Wall clock time and date at job start Mon Mar 30 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34705 * 117.00300 * 2 1 4 4 O 1.21471 * 119.99838 * 359.97438 * 3 2 1 5 5 C 1.47744 * 120.00283 * 180.02562 * 3 2 1 6 6 C 1.39690 * 120.11208 * 359.72164 * 5 3 2 7 7 C 1.37997 * 119.99007 * 179.76678 * 6 5 3 8 8 C 1.38236 * 120.23144 * 0.49451 * 7 6 5 9 9 C 1.38993 * 120.22977 * 359.78208 * 8 7 6 10 10 O 1.35731 * 120.00032 * 179.97438 * 9 8 7 11 11 C 1.22313 * 116.99679 * 354.25233 * 10 9 8 12 12 H 1.07997 * 120.00303 * 5.10387 * 11 10 9 13 13 C 1.46635 * 120.00052 * 185.10265 * 11 10 9 14 14 N 1.29372 * 120.00000 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00209 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47649 * 89.99558 * 15 13 11 17 17 H 1.48505 * 109.47013 * 209.99851 * 15 13 11 18 18 H 1.48497 * 109.46940 * 329.99661 * 15 13 11 19 19 C 1.38665 * 120.00334 * 359.95520 * 9 8 7 20 20 N 1.48021 * 120.11033 * 179.97438 * 19 9 8 21 21 O 1.31704 * 119.99736 * 270.02460 * 20 19 9 22 22 O 1.31699 * 120.00096 * 90.02850 * 20 19 9 23 23 H 1.09002 * 109.47173 * 300.00301 * 1 2 3 24 24 H 1.09011 * 109.47031 * 59.99876 * 1 2 3 25 25 H 1.08995 * 109.47821 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00468 * 0.02562 * 6 5 3 27 27 H 1.08002 * 119.88472 * 180.25034 * 7 6 5 28 28 H 1.08002 * 119.88896 * 179.76635 * 8 7 6 29 29 H 0.97003 * 119.99933 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3021 0.1075 0.0048 7 6 5.6800 0.1826 -0.0007 8 6 6.3100 1.4131 -0.0010 9 6 5.5599 2.5833 -0.0005 10 8 6.1833 3.7889 -0.0004 11 6 7.4016 3.7841 0.1084 12 1 7.9394 2.8476 0.1158 13 6 8.1319 5.0499 0.2289 14 7 7.4877 6.1718 0.2205 15 14 9.9926 5.0426 0.3943 16 1 10.6099 5.1014 -0.9550 17 1 10.4236 6.2216 1.1878 18 1 10.4234 3.7989 1.0819 19 6 4.1747 2.5190 -0.0006 20 7 3.3736 3.7637 0.0005 21 8 3.0177 4.3166 1.1416 22 8 3.0168 4.3181 -1.1396 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.8137 -0.8558 0.0089 27 1 6.2683 -0.7231 -0.0006 28 1 7.3887 1.4654 -0.0015 29 1 7.9709 7.0091 0.2998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307358982.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:03 Heat of formation + Delta-G solvation = -22.430098 kcal Electronic energy + Delta-G solvation = -20165.259735 eV Core-core repulsion = 16640.084130 eV Total energy + Delta-G solvation = -3525.175605 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.067 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99842 -40.24885 -38.13059 -36.95003 -36.25814 -33.36880 -33.26015 -31.25648 -30.29493 -27.65913 -26.11570 -25.65537 -23.36405 -21.76591 -20.94215 -19.13410 -18.51430 -17.34442 -17.17884 -16.56153 -16.34961 -16.23897 -15.50207 -15.03751 -14.95749 -14.31036 -14.23495 -13.68847 -13.31713 -13.13198 -12.55889 -12.25043 -11.89201 -11.86460 -11.46472 -11.40243 -10.88298 -10.75456 -10.43309 -10.39305 -10.23866 -9.80519 -9.60856 -9.58177 -8.89188 -8.11348 -7.36623 -4.24599 0.87290 0.89866 1.62950 2.19134 2.66248 2.68504 2.75143 2.80620 2.85304 3.40654 3.87120 4.32353 4.48277 4.80786 5.11094 5.19439 5.28436 5.45533 5.53529 5.62350 5.82568 6.00932 6.30032 6.34258 6.40813 6.52616 6.79315 6.84824 7.13519 7.22930 7.72662 7.80958 7.94418 9.21473 9.76528 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.005971 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.771018 B = 4687.893601 C = 5450.174558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.349 6.349 3 C 0.503 3.497 4 O -0.493 6.493 5 C -0.024 4.024 6 C -0.186 4.186 7 C -0.048 4.048 8 C -0.197 4.197 9 C 0.091 3.909 10 O -0.071 6.071 11 C -0.394 4.394 12 H 0.105 0.895 13 C 0.048 3.952 14 N -0.772 5.772 15 Si 0.958 3.042 16 H -0.261 1.261 17 H -0.267 1.267 18 H -0.254 1.254 19 C -0.050 4.050 20 N 0.011 4.989 21 O -0.159 6.159 22 O -0.163 6.163 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.136 0.864 27 H 0.128 0.872 28 H 0.144 0.856 29 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -10.992 0.069 11.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.265 6.265 3 C 0.347 3.653 4 O -0.381 6.381 5 C -0.027 4.027 6 C -0.207 4.207 7 C -0.066 4.066 8 C -0.217 4.217 9 C 0.029 3.971 10 O 0.039 5.961 11 C -0.470 4.470 12 H 0.122 0.878 13 C -0.173 4.173 14 N -0.394 5.394 15 Si 0.779 3.221 16 H -0.186 1.186 17 H -0.192 1.192 18 H -0.178 1.178 19 C -0.135 4.135 20 N 0.507 4.493 21 O -0.365 6.365 22 O -0.368 6.368 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.162 0.838 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.715 -10.704 0.063 10.728 hybrid contribution 0.364 0.457 0.023 0.585 sum -0.351 -10.247 0.086 10.253 Atomic orbital electron populations 1.23288 0.76078 1.03559 1.02830 1.86524 1.23417 1.32106 1.84487 1.21258 0.89106 0.81727 0.73204 1.90949 1.66726 1.35724 1.44679 1.18087 0.88401 0.91584 1.04595 1.20576 0.93551 0.95625 1.10934 1.20800 0.93846 0.96878 0.95110 1.20870 1.00518 0.90552 1.09799 1.18123 0.87676 0.86216 1.05048 1.80318 1.23297 1.26467 1.66056 1.21307 0.81242 0.95302 1.49179 0.87768 1.27304 1.02352 0.92711 0.94971 1.68936 1.40318 0.99501 1.30669 0.85424 0.77002 0.79852 0.79812 1.18613 1.19156 1.17786 1.18548 0.87304 0.80686 1.26934 1.49826 0.96546 1.01248 1.01678 1.96175 1.58720 1.65961 1.15614 1.96172 1.58835 1.65989 1.15763 0.91760 0.91775 0.87938 0.84631 0.85384 0.83844 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 15 2 O -0.35 -5.52 9.81 -40.51 -0.40 -5.91 15 3 C 0.50 10.11 7.90 34.62 0.27 10.38 15 4 O -0.49 -11.44 14.34 -24.25 -0.35 -11.78 15 5 C -0.02 -0.50 5.87 -105.01 -0.62 -1.12 15 6 C -0.19 -3.14 9.62 -39.13 -0.38 -3.52 15 7 C -0.05 -0.76 10.02 -39.67 -0.40 -1.16 15 8 C -0.20 -3.81 9.12 -39.30 -0.36 -4.17 15 9 C 0.09 2.19 6.58 -39.14 -0.26 1.93 15 10 O -0.07 -1.91 9.04 20.96 0.19 -1.72 15 11 C -0.39 -9.70 9.48 34.12 0.32 -9.38 15 12 H 0.11 2.25 5.01 -52.49 -0.26 1.99 15 13 C 0.05 1.12 5.69 -15.20 -0.09 1.03 15 14 N -0.77 -19.73 13.66 55.99 0.76 -18.97 15 15 Si 0.96 16.86 29.64 -169.99 -5.04 11.82 15 16 H -0.26 -4.47 7.11 56.52 0.40 -4.07 15 17 H -0.27 -4.58 7.11 56.52 0.40 -4.17 15 18 H -0.25 -4.26 7.11 56.52 0.40 -3.86 15 19 C -0.05 -1.23 6.30 -79.33 -0.50 -1.73 15 20 N 0.01 0.31 2.70 34.26 0.09 0.40 15 21 O -0.16 -4.43 19.73 -34.54 -0.68 -5.11 15 22 O -0.16 -4.53 19.72 -34.56 -0.68 -5.21 15 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.06 0.76 8.14 -51.92 -0.42 0.33 15 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.14 1.87 7.61 -52.49 -0.40 1.47 15 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 15 28 H 0.14 2.51 5.67 -52.49 -0.30 2.22 15 29 H 0.30 6.69 8.26 -40.82 -0.34 6.36 15 LS Contribution 280.13 15.07 4.22 4.22 Total: -1.00 -31.86 280.13 -4.59 -36.45 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -1.78 Total: 2.06 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.93 Total: -6.24 kcal Atomic # 7 Polarization: -19.43 SS G_CDS: 0.86 Total: -18.57 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.92 Total: -29.74 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.04 Total: 11.82 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.86 -4.59 -36.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307358982.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.019 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds