Wall clock time and date at job start Mon Mar 30 2020 00:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34775 * 120.00554 * 2 1 4 4 O 1.21274 * 120.00590 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.99326 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.46842 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47344 * 179.97438 * 6 5 3 8 8 C 1.52998 * 117.50247 * 243.62695 * 7 6 5 9 9 C 1.52995 * 117.50216 * 175.00107 * 7 6 5 10 10 C 1.46500 * 119.99715 * 180.02562 * 2 1 3 11 11 H 1.09002 * 110.91617 * 176.09600 * 10 2 1 12 12 C 1.55160 * 111.00443 * 299.99695 * 10 2 1 13 13 C 1.54316 * 102.94268 * 82.57531 * 12 10 2 14 14 N 1.47026 * 107.27365 * 22.19228 * 13 12 10 15 15 C 1.36933 * 125.65326 * 180.79632 * 14 13 12 16 16 H 1.08001 * 120.00302 * 180.02562 * 15 14 13 17 17 C 1.38819 * 119.99866 * 0.02562 * 15 14 13 18 18 N 1.31626 * 119.99573 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00125 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47402 * 90.00064 * 19 17 15 21 21 H 1.48498 * 109.46929 * 209.99599 * 19 17 15 22 22 H 1.48496 * 109.47115 * 329.99904 * 19 17 15 23 23 C 1.47425 * 108.70074 * 1.05989 * 14 13 12 24 24 H 1.09001 * 109.47218 * 269.99414 * 1 2 3 25 25 H 1.09002 * 109.47333 * 29.99224 * 1 2 3 26 26 H 1.09002 * 109.47664 * 149.99481 * 1 2 3 27 27 H 1.08990 * 109.47370 * 299.99478 * 5 3 2 28 28 H 1.09001 * 109.47143 * 60.00175 * 5 3 2 29 29 H 1.09002 * 109.47416 * 300.00050 * 6 5 3 30 30 H 1.09006 * 109.47114 * 60.00234 * 6 5 3 31 31 H 1.09001 * 115.54695 * 29.32891 * 7 6 5 32 32 H 1.09001 * 117.49563 * 359.97438 * 8 7 6 33 33 H 1.08996 * 117.50401 * 145.01987 * 8 7 6 34 34 H 1.09000 * 117.50307 * 214.97737 * 9 7 6 35 35 H 1.09000 * 117.49886 * 359.97438 * 9 7 6 36 36 H 1.08997 * 110.71793 * 324.20861 * 12 10 2 37 37 H 1.09002 * 110.71871 * 200.94207 * 12 10 2 38 38 H 1.09004 * 109.88447 * 262.78098 * 13 12 10 39 39 H 1.09000 * 109.88516 * 141.60887 * 13 12 10 40 40 H 0.97000 * 119.99477 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.36478 * 94.71036 * 23 14 13 42 42 H 1.08998 * 110.36859 * 217.03414 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 0.0006 6 6 2.3796 3.6351 0.0011 7 6 1.6147 4.9602 0.0011 8 6 1.7840 5.8736 -1.2146 9 6 2.4323 6.2479 0.1198 10 6 2.1974 -1.2688 -0.0006 11 1 3.2717 -1.0979 -0.0698 12 6 1.8482 -2.1130 1.2535 13 6 0.5310 -2.8068 0.8474 14 7 0.4791 -2.8192 -0.6219 15 6 -0.5386 -3.3332 -1.3803 16 1 -0.4818 -3.2942 -2.4581 17 6 -1.6434 -3.9044 -0.7637 18 7 -1.7128 -3.9515 0.5498 19 14 -3.0314 -4.6062 -1.7982 20 1 -2.7611 -6.0383 -2.0833 21 1 -4.3123 -4.4823 -1.0573 22 1 -3.1242 -3.8560 -3.0764 23 6 1.7073 -2.1924 -1.1436 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8901 -0.5137 26 1 -0.3634 -0.8899 -0.5139 27 1 0.7585 2.5302 -0.8891 28 1 0.7591 2.5298 0.8908 29 1 3.0063 3.5770 0.8911 30 1 3.0063 3.5778 -0.8890 31 1 0.6370 4.9386 0.4824 32 1 2.4407 5.5308 -2.0142 33 1 0.9176 6.4532 -1.5333 34 1 1.9924 7.0737 0.6789 35 1 3.5152 6.1511 0.1984 36 1 1.6944 -1.4704 2.1204 37 1 2.6270 -2.8496 1.4516 38 1 -0.3185 -2.2504 1.2435 39 1 0.5175 -3.8283 1.2274 40 1 -2.4847 -4.3510 0.9806 41 1 2.4566 -2.9525 -1.3648 42 1 1.4849 -1.6067 -2.0355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753432701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:29 Heat of formation + Delta-G solvation = -1.273493 kcal Electronic energy + Delta-G solvation = -20837.559394 eV Core-core repulsion = 17818.519153 eV Total energy + Delta-G solvation = -3019.040240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24234 -39.22683 -38.24420 -35.79727 -34.15652 -32.95038 -31.11217 -29.48677 -27.47892 -26.59833 -25.52481 -23.18441 -22.03391 -21.92586 -21.20813 -19.79705 -18.89398 -18.17931 -17.08646 -16.90171 -16.65594 -16.28829 -15.66279 -15.43294 -15.13726 -14.83875 -14.20914 -13.97293 -13.80481 -13.51081 -13.40042 -13.20420 -12.82584 -12.80719 -12.72478 -12.45194 -12.31687 -12.20157 -12.09205 -12.00587 -11.94578 -11.79853 -11.52549 -11.15442 -10.75513 -10.70240 -10.64173 -9.64264 -8.78229 -7.81546 -5.16987 1.50085 1.51139 1.59405 1.66078 2.08953 2.51924 2.95347 3.37979 3.53933 3.67231 3.84215 3.91372 4.00243 4.08136 4.10812 4.27983 4.31479 4.42422 4.44470 4.63008 4.64263 4.70566 4.77251 4.81675 4.83634 4.89739 4.98317 5.04539 5.08603 5.09517 5.17404 5.31238 5.31582 5.46878 5.49693 5.63815 5.69430 5.81232 6.20695 6.55127 7.13046 7.21414 7.78146 8.43072 9.27969 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027524 B = 0.004259 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.060017 B = 6572.861383 C = 7126.367792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.593 5.593 3 C 0.506 3.494 4 O -0.589 6.589 5 C -0.126 4.126 6 C -0.066 4.066 7 C -0.158 4.158 8 C -0.181 4.181 9 C -0.182 4.182 10 C 0.131 3.869 11 H 0.103 0.897 12 C -0.141 4.141 13 C 0.189 3.811 14 N -0.614 5.614 15 C -0.239 4.239 16 H 0.080 0.920 17 C -0.055 4.055 18 N -0.945 5.945 19 Si 0.973 3.027 20 H -0.293 1.293 21 H -0.295 1.295 22 H -0.269 1.269 23 C 0.126 3.874 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.004 0.996 40 H 0.246 0.754 41 H 0.035 0.965 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 16.460 -0.322 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.324 5.324 3 C 0.297 3.703 4 O -0.471 6.471 5 C -0.166 4.166 6 C -0.104 4.104 7 C -0.176 4.176 8 C -0.218 4.218 9 C -0.219 4.219 10 C 0.026 3.974 11 H 0.121 0.879 12 C -0.181 4.181 13 C 0.064 3.936 14 N -0.341 5.341 15 C -0.368 4.368 16 H 0.098 0.902 17 C -0.249 4.249 18 N -0.594 5.594 19 Si 0.802 3.198 20 H -0.220 1.220 21 H -0.221 1.221 22 H -0.194 1.194 23 C 0.000 4.000 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.023 0.977 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.781 16.355 -0.305 17.043 hybrid contribution -0.824 -1.029 -0.285 1.349 sum 3.957 15.327 -0.590 15.840 Atomic orbital electron populations 1.22114 0.78106 1.05053 1.02071 1.47815 1.07836 1.05117 1.71609 1.21412 0.87778 0.86393 0.74766 1.90620 1.15673 1.88097 1.52696 1.21688 0.99306 0.89673 1.05907 1.20820 0.96356 0.91184 1.02075 1.22328 1.01140 0.90539 1.03571 1.23110 1.03556 1.03556 0.91606 1.23033 0.99506 0.98535 1.00791 1.22049 0.96518 0.83166 0.95664 0.87899 1.23109 0.98842 0.98829 0.97282 1.20932 0.93035 0.96304 0.83351 1.44755 1.18027 1.69071 1.02236 1.19336 0.95982 1.31232 0.90210 0.90227 1.25504 1.00733 1.01876 0.96808 1.70166 1.30463 1.50549 1.08194 0.85165 0.78665 0.77983 0.77998 1.22011 1.22106 1.19406 1.21971 0.88884 0.93778 0.95401 0.93232 0.89414 0.89641 0.87267 0.87132 0.92228 0.92594 0.86500 0.89225 0.87734 0.87637 0.89191 0.90853 0.90179 0.95310 0.97749 0.94413 0.94748 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.25 8.50 127.77 1.09 3.34 16 2 N -0.59 -19.75 2.91 -814.84 -2.37 -22.12 16 3 C 0.51 15.84 7.67 87.66 0.67 16.51 16 4 O -0.59 -22.16 15.36 -3.01 -0.05 -22.20 16 5 C -0.13 -2.79 4.21 29.85 0.13 -2.66 16 6 C -0.07 -1.43 4.79 30.59 0.15 -1.28 16 7 C -0.16 -2.63 5.74 -10.80 -0.06 -2.69 16 8 C -0.18 -2.78 10.18 30.59 0.31 -2.46 16 9 C -0.18 -2.76 10.25 30.59 0.31 -2.45 16 10 C 0.13 4.75 3.66 46.38 0.17 4.92 16 11 H 0.10 3.70 7.02 -2.39 -0.02 3.68 16 12 C -0.14 -5.27 6.48 31.78 0.21 -5.06 16 13 C 0.19 8.86 4.33 86.73 0.38 9.24 16 14 N -0.61 -29.65 1.87 -691.98 -1.29 -30.94 16 15 C -0.24 -12.62 9.80 84.04 0.82 -11.80 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.06 -2.99 5.49 84.86 0.47 -2.53 16 18 N -0.95 -53.85 10.31 21.65 0.22 -53.63 16 19 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.13 5.10 6.40 86.86 0.56 5.65 16 24 H 0.05 1.59 7.90 -2.39 -0.02 1.58 16 25 H 0.09 2.22 6.44 -2.39 -0.02 2.21 16 26 H 0.09 3.54 4.74 -2.39 -0.01 3.53 16 27 H 0.11 2.09 7.40 -2.39 -0.02 2.07 16 28 H 0.11 2.06 8.11 -2.39 -0.02 2.04 16 29 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 30 H 0.06 1.35 7.83 -2.38 -0.02 1.33 16 31 H 0.12 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.09 1.45 8.03 -2.39 -0.02 1.43 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.03 1.47 6.36 -2.38 -0.02 1.45 16 39 H 0.00 0.23 7.49 -2.39 -0.02 0.21 16 40 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -62.91 329.45 4.71 -58.20 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.98 Total: 16.06 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.19 Total: 8.73 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.44 Total: -106.69 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -62.91 4.71 -58.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753432701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.923 kcal (2) G-P(sol) polarization free energy of solvation -62.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds