Wall clock time and date at job start Mon Mar 30 2020 00:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34774 * 119.99828 * 2 1 4 4 O 1.21279 * 120.00472 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00020 * 0.02562 * 3 2 1 6 6 C 1.52997 * 109.47238 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.46947 * 179.97438 * 6 5 3 8 8 C 1.53000 * 117.50237 * 243.61786 * 7 6 5 9 9 C 1.52995 * 60.00159 * 252.51492 * 8 7 6 10 10 C 1.46496 * 120.00628 * 179.97438 * 2 1 3 11 11 H 1.09000 * 110.64952 * 178.31252 * 10 2 1 12 12 C 1.55162 * 110.71937 * 54.97642 * 10 2 1 13 13 C 1.54910 * 101.58119 * 277.13997 * 12 10 2 14 14 N 1.47423 * 104.83460 * 322.98983 * 13 12 10 15 15 C 1.36939 * 125.64880 * 204.09313 * 14 13 12 16 16 H 1.08001 * 119.99759 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99770 * 0.04129 * 15 14 13 18 18 N 1.31616 * 120.00093 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99563 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47109 * 90.00015 * 19 17 15 21 21 H 1.48501 * 109.46869 * 209.99455 * 19 17 15 22 22 H 1.48497 * 109.47176 * 329.99598 * 19 17 15 23 23 C 1.47018 * 108.70167 * 24.12686 * 14 13 12 24 24 H 1.08997 * 109.47477 * 90.00366 * 1 2 3 25 25 H 1.09004 * 109.46971 * 209.99938 * 1 2 3 26 26 H 1.08993 * 109.47768 * 330.00002 * 1 2 3 27 27 H 1.09001 * 109.46953 * 299.99667 * 5 3 2 28 28 H 1.09000 * 109.47318 * 59.99264 * 5 3 2 29 29 H 1.09001 * 109.46832 * 299.99686 * 6 5 3 30 30 H 1.09004 * 109.47261 * 59.99705 * 6 5 3 31 31 H 1.08999 * 115.55056 * 29.33202 * 7 6 5 32 32 H 1.09003 * 117.49258 * 0.02562 * 8 7 6 33 33 H 1.08997 * 117.50025 * 145.01855 * 8 7 6 34 34 H 1.09005 * 117.49412 * 252.50393 * 9 8 7 35 35 H 1.09000 * 117.50144 * 107.49460 * 9 8 7 36 36 H 1.09000 * 111.00397 * 35.21458 * 12 10 2 37 37 H 1.08996 * 111.00832 * 159.06475 * 12 10 2 38 38 H 1.09003 * 110.36549 * 204.14619 * 13 12 10 39 39 H 1.09002 * 110.45887 * 81.87421 * 13 12 10 40 40 H 0.97005 * 119.99354 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.88874 * 239.52447 * 23 14 13 42 42 H 1.09004 * 109.88598 * 118.35887 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3794 3.6353 -0.0002 7 6 1.6143 4.9602 -0.0002 8 6 1.7827 5.8733 -1.2163 9 6 2.4319 6.2481 0.1174 10 6 2.1976 -1.2686 0.0006 11 1 3.2727 -1.0916 -0.0295 12 6 1.7508 -2.1610 -1.1875 13 6 0.4720 -2.8226 -0.6159 14 7 0.7746 -3.0618 0.8070 15 6 0.1813 -4.0064 1.6013 16 1 0.4739 -4.1026 2.6364 17 6 -0.7961 -4.8405 1.0758 18 7 -1.1528 -4.7230 -0.1856 19 14 -1.6059 -6.1285 2.1596 20 1 -2.8060 -5.5442 2.8105 21 1 -2.0101 -7.2911 1.3288 22 1 -0.6455 -6.5742 3.2008 23 6 1.8183 -2.1177 1.2322 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 0.7583 2.5303 -0.8892 28 1 0.7588 2.5298 0.8907 29 1 3.0067 3.5776 0.8894 30 1 3.0054 3.5776 -0.8907 31 1 0.6370 4.9388 0.4819 32 1 2.4383 5.5297 -2.0166 33 1 0.9160 6.4525 -1.5346 34 1 1.9923 7.0741 0.6765 35 1 3.5149 6.1515 0.1947 36 1 1.5194 -1.5568 -2.0646 37 1 2.5078 -2.9101 -1.4198 38 1 0.2727 -3.7655 -1.1251 39 1 -0.3810 -2.1512 -0.7146 40 1 -1.8360 -5.3057 -0.5526 41 1 2.6910 -2.6652 1.5879 42 1 1.4350 -1.4728 2.0231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753432700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:26 Heat of formation + Delta-G solvation = -0.895660 kcal Electronic energy + Delta-G solvation = -20666.149937 eV Core-core repulsion = 17647.126081 eV Total energy + Delta-G solvation = -3019.023856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27811 -39.21070 -38.24368 -35.94966 -34.12835 -32.95801 -31.02985 -29.60698 -27.59954 -26.61423 -25.49742 -23.18225 -22.08995 -21.90512 -21.20348 -19.83292 -18.93882 -18.21644 -17.19019 -16.92929 -16.69805 -16.28293 -15.65787 -15.47205 -15.10228 -14.74363 -14.18480 -14.00795 -13.78706 -13.66289 -13.37361 -13.26881 -12.95087 -12.86069 -12.77589 -12.48526 -12.35326 -12.20161 -12.08424 -12.03176 -11.94615 -11.79469 -11.41522 -11.15195 -10.77587 -10.71570 -10.61212 -9.62281 -8.86922 -7.75746 -5.19786 1.48854 1.49702 1.58441 1.64391 2.03412 2.50653 2.95369 3.34491 3.51298 3.71549 3.82953 3.89780 4.00144 4.07427 4.10760 4.27324 4.29922 4.34791 4.44627 4.61688 4.65520 4.69567 4.70212 4.79123 4.83928 4.89491 4.94808 5.03350 5.08320 5.09726 5.14868 5.17933 5.31587 5.46518 5.47511 5.58356 5.68269 5.83832 6.32525 6.49577 7.12621 7.18970 7.78251 8.42295 9.25311 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040316 B = 0.003696 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.353762 B = 7574.908726 C = 7733.489513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.598 5.598 3 C 0.506 3.494 4 O -0.590 6.590 5 C -0.125 4.125 6 C -0.068 4.068 7 C -0.156 4.156 8 C -0.180 4.180 9 C -0.184 4.184 10 C 0.135 3.865 11 H 0.098 0.902 12 C -0.139 4.139 13 C 0.152 3.848 14 N -0.619 5.619 15 C -0.239 4.239 16 H 0.076 0.924 17 C -0.060 4.060 18 N -0.944 5.944 19 Si 0.977 3.023 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.274 1.274 23 C 0.129 3.871 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.018 0.982 40 H 0.247 0.753 41 H 0.028 0.972 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 18.412 -1.712 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.329 5.329 3 C 0.297 3.703 4 O -0.471 6.471 5 C -0.165 4.165 6 C -0.106 4.106 7 C -0.174 4.174 8 C -0.217 4.217 9 C -0.221 4.221 10 C 0.031 3.969 11 H 0.116 0.884 12 C -0.179 4.179 13 C 0.027 3.973 14 N -0.345 5.345 15 C -0.367 4.367 16 H 0.094 0.906 17 C -0.253 4.253 18 N -0.593 5.593 19 Si 0.806 3.194 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.200 1.200 23 C 0.002 3.998 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.648 18.246 -1.711 18.516 hybrid contribution -0.410 -1.141 0.510 1.315 sum 2.238 17.105 -1.201 17.293 Atomic orbital electron populations 1.22077 0.78087 1.04046 1.02625 1.47906 1.07907 1.05107 1.72020 1.21481 0.87802 0.86396 0.74599 1.90634 1.15902 1.88071 1.52470 1.21706 0.99266 0.89269 1.06224 1.20832 0.96445 0.91328 1.02025 1.22328 1.01145 0.90430 1.03517 1.23111 1.03547 1.03522 0.91553 1.23036 0.99473 0.98664 1.00959 1.21848 0.96665 0.83126 0.95291 0.88424 1.23184 0.99459 0.98283 0.96949 1.21906 0.92323 0.99122 0.83933 1.44739 1.43256 1.37944 1.08588 1.19373 1.15112 1.09038 0.93219 0.90621 1.25527 1.00178 1.01796 0.97781 1.70032 1.34242 1.41719 1.13319 0.85098 0.78332 0.78379 0.77598 1.21227 1.22050 1.19960 1.21686 0.91602 0.91129 0.95340 0.91673 0.91748 0.88526 0.86776 0.86825 0.92440 0.92591 0.86305 0.89226 0.87652 0.87667 0.89335 0.90166 0.91099 0.91277 0.96370 0.94280 0.95376 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.10 8.34 127.77 1.07 3.16 16 2 N -0.60 -18.98 2.82 -815.97 -2.30 -21.28 16 3 C 0.51 15.21 7.67 87.66 0.67 15.88 16 4 O -0.59 -21.98 15.35 -3.02 -0.05 -22.03 16 5 C -0.13 -2.51 4.21 29.85 0.13 -2.38 16 6 C -0.07 -1.39 4.79 30.59 0.15 -1.25 16 7 C -0.16 -2.41 5.74 -10.79 -0.06 -2.47 16 8 C -0.18 -2.56 10.18 30.59 0.31 -2.25 16 9 C -0.18 -2.68 10.25 30.59 0.31 -2.36 16 10 C 0.14 4.99 3.58 46.18 0.17 5.16 16 11 H 0.10 3.67 6.99 -2.39 -0.02 3.65 16 12 C -0.14 -5.28 6.53 31.99 0.21 -5.07 16 13 C 0.15 7.10 5.00 86.86 0.43 7.53 16 14 N -0.62 -30.99 2.97 -691.98 -2.05 -33.04 16 15 C -0.24 -13.10 10.27 84.03 0.86 -12.24 16 16 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 18 N -0.94 -54.13 10.09 21.65 0.22 -53.92 16 19 Si 0.98 44.74 29.55 68.60 2.03 46.77 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 C 0.13 5.47 6.24 86.73 0.54 6.02 16 24 H 0.06 1.70 7.99 -2.39 -0.02 1.68 16 25 H 0.06 2.38 5.19 -2.38 -0.01 2.37 16 26 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 27 H 0.11 1.85 8.11 -2.39 -0.02 1.84 16 28 H 0.11 1.84 7.40 -2.39 -0.02 1.83 16 29 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 30 H 0.06 1.29 7.83 -2.38 -0.02 1.27 16 31 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 32 H 0.09 1.35 8.03 -2.39 -0.02 1.33 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.07 3.77 5.87 -2.39 -0.01 3.76 16 39 H 0.02 0.87 5.54 -2.39 -0.01 0.85 16 40 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.02 1.04 8.04 -2.38 -0.02 1.02 16 Total: -1.00 -65.21 329.01 4.08 -61.13 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.99 Total: 15.47 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.25 Total: 6.90 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -4.14 Total: -108.24 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -65.21 4.08 -61.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753432700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.229 kcal (2) G-P(sol) polarization free energy of solvation -65.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds