Wall clock time and date at job start Mon Mar 30 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34705 * 117.00300 * 2 1 4 4 O 1.21471 * 119.99838 * 359.97438 * 3 2 1 5 5 C 1.47744 * 120.00283 * 180.02562 * 3 2 1 6 6 C 1.39690 * 120.11208 * 359.72164 * 5 3 2 7 7 C 1.37997 * 119.99007 * 179.76678 * 6 5 3 8 8 C 1.38236 * 120.23144 * 0.49451 * 7 6 5 9 9 C 1.38993 * 120.22977 * 359.78208 * 8 7 6 10 10 O 1.35731 * 120.00032 * 179.97438 * 9 8 7 11 11 C 1.22313 * 116.99679 * 354.25233 * 10 9 8 12 12 H 1.07997 * 120.00303 * 5.10387 * 11 10 9 13 13 C 1.46635 * 120.00052 * 185.10265 * 11 10 9 14 14 N 1.29372 * 120.00000 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00209 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47649 * 89.99558 * 15 13 11 17 17 H 1.48505 * 109.47013 * 209.99851 * 15 13 11 18 18 H 1.48497 * 109.46940 * 329.99661 * 15 13 11 19 19 C 1.38665 * 120.00334 * 359.95520 * 9 8 7 20 20 N 1.48021 * 120.11033 * 179.97438 * 19 9 8 21 21 O 1.31704 * 119.99736 * 270.02460 * 20 19 9 22 22 O 1.31699 * 120.00096 * 90.02850 * 20 19 9 23 23 H 1.09002 * 109.47173 * 300.00301 * 1 2 3 24 24 H 1.09011 * 109.47031 * 59.99876 * 1 2 3 25 25 H 1.08995 * 109.47821 * 179.97438 * 1 2 3 26 26 H 1.08001 * 120.00468 * 0.02562 * 6 5 3 27 27 H 1.08002 * 119.88472 * 180.25034 * 7 6 5 28 28 H 1.08002 * 119.88896 * 179.76635 * 8 7 6 29 29 H 0.97003 * 119.99933 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3021 0.1075 0.0048 7 6 5.6800 0.1826 -0.0007 8 6 6.3100 1.4131 -0.0010 9 6 5.5599 2.5833 -0.0005 10 8 6.1833 3.7889 -0.0004 11 6 7.4016 3.7841 0.1084 12 1 7.9394 2.8476 0.1158 13 6 8.1319 5.0499 0.2289 14 7 7.4877 6.1718 0.2205 15 14 9.9926 5.0426 0.3943 16 1 10.6099 5.1014 -0.9550 17 1 10.4236 6.2216 1.1878 18 1 10.4234 3.7989 1.0819 19 6 4.1747 2.5190 -0.0006 20 7 3.3736 3.7637 0.0005 21 8 3.0177 4.3166 1.1416 22 8 3.0168 4.3181 -1.1396 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.8137 -0.8558 0.0089 27 1 6.2683 -0.7231 -0.0006 28 1 7.3887 1.4654 -0.0015 29 1 7.9709 7.0091 0.2998 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307358982.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:02 Heat of formation + Delta-G solvation = -43.082813 kcal Electronic energy + Delta-G solvation = -20166.155304 eV Core-core repulsion = 16640.084130 eV Total energy + Delta-G solvation = -3526.071174 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.067 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.70202 -41.77004 -39.98034 -38.74040 -37.73346 -35.41511 -35.02212 -32.90665 -31.96533 -28.84040 -27.89115 -27.39583 -24.96497 -23.43957 -22.52301 -20.73312 -20.31498 -19.28379 -18.97333 -18.18512 -17.85604 -17.62957 -17.26812 -16.77063 -16.48679 -16.04935 -15.77385 -15.06406 -14.77499 -14.64790 -14.04797 -13.62715 -13.47274 -13.09263 -12.95850 -12.80279 -12.56679 -12.25807 -12.17015 -11.99808 -11.99659 -11.81844 -11.52554 -11.18614 -10.47199 -9.79298 -8.99003 -6.04696 -1.25902 -0.75703 0.03933 0.27064 1.19401 1.25830 1.34836 1.44250 1.52060 1.99076 2.32358 2.69709 2.84372 3.37920 3.85338 3.92142 3.98760 4.20716 4.24581 4.24897 4.43247 4.62973 4.68530 4.82678 4.93935 4.97919 5.07509 5.29609 5.50468 5.54004 5.70151 6.29561 6.33835 7.58412 8.20204 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.005971 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.771018 B = 4687.893601 C = 5450.174558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.333 6.333 3 C 0.504 3.496 4 O -0.537 6.537 5 C -0.052 4.052 6 C -0.128 4.128 7 C -0.026 4.026 8 C -0.187 4.187 9 C 0.085 3.915 10 O -0.129 6.129 11 C -0.443 4.443 12 H 0.128 0.872 13 C -0.005 4.005 14 N -0.849 5.849 15 Si 1.036 2.964 16 H -0.254 1.254 17 H -0.267 1.267 18 H -0.234 1.234 19 C -0.104 4.104 20 N 0.019 4.981 21 O -0.188 6.188 22 O -0.188 6.188 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.153 0.847 26 H 0.187 0.813 27 H 0.197 0.803 28 H 0.166 0.834 29 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.239 -16.429 0.120 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.249 6.249 3 C 0.350 3.650 4 O -0.428 6.428 5 C -0.054 4.054 6 C -0.148 4.148 7 C -0.043 4.043 8 C -0.207 4.207 9 C 0.026 3.974 10 O -0.024 6.024 11 C -0.518 4.518 12 H 0.145 0.855 13 C -0.217 4.217 14 N -0.475 5.475 15 Si 0.851 3.149 16 H -0.178 1.178 17 H -0.191 1.191 18 H -0.157 1.157 19 C -0.188 4.188 20 N 0.512 4.488 21 O -0.392 6.392 22 O -0.392 6.392 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.171 0.829 26 H 0.204 0.796 27 H 0.214 0.786 28 H 0.183 0.817 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.348 -16.213 0.118 16.217 hybrid contribution -0.306 1.584 -0.018 1.614 sum 0.042 -14.629 0.100 14.629 Atomic orbital electron populations 1.23740 0.73525 1.06710 1.02567 1.86496 1.25705 1.29255 1.83428 1.21268 0.88985 0.82380 0.72383 1.90940 1.67518 1.37487 1.46850 1.18511 0.89542 0.91351 1.06018 1.21446 0.94022 0.95897 1.03423 1.21596 0.93804 0.97761 0.91158 1.21417 1.01654 0.90126 1.07457 1.18979 0.87973 0.87675 1.02785 1.80365 1.24594 1.27785 1.69664 1.21878 0.80976 0.96756 1.52233 0.85517 1.28719 1.07476 0.91837 0.93673 1.69053 1.42693 1.00565 1.35209 0.84373 0.70032 0.80442 0.80092 1.17790 1.19100 1.15691 1.19213 0.87677 0.80455 1.31460 1.50265 0.95767 1.01878 1.00916 1.96137 1.59991 1.67089 1.15960 1.96132 1.59892 1.67075 1.16094 0.92142 0.92144 0.82906 0.79565 0.78599 0.81671 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 15 2 O -0.33 -9.27 9.81 -56.15 -0.55 -9.82 15 3 C 0.50 19.51 7.90 70.34 0.56 20.06 15 4 O -0.54 -25.35 14.34 24.71 0.35 -25.00 15 5 C -0.05 -2.04 5.87 -20.11 -0.12 -2.16 15 6 C -0.13 -3.49 9.62 22.56 0.22 -3.27 15 7 C -0.03 -0.63 10.02 22.21 0.22 -0.41 15 8 C -0.19 -6.53 9.12 22.45 0.20 -6.32 15 9 C 0.08 4.09 6.58 22.55 0.15 4.24 15 10 O -0.13 -7.37 9.04 52.10 0.47 -6.90 15 11 C -0.44 -22.65 9.48 70.01 0.66 -21.99 15 12 H 0.13 5.41 5.01 -2.91 -0.01 5.40 15 13 C 0.00 -0.25 5.69 87.25 0.50 0.25 15 14 N -0.85 -47.03 13.66 23.22 0.32 -46.71 15 15 Si 1.04 35.16 29.64 68.60 2.03 37.19 15 16 H -0.25 -8.12 7.11 99.48 0.71 -7.42 15 17 H -0.27 -8.80 7.11 99.48 0.71 -8.09 15 18 H -0.23 -7.03 7.11 99.48 0.71 -6.33 15 19 C -0.10 -5.17 6.30 36.78 0.23 -4.94 15 20 N 0.02 1.10 2.70 -45.51 -0.12 0.98 15 21 O -0.19 -11.19 19.73 6.35 0.13 -11.06 15 22 O -0.19 -11.15 19.72 6.37 0.13 -11.02 15 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 15 24 H 0.06 1.30 8.14 -2.38 -0.02 1.28 15 25 H 0.15 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.19 3.39 7.61 -2.91 -0.02 3.37 15 27 H 0.20 2.49 8.06 -2.91 -0.02 2.46 15 28 H 0.17 5.11 5.67 -2.91 -0.02 5.09 15 29 H 0.30 14.79 8.26 -92.71 -0.77 14.02 15 Total: -1.00 -80.29 280.13 7.79 -72.50 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.22 Total: 12.64 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 3.82 Total: -12.78 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.19 Total: -45.74 kcal Atomic # 8 Polarization: -64.33 SS G_CDS: 0.53 Total: -63.81 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Total: -80.29 7.79 -72.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307358982.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.417 kcal (2) G-P(sol) polarization free energy of solvation -80.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds