558 -19.915 0.297 21.678 Atomic orbital electron populations 1.20594 0.82445 0.96364 0.97504 1.44174 1.02362 1.01614 1.85661 1.19584 0.98197 0.86372 1.35826 0.90565 1.25869 0.98341 1.02181 0.98507 1.70250 1.18993 1.27593 1.41844 0.85275 0.77501 0.79139 0.78128 1.19778 1.22146 1.20347 1.21128 0.97113 0.87563 0.92121 1.21874 0.93998 0.84007 1.01146 1.46019 1.57597 1.23600 1.09090 1.21333 0.78859 0.86817 0.83059 1.90664 1.56738 1.66528 1.33409 1.21515 0.95835 0.88919 1.02878 0.86182 1.22391 0.98223 0.98757 0.96127 1.22432 0.95905 0.94358 1.02023 1.21915 0.96368 1.00127 0.94088 1.21640 0.94361 0.98012 0.98760 1.23162 1.00138 0.98486 0.95239 1.22978 0.93104 1.02154 1.04969 0.98390 0.95946 0.94639 0.94264 0.91673 0.90790 0.95314 0.95527 0.74845 0.89671 0.93072 0.88985 0.90624 0.89271 0.92972 0.87150 0.86508 0.88712 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.86 9.01 127.77 1.15 10.02 16 2 N -0.62 -31.06 2.93 -726.93 -2.13 -33.19 16 3 C -0.27 -14.96 9.68 84.03 0.81 -14.14 16 4 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 5 C -0.05 -3.09 5.14 84.86 0.44 -2.65 16 6 N -0.94 -57.27 10.55 21.65 0.23 -57.04 16 7 Si 0.97 45.81 29.57 68.60 2.03 47.84 16 8 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 9 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 C 0.15 5.70 5.82 86.38 0.50 6.20 16 12 C 0.12 4.72 6.00 86.38 0.52 5.24 16 13 N -0.71 -21.26 5.41 -463.07 -2.50 -23.76 16 14 C 0.51 16.45 5.51 87.66 0.48 16.93 16 15 O -0.59 -25.78 15.85 -3.03 -0.05 -25.83 16 16 C -0.07 -1.52 3.16 -10.90 -0.03 -1.55 16 17 H 0.12 1.84 8.11 -2.39 -0.02 1.82 16 18 C -0.12 -2.47 6.33 31.72 0.20 -2.26 16 19 C -0.11 -1.67 6.91 31.93 0.22 -1.45 16 20 C -0.09 -1.51 6.59 31.61 0.21 -1.30 16 21 C -0.13 -2.46 2.26 -51.98 -0.12 -2.57 16 22 C -0.13 -1.90 10.24 30.48 0.31 -1.59 16 23 C -0.19 -4.24 9.64 30.47 0.29 -3.94 16 24 H 0.00 -0.13 7.37 -2.39 -0.02 -0.15 16 25 H 0.02 1.20 7.22 -2.39 -0.02 1.18 16 26 H 0.04 1.48 7.84 -2.38 -0.02 1.46 16 27 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 28 H 0.06 2.31 8.03 -2.38 -0.02 2.29 16 29 H 0.07 2.40 7.86 -2.39 -0.02 2.38 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.41 8.80 8.45 -92.71 -0.78 8.02 16 33 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.05 1.45 6.97 -2.38 -0.02 1.43 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.12 8.11 -2.38 -0.02 1.10 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 1.96 7.18 -2.38 -0.02 1.94 16 Total: -1.00 -73.69 338.45 2.77 -70.91 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.21 Total: 14.16 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.99 Total: 6.91 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -4.40 Total: -113.99 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.83 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.69 2.77 -70.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753053233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.710 kcal (2) G-P(sol) polarization free energy of solvation -73.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds