Wall clock time and date at job start Mon Mar 30 2020 00:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34775 * 120.00554 * 2 1 4 4 O 1.21274 * 120.00590 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.99326 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.46842 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47344 * 179.97438 * 6 5 3 8 8 C 1.52998 * 117.50247 * 243.62695 * 7 6 5 9 9 C 1.52995 * 117.50216 * 175.00107 * 7 6 5 10 10 C 1.46500 * 119.99715 * 180.02562 * 2 1 3 11 11 H 1.09002 * 110.91617 * 176.09600 * 10 2 1 12 12 C 1.55160 * 111.00443 * 299.99695 * 10 2 1 13 13 C 1.54316 * 102.94268 * 82.57531 * 12 10 2 14 14 N 1.47026 * 107.27365 * 22.19228 * 13 12 10 15 15 C 1.36933 * 125.65326 * 180.79632 * 14 13 12 16 16 H 1.08001 * 120.00302 * 180.02562 * 15 14 13 17 17 C 1.38819 * 119.99866 * 0.02562 * 15 14 13 18 18 N 1.31626 * 119.99573 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00125 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47402 * 90.00064 * 19 17 15 21 21 H 1.48498 * 109.46929 * 209.99599 * 19 17 15 22 22 H 1.48496 * 109.47115 * 329.99904 * 19 17 15 23 23 C 1.47425 * 108.70074 * 1.05989 * 14 13 12 24 24 H 1.09001 * 109.47218 * 269.99414 * 1 2 3 25 25 H 1.09002 * 109.47333 * 29.99224 * 1 2 3 26 26 H 1.09002 * 109.47664 * 149.99481 * 1 2 3 27 27 H 1.08990 * 109.47370 * 299.99478 * 5 3 2 28 28 H 1.09001 * 109.47143 * 60.00175 * 5 3 2 29 29 H 1.09002 * 109.47416 * 300.00050 * 6 5 3 30 30 H 1.09006 * 109.47114 * 60.00234 * 6 5 3 31 31 H 1.09001 * 115.54695 * 29.32891 * 7 6 5 32 32 H 1.09001 * 117.49563 * 359.97438 * 8 7 6 33 33 H 1.08996 * 117.50401 * 145.01987 * 8 7 6 34 34 H 1.09000 * 117.50307 * 214.97737 * 9 7 6 35 35 H 1.09000 * 117.49886 * 359.97438 * 9 7 6 36 36 H 1.08997 * 110.71793 * 324.20861 * 12 10 2 37 37 H 1.09002 * 110.71871 * 200.94207 * 12 10 2 38 38 H 1.09004 * 109.88447 * 262.78098 * 13 12 10 39 39 H 1.09000 * 109.88516 * 141.60887 * 13 12 10 40 40 H 0.97000 * 119.99477 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.36478 * 94.71036 * 23 14 13 42 42 H 1.08998 * 110.36859 * 217.03414 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 6 2.3796 3.6351 0.0011 7 6 1.6147 4.9602 0.0011 8 6 1.7840 5.8736 -1.2146 9 6 2.4323 6.2479 0.1198 10 6 2.1974 -1.2688 -0.0006 11 1 3.2717 -1.0979 -0.0698 12 6 1.8482 -2.1130 1.2535 13 6 0.5310 -2.8068 0.8474 14 7 0.4791 -2.8192 -0.6219 15 6 -0.5386 -3.3332 -1.3803 16 1 -0.4818 -3.2942 -2.4581 17 6 -1.6434 -3.9044 -0.7637 18 7 -1.7128 -3.9515 0.5498 19 14 -3.0314 -4.6062 -1.7982 20 1 -2.7611 -6.0383 -2.0833 21 1 -4.3123 -4.4823 -1.0573 22 1 -3.1242 -3.8560 -3.0764 23 6 1.7073 -2.1924 -1.1436 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8901 -0.5137 26 1 -0.3634 -0.8899 -0.5139 27 1 0.7585 2.5302 -0.8891 28 1 0.7591 2.5298 0.8908 29 1 3.0063 3.5770 0.8911 30 1 3.0063 3.5778 -0.8890 31 1 0.6370 4.9386 0.4824 32 1 2.4407 5.5308 -2.0142 33 1 0.9176 6.4532 -1.5333 34 1 1.9924 7.0737 0.6789 35 1 3.5152 6.1511 0.1984 36 1 1.6944 -1.4704 2.1204 37 1 2.6270 -2.8496 1.4516 38 1 -0.3185 -2.2504 1.2435 39 1 0.5175 -3.8283 1.2274 40 1 -2.4847 -4.3510 0.9806 41 1 2.4566 -2.9525 -1.3648 42 1 1.4849 -1.6067 -2.0355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753432701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:29 Heat of formation + Delta-G solvation = 13.459408 kcal Electronic energy + Delta-G solvation = -20836.920527 eV Core-core repulsion = 17818.519153 eV Total energy + Delta-G solvation = -3018.401374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.84378 -37.91757 -37.18587 -34.19670 -32.55510 -31.68388 -29.32198 -27.83894 -26.03220 -25.13137 -24.00699 -22.52660 -20.78205 -20.23771 -20.08179 -18.39985 -17.00965 -16.79831 -15.89561 -15.59821 -15.39974 -14.68024 -14.28694 -13.90374 -13.79998 -13.63232 -12.74975 -12.60385 -12.28642 -11.95965 -11.90633 -11.72597 -11.66178 -11.47672 -11.38073 -11.23531 -10.96168 -10.92046 -10.71980 -10.43362 -10.24635 -10.16274 -9.98388 -9.92320 -9.68003 -9.29411 -8.71703 -8.13953 -6.84771 -5.77826 -3.12253 2.96458 3.35830 3.41188 3.41924 3.43087 3.66522 4.44462 4.51098 4.75009 4.80049 4.88244 5.17305 5.27450 5.38449 5.42778 5.45882 5.47497 5.51997 5.60318 5.73230 5.75130 5.82914 5.88557 5.93167 5.95281 6.08342 6.16408 6.23679 6.30559 6.36657 6.52967 6.54960 6.64069 6.81578 7.12876 7.51387 7.57711 7.77275 7.90254 8.18233 8.54848 9.15373 9.74877 10.40632 11.32992 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.004259 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.060017 B = 6572.861383 C = 7126.367792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.589 5.589 3 C 0.508 3.492 4 O -0.560 6.560 5 C -0.134 4.134 6 C -0.072 4.072 7 C -0.152 4.152 8 C -0.182 4.182 9 C -0.183 4.183 10 C 0.122 3.878 11 H 0.098 0.902 12 C -0.156 4.156 13 C 0.175 3.825 14 N -0.603 5.603 15 C -0.232 4.232 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.125 3.875 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.253 0.747 41 H 0.030 0.970 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 14.729 0.188 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.320 5.320 3 C 0.297 3.703 4 O -0.439 6.439 5 C -0.174 4.174 6 C -0.110 4.110 7 C -0.170 4.170 8 C -0.219 4.219 9 C -0.220 4.220 10 C 0.018 3.982 11 H 0.116 0.884 12 C -0.195 4.195 13 C 0.050 3.950 14 N -0.330 5.330 15 C -0.360 4.360 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.002 4.002 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.141 0.859 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.029 14.602 0.225 15.445 hybrid contribution -0.969 -0.505 -0.418 1.170 sum 4.060 14.097 -0.193 14.671 Atomic orbital electron populations 1.22262 0.78492 1.05344 1.02145 1.47741 1.07683 1.05209 1.71361 1.20688 0.87955 0.85601 0.76103 1.90632 1.14143 1.87666 1.51474 1.21645 0.99342 0.92194 1.04249 1.20914 0.96574 0.90154 1.03354 1.22377 1.00707 0.91430 1.02535 1.23043 1.03169 1.03882 0.91814 1.22951 0.99633 0.98669 1.00707 1.22225 0.96216 0.82746 0.97032 0.88388 1.23243 1.00843 0.98660 0.96731 1.21225 0.91590 0.98436 0.83717 1.44614 1.17400 1.69076 1.01879 1.19041 0.95347 1.31876 0.89781 0.90436 1.24794 0.98537 1.01009 0.95821 1.69975 1.30207 1.49572 1.06863 0.86139 0.81643 0.79049 0.79037 1.21645 1.21682 1.20687 1.21896 0.90086 0.93497 0.94722 0.93255 0.92717 0.85897 0.88963 0.89107 0.90956 0.91186 0.87746 0.88772 0.89019 0.89009 0.88804 0.92003 0.91502 0.93142 0.93988 0.93703 0.95211 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 8.50 59.84 0.51 1.53 16 2 N -0.59 -10.26 2.91 -171.48 -0.50 -10.76 16 3 C 0.51 8.42 7.67 -10.98 -0.08 8.33 16 4 O -0.56 -10.85 15.36 5.56 0.09 -10.76 16 5 C -0.13 -1.66 4.21 -27.88 -0.12 -1.78 16 6 C -0.07 -0.84 4.79 -26.73 -0.13 -0.97 16 7 C -0.15 -1.46 5.74 -90.63 -0.52 -1.98 16 8 C -0.18 -1.61 10.18 -26.73 -0.27 -1.88 16 9 C -0.18 -1.59 10.25 -26.73 -0.27 -1.86 16 10 C 0.12 2.28 3.66 -65.78 -0.24 2.04 16 11 H 0.10 1.83 7.02 -51.93 -0.36 1.47 16 12 C -0.16 -2.95 6.48 -24.90 -0.16 -3.11 16 13 C 0.17 4.04 4.33 -3.07 -0.01 4.03 16 14 N -0.60 -14.45 1.87 -170.07 -0.32 -14.77 16 15 C -0.23 -6.11 9.80 -15.06 -0.15 -6.26 16 16 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 17 C 0.00 -0.13 5.49 -17.42 -0.10 -0.23 16 18 N -0.92 -25.63 10.31 55.49 0.57 -25.06 16 19 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.12 2.56 6.40 -2.53 -0.02 2.55 16 24 H 0.05 0.82 7.90 -51.93 -0.41 0.41 16 25 H 0.05 0.77 6.44 -51.93 -0.33 0.43 16 26 H 0.12 2.57 4.74 -51.93 -0.25 2.33 16 27 H 0.09 1.05 7.40 -51.93 -0.38 0.66 16 28 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 29 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 31 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.09 0.84 8.03 -51.93 -0.42 0.42 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.25 6.36 -51.93 -0.33 0.92 16 39 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -29.16 329.45 -8.83 -37.98 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.05 Total: 1.76 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.56 Total: 0.41 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.24 Total: -50.59 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.16 -8.83 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753432701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.444 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds