Wall clock time and date at job start Mon Mar 30 2020 00:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36935 * 120.00170 * 2 1 4 4 H 1.08000 * 120.00337 * 197.10670 * 3 2 1 5 5 C 1.38811 * 119.99763 * 17.10627 * 3 2 1 6 6 N 1.31618 * 120.00366 * 15.32081 * 5 3 2 7 7 Si 1.86801 * 119.99825 * 195.32829 * 5 3 2 8 8 H 1.48501 * 109.47432 * 89.99538 * 7 5 3 9 9 H 1.48507 * 109.47114 * 209.99839 * 7 5 3 10 10 H 1.48501 * 109.47115 * 329.99468 * 7 5 3 11 11 C 1.46502 * 119.99818 * 179.72286 * 2 1 3 12 12 C 1.52993 * 109.47404 * 90.00049 * 11 2 1 13 13 N 1.46492 * 109.47645 * 179.97438 * 12 11 2 14 14 C 1.34774 * 120.00595 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99459 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00750 * 180.02562 * 14 13 12 17 17 H 1.09002 * 110.04989 * 337.13680 * 16 14 13 18 18 C 1.54376 * 110.07364 * 215.64558 * 16 14 13 19 19 C 1.54919 * 104.22816 * 217.21428 * 18 16 14 20 20 C 1.54991 * 102.81595 * 37.71840 * 19 18 16 21 21 C 1.53481 * 110.07099 * 98.61668 * 16 14 13 22 22 C 1.52557 * 121.08927 * 335.14799 * 21 16 14 23 23 C 1.52575 * 121.05063 * 263.43124 * 21 16 14 24 24 H 1.09007 * 109.47070 * 275.03012 * 1 2 3 25 25 H 1.09000 * 109.47143 * 35.02808 * 1 2 3 26 26 H 1.09001 * 109.47347 * 155.03669 * 1 2 3 27 27 H 0.96997 * 120.00195 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.46895 * 210.00320 * 11 2 1 29 29 H 1.09003 * 109.47527 * 329.99785 * 11 2 1 30 30 H 1.09001 * 109.47316 * 300.00013 * 12 11 2 31 31 H 1.09003 * 109.46994 * 59.99409 * 12 11 2 32 32 H 0.97004 * 120.00130 * 0.02562 * 13 12 11 33 33 H 1.08999 * 110.47892 * 335.90452 * 18 16 14 34 34 H 1.09006 * 110.47789 * 98.53146 * 18 16 14 35 35 H 1.09000 * 110.74971 * 156.05213 * 19 18 16 36 36 H 1.09003 * 110.74290 * 279.20879 * 19 18 16 37 37 H 1.09000 * 110.51014 * 81.07688 * 20 19 18 38 38 H 1.09002 * 110.51012 * 203.78262 * 20 19 18 39 39 H 1.08991 * 117.50864 * 357.03218 * 22 21 16 40 40 H 1.08996 * 117.50809 * 142.12068 * 22 21 16 41 41 H 1.09002 * 117.51405 * 217.94000 * 23 21 16 42 42 H 1.09000 * 117.51319 * 3.04051 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1939 1.2066 -0.2751 5 6 1.5017 2.3614 0.3536 6 7 0.3402 2.3127 0.9708 7 14 2.2780 4.0126 -0.0467 8 1 1.8265 4.4596 -1.3889 9 1 1.8679 5.0124 0.9720 10 1 3.7570 3.8786 -0.0412 11 6 2.1975 -1.2688 0.0061 12 6 2.4525 -1.7174 -1.4341 13 7 3.1854 -2.9858 -1.4280 14 6 3.5229 -3.5748 -2.5923 15 8 3.2194 -3.0549 -3.6452 16 6 4.2764 -4.8798 -2.5861 17 1 4.8074 -5.0003 -1.6418 18 6 5.2737 -4.9215 -3.7639 19 6 5.2350 -6.3940 -4.2436 20 6 3.7385 -6.7667 -4.0893 21 6 3.3055 -6.0496 -2.7973 22 6 1.8306 -5.9258 -2.4274 23 6 2.7528 -6.8371 -1.6131 24 1 -0.3633 0.0901 1.0238 25 1 -0.3633 0.8415 -0.5899 26 1 -0.3634 -0.9317 -0.4337 27 1 -0.1124 3.1341 1.2182 28 1 3.1498 -1.1359 0.5194 29 1 1.6084 -2.0259 0.5237 30 1 1.5001 -1.8503 -1.9474 31 1 3.0415 -0.9602 -1.9517 32 1 3.4279 -3.4018 -0.5860 33 1 4.9505 -4.2520 -4.5610 34 1 6.2753 -4.6570 -3.4249 35 1 5.5461 -6.4690 -5.2855 36 1 5.8597 -7.0232 -3.6094 37 1 3.1642 -6.4010 -4.9405 38 1 3.6224 -7.8454 -3.9842 39 1 1.5045 -4.9953 -1.9631 40 1 1.1048 -6.4029 -3.0858 41 1 2.6334 -7.9136 -1.7359 42 1 3.0330 -6.5058 -0.6132 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753053234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:27 Heat of formation + Delta-G solvation = -20.745617 kcal Electronic energy + Delta-G solvation = -20502.504333 eV Core-core repulsion = 17482.619718 eV Total energy + Delta-G solvation = -3019.884615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45854 -39.10683 -37.83436 -35.78852 -34.97276 -33.32299 -30.91670 -29.22240 -27.96155 -26.72885 -25.05108 -23.39529 -22.49180 -22.25777 -21.36196 -19.80684 -18.78467 -17.99067 -17.18878 -16.89567 -16.59505 -16.11689 -15.86919 -15.44845 -15.32210 -14.95951 -14.50944 -14.28903 -14.19923 -13.63412 -13.44055 -13.06564 -12.84473 -12.72893 -12.54565 -12.48207 -12.37772 -12.18949 -11.97836 -11.95070 -11.84846 -11.78274 -11.52711 -11.16166 -11.12720 -10.67360 -10.41772 -10.07975 -8.92764 -7.87376 -5.32053 1.44463 1.47529 1.55049 1.63895 2.14092 2.50884 2.86883 3.26851 3.39985 3.64401 3.71821 3.88413 3.91345 4.09177 4.18895 4.24329 4.31265 4.37448 4.48751 4.62593 4.68227 4.77244 4.78991 4.80403 4.93332 5.01417 5.02330 5.06351 5.11327 5.16965 5.19137 5.24196 5.28274 5.33389 5.45638 5.51502 5.57496 5.68540 6.26294 6.60835 7.10043 7.30159 7.81457 8.22368 9.16755 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034295 B = 0.003801 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.261309 B = 7365.189897 C = 7874.825728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.618 5.618 3 C -0.267 4.267 4 H 0.073 0.927 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.268 1.268 11 C 0.148 3.852 12 C 0.116 3.884 13 N -0.712 5.712 14 C 0.514 3.486 15 O -0.590 6.590 16 C -0.072 4.072 17 H 0.118 0.882 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.087 4.087 21 C -0.126 4.126 22 C -0.193 4.193 23 C -0.137 4.137 24 H 0.008 0.992 25 H 0.019 0.981 26 H 0.027 0.973 27 H 0.249 0.751 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.414 0.586 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.109 -22.110 -4.957 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.342 5.342 3 C -0.397 4.397 4 H 0.091 0.909 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.217 1.217 9 H -0.218 1.218 10 H -0.192 1.192 11 C 0.021 3.979 12 C -0.011 4.011 13 N -0.365 5.365 14 C 0.302 3.698 15 O -0.470 6.470 16 C -0.093 4.093 17 H 0.136 0.864 18 C -0.154 4.154 19 C -0.148 4.148 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.230 4.230 23 C -0.174 4.174 24 H 0.027 0.973 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.250 0.750 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.782 -21.581 -5.610 23.965 hybrid contribution -0.196 1.485 0.118 1.503 sum 8.586 -20.096 -5.492 22.533 Atomic orbital electron populations 1.20586 0.82398 0.95949 0.97862 1.44083 1.02359 1.01606 1.86115 1.19561 0.95560 0.85783 1.38756 0.90911 1.25670 0.98266 1.01441 0.99375 1.70259 1.18185 1.26827 1.43168 0.85259 0.78412 0.79763 0.76988 1.21689 1.21814 1.19230 1.20933 0.96834 0.87510 0.92582 1.21817 0.94624 0.84304 1.00338 1.45986 1.57613 1.23679 1.09174 1.21242 0.78839 0.86693 0.83020 1.90656 1.56669 1.66714 1.32933 1.21512 0.95863 0.89053 1.02866 0.86409 1.22383 0.98137 0.98719 0.96154 1.22438 0.95891 0.94454 1.02035 1.21916 0.96343 1.00060 0.94150 1.21639 0.94335 0.97980 0.98715 1.22982 0.93069 1.02122 1.04837 1.23159 1.00456 0.98543 0.95239 0.97321 0.96228 0.95428 0.94162 0.92160 0.91684 0.94279 0.94603 0.74964 0.92811 0.89719 0.90592 0.89156 0.92762 0.89410 0.90662 0.88616 0.86611 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.94 8.97 127.77 1.15 10.08 16 2 N -0.62 -31.26 2.93 -726.93 -2.13 -33.39 16 3 C -0.27 -14.83 9.70 84.03 0.82 -14.02 16 4 H 0.07 3.93 7.88 -2.91 -0.02 3.91 16 5 C -0.05 -2.99 5.07 84.86 0.43 -2.55 16 6 N -0.94 -55.90 10.50 21.65 0.23 -55.68 16 7 Si 0.97 45.84 29.58 68.60 2.03 47.87 16 8 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 9 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 C 0.15 5.73 5.76 86.38 0.50 6.23 16 12 C 0.12 4.32 6.00 86.38 0.52 4.84 16 13 N -0.71 -20.06 5.42 -463.09 -2.51 -22.57 16 14 C 0.51 15.44 5.51 87.66 0.48 15.92 16 15 O -0.59 -23.75 15.86 -3.04 -0.05 -23.80 16 16 C -0.07 -1.47 3.16 -10.91 -0.03 -1.50 16 17 H 0.12 1.73 8.10 -2.39 -0.02 1.71 16 18 C -0.12 -2.29 6.33 31.72 0.20 -2.09 16 19 C -0.11 -1.58 6.91 31.93 0.22 -1.36 16 20 C -0.09 -1.42 6.59 31.61 0.21 -1.21 16 21 C -0.13 -2.31 2.26 -51.97 -0.12 -2.43 16 22 C -0.19 -3.99 9.64 30.48 0.29 -3.69 16 23 C -0.14 -1.91 10.24 30.49 0.31 -1.60 16 24 H 0.01 0.46 7.49 -2.38 -0.02 0.44 16 25 H 0.02 1.07 6.99 -2.39 -0.02 1.05 16 26 H 0.03 1.19 8.04 -2.39 -0.02 1.17 16 27 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 29 H 0.06 2.21 8.07 -2.39 -0.02 2.19 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.41 8.53 8.44 -92.71 -0.78 7.75 16 33 H 0.05 1.42 6.98 -2.39 -0.02 1.40 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16 39 H 0.07 1.89 7.19 -2.39 -0.02 1.87 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -70.99 338.65 2.75 -68.24 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.20 Total: 12.69 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.97 Total: 6.63 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -4.41 Total: -111.64 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.05 Total: -23.80 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.99 2.75 -68.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753053234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.498 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds