Wall clock time and date at job start Mon Mar 30 2020 00:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38144 * 120.02329 * 2 1 4 4 C 1.38235 * 120.08312 * 180.23135 * 3 2 1 5 5 C 1.38425 * 120.12893 * 359.48606 * 4 3 2 6 6 Cl 1.73595 * 119.97741 * 180.23561 * 5 4 3 7 7 C 1.38210 * 120.04383 * 0.25417 * 5 4 3 8 8 C 1.38857 * 120.02277 * 179.71818 * 2 1 3 9 9 N 1.39926 * 120.06251 * 359.97438 * 8 2 1 10 10 C 1.34783 * 119.99818 * 145.30761 * 9 8 2 11 11 O 1.21288 * 119.99746 * 4.50094 * 10 9 8 12 12 C 1.50692 * 119.99971 * 184.50238 * 10 9 8 13 13 C 1.53004 * 109.47133 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47139 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99805 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99804 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00292 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99992 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47292 * 89.99608 * 18 16 14 20 20 H 1.48499 * 109.46947 * 209.99801 * 18 16 14 21 21 H 1.48504 * 109.46852 * 329.99503 * 18 16 14 22 22 H 1.09000 * 109.47502 * 270.28196 * 1 2 3 23 23 H 1.09002 * 109.46912 * 30.28511 * 1 2 3 24 24 H 1.09005 * 109.46895 * 150.27997 * 1 2 3 25 25 H 1.08005 * 119.95647 * 359.97061 * 3 2 1 26 26 H 1.07999 * 119.93651 * 179.76731 * 4 3 2 27 27 H 1.07996 * 120.04198 * 179.97438 * 7 5 4 28 28 H 0.96994 * 120.00751 * 325.31079 * 9 8 2 29 29 H 1.08999 * 109.47557 * 299.99775 * 12 10 9 30 30 H 1.08993 * 109.47791 * 60.00220 * 12 10 9 31 31 H 1.09000 * 109.47199 * 299.99906 * 13 12 10 32 32 H 1.08996 * 109.47492 * 59.99671 * 13 12 10 33 33 H 0.96996 * 120.00471 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5806 1.1975 -0.0048 5 6 4.2767 0.0011 0.0011 6 17 6.0126 0.0075 0.0011 7 6 3.5905 -1.1987 0.0065 8 6 2.2018 -1.2022 0.0059 9 7 1.5040 -2.4151 0.0124 10 6 1.9995 -3.4812 -0.6467 11 8 3.0885 -3.4141 -1.1766 12 6 1.2006 -4.7565 -0.7252 13 6 1.9845 -5.8011 -1.5224 14 6 1.1858 -7.0767 -1.6004 15 1 0.2164 -7.1365 -1.1282 16 6 1.6928 -8.1673 -2.2745 17 7 2.8732 -8.0943 -2.8499 18 14 0.7026 -9.7483 -2.3719 19 1 -0.1622 -9.7172 -3.5786 20 1 1.6273 -10.9072 -2.4552 21 1 -0.1445 -9.8772 -1.1589 22 1 -0.3634 0.0051 1.0276 23 1 -0.3633 0.8874 -0.5183 24 1 -0.3633 -0.8925 -0.5095 25 1 1.6579 2.1312 -0.0005 26 1 4.1185 2.1340 -0.0086 27 1 4.1336 -2.1321 0.0107 28 1 0.6636 -2.4886 0.4912 29 1 1.0155 -5.1319 0.2812 30 1 0.2497 -4.5598 -1.2202 31 1 2.1700 -5.4260 -2.5289 32 1 2.9353 -5.9979 -1.0271 33 1 3.2297 -8.8614 -3.3245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292702368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:05 Heat of formation + Delta-G solvation = -34.964828 kcal Electronic energy + Delta-G solvation = -17245.469825 eV Core-core repulsion = 14296.292932 eV Total energy + Delta-G solvation = -2949.176893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.51760 -38.53741 -36.56318 -34.58368 -33.56456 -32.49778 -31.28035 -29.69988 -26.95905 -25.75810 -23.34481 -21.81450 -21.13621 -19.80731 -17.77698 -17.05218 -15.98577 -15.89360 -15.57013 -14.75935 -14.56038 -14.38518 -14.04935 -13.59564 -13.37785 -12.96314 -12.75079 -12.52131 -12.23534 -11.69981 -11.67290 -11.32306 -11.22558 -10.97660 -10.95286 -10.64156 -10.20262 -10.04455 -9.74605 -9.30066 -9.12816 -8.69033 -8.36984 -8.10568 -6.00223 -4.05297 1.03530 1.22962 2.12094 2.95587 3.25220 3.31001 3.37658 3.39930 3.60416 4.43948 4.63791 4.76401 4.95716 5.10506 5.26985 5.31060 5.34972 5.39639 5.56087 5.74728 5.82586 6.04566 6.08730 6.12023 6.23664 6.29832 6.39712 6.76751 6.91468 7.57103 7.68666 7.77792 8.00723 8.30541 8.50684 9.02513 9.58763 11.10645 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.003986 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.774419 B = 7023.602319 C = 7951.244171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C -0.092 4.092 4 C -0.132 4.132 5 C -0.020 4.020 6 Cl -0.071 7.071 7 C -0.113 4.113 8 C 0.169 3.831 9 N -0.683 5.683 10 C 0.508 3.492 11 O -0.509 6.509 12 C -0.128 4.128 13 C 0.036 3.964 14 C -0.529 4.529 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.153 0.847 28 H 0.410 0.590 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 19.327 8.275 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.119 4.119 3 C -0.111 4.111 4 C -0.151 4.151 5 C -0.047 4.047 6 Cl -0.043 7.043 7 C -0.134 4.134 8 C 0.073 3.927 9 N -0.330 5.330 10 C 0.298 3.702 11 O -0.382 6.382 12 C -0.168 4.168 13 C -0.001 4.001 14 C -0.568 4.568 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.171 0.829 28 H 0.247 0.753 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.454 19.155 7.747 20.808 hybrid contribution -0.687 -0.892 0.088 1.129 sum -3.141 18.263 7.835 20.120 Atomic orbital electron populations 1.20742 0.90563 1.03404 1.02403 1.19808 0.96489 0.91768 1.03858 1.20728 0.93117 0.97214 1.00052 1.20939 0.94192 0.96692 1.03317 1.20723 0.84581 0.94673 1.04769 1.98365 1.10030 1.98941 1.96914 1.21266 0.93028 0.98467 1.00675 1.17507 0.90633 0.85631 0.98925 1.43955 1.26071 1.09439 1.53513 1.21928 0.87230 0.85001 0.76045 1.90687 1.20841 1.82548 1.44125 1.21918 0.99856 0.91513 1.03506 1.18927 0.95090 0.90861 0.95262 1.21182 1.03808 0.97172 1.34600 0.92536 1.25019 0.94974 0.98869 0.95427 1.69991 1.17083 1.30763 1.34861 0.86582 0.79866 0.83048 0.78401 1.20644 1.21186 1.19858 0.90993 0.91039 0.91254 0.84993 0.85150 0.82925 0.75330 0.89736 0.89738 0.95693 0.95675 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.47 36.01 0.34 -0.58 16 2 C -0.12 -1.30 5.90 -104.43 -0.62 -1.91 16 3 C -0.09 -0.93 9.70 -39.62 -0.38 -1.31 16 4 C -0.13 -1.47 9.83 -39.51 -0.39 -1.86 16 5 C -0.02 -0.28 6.32 -39.52 -0.25 -0.53 16 6 Cl -0.07 -0.94 28.95 -51.86 -1.50 -2.44 16 7 C -0.11 -1.78 8.48 -39.36 -0.33 -2.11 16 8 C 0.17 2.37 6.29 -83.70 -0.53 1.85 16 9 N -0.68 -9.44 4.75 -9.87 -0.05 -9.49 16 10 C 0.51 9.33 7.67 -10.99 -0.08 9.25 16 11 O -0.51 -11.47 13.40 5.55 0.07 -11.39 16 12 C -0.13 -2.45 5.64 -27.89 -0.16 -2.61 16 13 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 14 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 24 H 0.07 0.58 7.17 -51.93 -0.37 0.21 16 25 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 26 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 27 H 0.15 2.77 6.20 -52.49 -0.33 2.45 16 28 H 0.41 4.18 7.85 -40.82 -0.32 3.86 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -32.93 301.46 -8.08 -41.00 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -3.93 Total: 0.18 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.93 Total: -12.38 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.69 Total: -35.84 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.93 -8.08 -41.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292702368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.039 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds