Wall clock time and date at job start Mon Mar 30 2020 02:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39590 * 120.09909 * 275.96205 * 3 2 1 5 5 C 1.38474 * 119.90048 * 180.02562 * 4 3 2 6 6 O 1.35911 * 119.94810 * 180.02562 * 5 4 3 7 7 C 1.38765 * 120.09987 * 359.73772 * 5 4 3 8 8 C 1.38716 * 120.19458 * 0.52061 * 7 5 4 9 9 O 1.35909 * 119.94569 * 179.76085 * 8 7 5 10 10 C 1.42895 * 117.00295 * 5.30999 * 9 8 7 11 11 H 1.09002 * 109.47011 * 21.89389 * 10 9 8 12 12 C 1.50700 * 109.47163 * 141.89726 * 10 9 8 13 13 H 1.07996 * 120.00149 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99686 * 180.02562 * 12 10 9 15 15 N 1.31513 * 120.00486 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 119.99670 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47440 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47347 * 119.99782 * 16 14 12 19 19 H 1.48500 * 109.47252 * 239.99799 * 16 14 12 20 20 C 1.53006 * 109.46977 * 261.89577 * 10 9 8 21 21 Cl 1.80302 * 109.47145 * 65.00039 * 20 10 9 22 22 C 1.38515 * 120.10057 * 359.48438 * 8 7 5 23 23 H 1.07996 * 120.04836 * 0.02562 * 4 3 2 24 24 H 0.96694 * 114.00113 * 89.99867 * 6 5 4 25 25 H 1.07993 * 119.89736 * 180.25588 * 7 5 4 26 26 H 0.96996 * 120.00279 * 179.97438 * 15 14 12 27 27 H 1.09004 * 109.46871 * 184.99971 * 20 10 9 28 28 H 1.08999 * 109.47044 * 304.99939 * 20 10 9 29 29 H 1.08001 * 120.05498 * 180.27881 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2681 -0.1245 1.2011 5 6 4.6528 -0.1228 1.1964 6 8 5.3355 -0.2451 2.3653 7 6 5.3445 -0.0025 -0.0005 8 6 4.6530 0.1274 -1.1959 9 8 5.3356 0.2498 -2.3648 10 6 6.7572 0.1198 -2.3025 11 1 7.0326 -0.4313 -1.4033 12 6 7.2473 -0.6245 -3.5178 13 1 6.5434 -0.9647 -4.2629 14 6 8.5942 -0.8722 -3.6778 15 7 9.4513 -0.4584 -2.7702 16 14 9.2015 -1.7954 -5.1838 17 1 8.0460 -2.1498 -6.0466 18 1 10.1431 -0.9358 -5.9451 19 1 9.8983 -3.0353 -4.7566 20 6 7.3953 1.5100 -2.2643 21 17 6.9253 2.3451 -0.7370 22 6 3.2678 0.1269 -1.2007 23 1 2.7306 -0.2224 2.1327 24 1 5.5337 -1.1590 2.6112 25 1 6.4245 -0.0058 -0.0008 26 1 10.3988 -0.6330 -2.8826 27 1 8.4802 1.4130 -2.3064 28 1 7.0490 2.0923 -3.1182 29 1 2.7301 0.2236 -2.1324 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234144432.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:03 Heat of formation + Delta-G solvation = -39.223238 kcal Electronic energy + Delta-G solvation = -17449.015304 eV Core-core repulsion = 14363.820659 eV Total energy + Delta-G solvation = -3085.194646 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03646 -38.05679 -37.03529 -35.53639 -34.87652 -33.52954 -30.46154 -30.14730 -28.70331 -25.44256 -24.13795 -22.33308 -21.34823 -19.19836 -17.29318 -16.88761 -16.55834 -15.80484 -15.66196 -14.90670 -14.68548 -14.29360 -13.69276 -13.56745 -13.34279 -12.92692 -12.88891 -12.40714 -12.17199 -11.81399 -11.71561 -11.26740 -11.18684 -10.97183 -10.77951 -10.60816 -10.39241 -9.78050 -9.51280 -9.29856 -8.79591 -8.54082 -7.73948 -6.53697 -4.62106 0.91336 1.52424 2.67666 3.05037 3.06112 3.15607 3.20220 3.30211 3.65717 3.96685 4.02736 4.33509 4.44277 4.83096 5.19518 5.31307 5.37962 5.61018 5.91804 6.06627 6.14157 6.31528 6.36145 6.51837 6.71855 6.74761 7.01691 7.43591 7.50575 7.63041 7.75220 8.10876 8.53973 9.06479 10.53180 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.021730 B = 0.005920 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.220062 B = 4728.711752 C = 5245.650047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.269 3.731 3 C 0.011 3.989 4 C -0.151 4.151 5 C 0.139 3.861 6 O -0.495 6.495 7 C -0.191 4.191 8 C 0.172 3.828 9 O -0.303 6.303 10 C 0.204 3.796 11 H 0.054 0.946 12 C -0.525 4.525 13 H 0.079 0.921 14 C 0.065 3.935 15 N -0.887 5.887 16 Si 0.916 3.084 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.038 4.038 21 Cl -0.238 7.238 22 C -0.127 4.127 23 H 0.131 0.869 24 H 0.391 0.609 25 H 0.154 0.846 26 H 0.273 0.727 27 H 0.135 0.865 28 H 0.077 0.923 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 -0.535 4.961 6.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.046 4.046 3 C 0.008 3.992 4 C -0.172 4.172 5 C 0.095 3.905 6 O -0.305 6.305 7 C -0.211 4.211 8 C 0.124 3.876 9 O -0.216 6.216 10 C 0.149 3.851 11 H 0.071 0.929 12 C -0.563 4.563 13 H 0.097 0.903 14 C -0.139 4.139 15 N -0.524 5.524 16 Si 0.743 3.257 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.100 4.100 21 Cl -0.212 7.212 22 C -0.148 4.148 23 H 0.149 0.851 24 H 0.247 0.753 25 H 0.172 0.828 26 H 0.083 0.917 27 H 0.153 0.847 28 H 0.095 0.905 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.510 0.179 4.905 7.379 hybrid contribution 1.181 -0.805 -0.487 1.510 sum -4.329 -0.626 4.419 6.217 Atomic orbital electron populations 1.81210 1.12024 1.09366 1.07842 1.25605 0.92498 0.93258 0.93218 1.15300 0.83868 1.06165 0.93890 1.21070 0.93447 1.05758 0.96929 1.17862 0.88839 0.98877 0.84962 1.84828 1.76143 1.32289 1.37194 1.22128 1.02919 1.04705 0.91338 1.18647 0.90964 0.91760 0.86208 1.86177 1.24097 1.84346 1.26964 1.20647 0.72279 0.91780 1.00353 0.92899 1.21085 0.92833 1.35912 1.06431 0.90335 1.24984 0.96125 0.95358 0.97424 1.69790 1.03440 1.45158 1.34039 0.86120 0.78936 0.79266 0.81410 1.19226 1.20477 1.20470 1.25764 1.06388 0.94462 0.83395 1.98655 1.94278 1.83056 1.45193 1.20309 0.91601 1.05470 0.97417 0.85065 0.75334 0.82822 0.91720 0.84694 0.90479 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.73 18.54 41.84 0.78 -5.95 15 2 C 0.27 3.83 15.33 -22.47 -0.34 3.49 15 3 C 0.01 0.16 5.73 -106.98 -0.61 -0.45 15 4 C -0.15 -1.99 9.69 -38.99 -0.38 -2.37 15 5 C 0.14 2.03 6.69 -39.30 -0.26 1.76 15 6 O -0.49 -6.40 13.50 -19.46 -0.26 -6.66 15 7 C -0.19 -3.25 7.12 -39.21 -0.28 -3.53 15 8 C 0.17 3.07 6.20 -39.30 -0.24 2.82 15 9 O -0.30 -6.27 9.69 -19.45 -0.19 -6.45 15 10 C 0.20 4.52 2.15 -27.88 -0.06 4.46 15 11 H 0.05 1.22 5.47 -51.93 -0.28 0.94 15 12 C -0.52 -12.71 8.89 -34.44 -0.31 -13.01 15 13 H 0.08 1.92 7.81 -52.49 -0.41 1.51 15 14 C 0.06 1.55 5.29 -17.82 -0.09 1.45 15 15 N -0.89 -21.72 11.29 55.43 0.63 -21.09 15 16 Si 0.92 18.85 29.54 -169.99 -5.02 13.83 15 17 H -0.27 -5.51 7.11 56.52 0.40 -5.10 15 18 H -0.28 -5.72 7.11 56.52 0.40 -5.31 15 19 H -0.28 -5.74 7.11 56.52 0.40 -5.33 15 20 C -0.04 -0.79 6.17 37.16 0.23 -0.56 15 21 Cl -0.24 -4.61 25.66 -51.86 -1.33 -5.94 15 22 C -0.13 -1.94 9.69 -38.99 -0.38 -2.32 15 23 H 0.13 1.46 8.06 -52.49 -0.42 1.03 15 24 H 0.39 3.07 9.06 45.56 0.41 3.49 15 25 H 0.15 2.87 4.81 -52.49 -0.25 2.62 15 26 H 0.27 6.34 8.31 -40.82 -0.34 6.00 15 27 H 0.14 3.08 5.95 -51.93 -0.31 2.77 15 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 29 H 0.14 1.94 8.06 -52.49 -0.42 1.51 15 LS Contribution 278.14 15.07 4.19 4.19 Total: -1.00 -25.86 278.14 -5.18 -31.05 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -1.25 Total: 5.29 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.73 Total: -8.26 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 1.40 Total: -27.04 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.45 Total: -13.12 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 17 Polarization: -4.61 SS G_CDS: -1.33 Total: -5.94 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.86 -5.18 -31.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234144432.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.176 kcal (2) G-P(sol) polarization free energy of solvation -25.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds