Wall clock time and date at job start Mon Mar 30 2020 00:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 119.99828 * 2 1 4 4 O 1.21279 * 120.00472 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00020 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47238 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46947 * 179.97438 * 6 5 3 8 8 C 1.53000 * 117.50237 * 243.61786 * 7 6 5 9 9 C 1.52995 * 60.00159 * 252.51492 * 8 7 6 10 10 C 1.46496 * 120.00628 * 179.97438 * 2 1 3 11 11 H 1.09000 * 110.64952 * 178.31252 * 10 2 1 12 12 C 1.55162 * 110.71937 * 54.97642 * 10 2 1 13 13 C 1.54910 * 101.58119 * 277.13997 * 12 10 2 14 14 N 1.47423 * 104.83460 * 322.98983 * 13 12 10 15 15 C 1.36939 * 125.64880 * 204.09313 * 14 13 12 16 16 H 1.08001 * 119.99759 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99770 * 0.04129 * 15 14 13 18 18 N 1.31616 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99563 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47109 * 90.00015 * 19 17 15 21 21 H 1.48501 * 109.46869 * 209.99455 * 19 17 15 22 22 H 1.48497 * 109.47176 * 329.99598 * 19 17 15 23 23 C 1.47018 * 108.70167 * 24.12686 * 14 13 12 24 24 H 1.08997 * 109.47477 * 90.00366 * 1 2 3 25 25 H 1.09004 * 109.46971 * 209.99938 * 1 2 3 26 26 H 1.08993 * 109.47768 * 330.00002 * 1 2 3 27 27 H 1.09001 * 109.46953 * 299.99667 * 5 3 2 28 28 H 1.09000 * 109.47318 * 59.99264 * 5 3 2 29 29 H 1.09001 * 109.46832 * 299.99686 * 6 5 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 6 5 3 31 31 H 1.08999 * 115.55056 * 29.33202 * 7 6 5 32 32 H 1.09003 * 117.49258 * 0.02562 * 8 7 6 33 33 H 1.08997 * 117.50025 * 145.01855 * 8 7 6 34 34 H 1.09005 * 117.49412 * 252.50393 * 9 8 7 35 35 H 1.09000 * 117.50144 * 107.49460 * 9 8 7 36 36 H 1.09000 * 111.00397 * 35.21458 * 12 10 2 37 37 H 1.08996 * 111.00832 * 159.06475 * 12 10 2 38 38 H 1.09003 * 110.36549 * 204.14619 * 13 12 10 39 39 H 1.09002 * 110.45887 * 81.87421 * 13 12 10 40 40 H 0.97005 * 119.99354 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.88874 * 239.52447 * 23 14 13 42 42 H 1.09004 * 109.88598 * 118.35887 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3794 3.6353 -0.0002 7 6 1.6143 4.9602 -0.0002 8 6 1.7827 5.8733 -1.2163 9 6 2.4319 6.2481 0.1174 10 6 2.1976 -1.2686 0.0006 11 1 3.2727 -1.0916 -0.0295 12 6 1.7508 -2.1610 -1.1875 13 6 0.4720 -2.8226 -0.6159 14 7 0.7746 -3.0618 0.8070 15 6 0.1813 -4.0064 1.6013 16 1 0.4739 -4.1026 2.6364 17 6 -0.7961 -4.8405 1.0758 18 7 -1.1528 -4.7230 -0.1856 19 14 -1.6059 -6.1285 2.1596 20 1 -2.8060 -5.5442 2.8105 21 1 -2.0101 -7.2911 1.3288 22 1 -0.6455 -6.5742 3.2008 23 6 1.8183 -2.1177 1.2322 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 0.7583 2.5303 -0.8892 28 1 0.7588 2.5298 0.8907 29 1 3.0067 3.5776 0.8894 30 1 3.0054 3.5776 -0.8907 31 1 0.6370 4.9388 0.4819 32 1 2.4383 5.5297 -2.0166 33 1 0.9160 6.4525 -1.5346 34 1 1.9923 7.0741 0.6765 35 1 3.5149 6.1515 0.1947 36 1 1.5194 -1.5568 -2.0646 37 1 2.5078 -2.9101 -1.4198 38 1 0.2727 -3.7655 -1.1251 39 1 -0.3810 -2.1512 -0.7146 40 1 -1.8360 -5.3057 -0.5526 41 1 2.6910 -2.6652 1.5879 42 1 1.4350 -1.4728 2.0231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753432700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:27 Heat of formation + Delta-G solvation = 15.304464 kcal Electronic energy + Delta-G solvation = -20665.447447 eV Core-core repulsion = 17647.126081 eV Total energy + Delta-G solvation = -3018.321366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92879 -37.93956 -37.20019 -34.37049 -32.56689 -31.67748 -29.23164 -27.99807 -26.20215 -25.16325 -23.99818 -22.56349 -20.79268 -20.27450 -20.11683 -18.47671 -17.02160 -16.87928 -15.92647 -15.80324 -15.41357 -14.71829 -14.31847 -14.04058 -13.76406 -13.55291 -12.79352 -12.57999 -12.35695 -12.20282 -11.86988 -11.77916 -11.73072 -11.57116 -11.44051 -11.28471 -11.05603 -10.90399 -10.79644 -10.48470 -10.27267 -10.13313 -10.03073 -9.87441 -9.56119 -9.34527 -8.67616 -8.22121 -6.87286 -5.68961 -3.10891 2.88683 3.30670 3.37702 3.43281 3.44919 3.62028 4.44805 4.46859 4.69834 4.75781 4.80726 5.12926 5.18569 5.35916 5.42134 5.43562 5.44079 5.49188 5.54090 5.66568 5.72356 5.73906 5.84362 5.86508 5.91507 5.95339 6.04708 6.23591 6.26862 6.31573 6.38538 6.56798 6.60957 6.72474 7.06099 7.44911 7.59730 7.76879 7.82749 8.32221 8.46161 9.18449 9.78921 10.43542 11.34492 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040316 B = 0.003696 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.353762 B = 7574.908726 C = 7733.489513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.595 5.595 3 C 0.509 3.491 4 O -0.555 6.555 5 C -0.135 4.135 6 C -0.073 4.073 7 C -0.153 4.153 8 C -0.182 4.182 9 C -0.182 4.182 10 C 0.124 3.876 11 H 0.099 0.901 12 C -0.154 4.154 13 C 0.145 3.855 14 N -0.603 5.603 15 C -0.222 4.222 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.127 3.873 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.022 0.978 40 H 0.252 0.748 41 H 0.032 0.968 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 16.742 -1.891 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.327 5.327 3 C 0.298 3.702 4 O -0.434 6.434 5 C -0.175 4.175 6 C -0.111 4.111 7 C -0.171 4.171 8 C -0.219 4.219 9 C -0.219 4.219 10 C 0.021 3.979 11 H 0.117 0.883 12 C -0.194 4.194 13 C 0.020 3.980 14 N -0.330 5.330 15 C -0.351 4.351 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.000 4.000 24 H 0.072 0.928 25 H 0.120 0.880 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.339 16.550 -1.895 16.989 hybrid contribution -0.670 -0.650 0.552 1.084 sum 2.669 15.900 -1.344 16.178 Atomic orbital electron populations 1.22092 0.79188 1.04151 1.01913 1.47842 1.07323 1.05628 1.71862 1.20686 0.88009 0.85510 0.75999 1.90647 1.14113 1.87583 1.51027 1.21661 0.99390 0.92190 1.04229 1.20919 0.96576 0.90127 1.03443 1.22373 1.00714 0.91434 1.02552 1.23045 1.03183 1.03878 0.91822 1.22956 0.99660 0.98639 1.00673 1.22132 0.96472 0.82330 0.96995 0.88340 1.23340 1.01522 0.98244 0.96268 1.22121 0.90536 1.00673 0.84661 1.44550 1.42721 1.37699 1.07999 1.19077 1.14828 1.08364 0.92793 0.90528 1.24773 0.99411 0.99881 0.96504 1.69800 1.34012 1.41149 1.12085 0.86077 0.79280 0.81008 0.79153 1.21657 1.21677 1.20731 1.21639 0.92724 0.91419 0.94197 0.92797 0.88006 0.92149 0.88998 0.88993 0.90877 0.91150 0.87743 0.88769 0.89015 0.88976 0.88774 0.92120 0.91114 0.87713 0.96048 0.93740 0.95016 0.95598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 8.34 59.84 0.50 1.56 16 2 N -0.59 -9.93 2.82 -171.84 -0.49 -10.41 16 3 C 0.51 8.12 7.67 -10.98 -0.08 8.03 16 4 O -0.55 -10.57 15.35 5.56 0.09 -10.48 16 5 C -0.13 -1.55 4.21 -27.88 -0.12 -1.67 16 6 C -0.07 -0.81 4.79 -26.73 -0.13 -0.94 16 7 C -0.15 -1.38 5.74 -90.62 -0.52 -1.90 16 8 C -0.18 -1.51 10.18 -26.73 -0.27 -1.79 16 9 C -0.18 -1.51 10.25 -26.73 -0.27 -1.79 16 10 C 0.12 2.34 3.58 -66.09 -0.24 2.10 16 11 H 0.10 1.88 6.99 -51.93 -0.36 1.52 16 12 C -0.15 -2.97 6.53 -24.58 -0.16 -3.13 16 13 C 0.14 3.35 5.00 -2.53 -0.01 3.34 16 14 N -0.60 -14.93 2.97 -170.07 -0.50 -15.43 16 15 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 16 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -26.02 10.09 55.49 0.56 -25.46 16 19 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.13 2.70 6.24 -3.06 -0.02 2.68 16 24 H 0.05 0.77 7.99 -51.93 -0.41 0.36 16 25 H 0.10 1.92 5.19 -51.93 -0.27 1.65 16 26 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 27 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 28 H 0.09 0.93 7.40 -51.93 -0.38 0.55 16 29 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 30 H 0.07 0.85 7.83 -51.93 -0.41 0.44 16 31 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.11 2.79 5.87 -51.93 -0.31 2.48 16 39 H 0.02 0.51 5.54 -51.93 -0.29 0.22 16 40 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.56 8.04 -51.93 -0.42 0.14 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -30.04 329.01 -8.93 -38.97 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.94 Total: 1.29 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.58 Total: -0.08 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.43 Total: -51.30 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.04 -8.93 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753432700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.279 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds