Wall clock time and date at job start Mon Mar 30 2020 00:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38144 * 120.02329 * 2 1 4 4 C 1.38235 * 120.08312 * 180.23135 * 3 2 1 5 5 C 1.38425 * 120.12893 * 359.48606 * 4 3 2 6 6 Cl 1.73595 * 119.97741 * 180.23561 * 5 4 3 7 7 C 1.38210 * 120.04383 * 0.25417 * 5 4 3 8 8 C 1.38857 * 120.02277 * 179.71818 * 2 1 3 9 9 N 1.39926 * 120.06251 * 359.97438 * 8 2 1 10 10 C 1.34783 * 119.99818 * 145.30761 * 9 8 2 11 11 O 1.21288 * 119.99746 * 4.50094 * 10 9 8 12 12 C 1.50692 * 119.99971 * 184.50238 * 10 9 8 13 13 C 1.53004 * 109.47133 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47139 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99805 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99804 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00292 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99992 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47292 * 89.99608 * 18 16 14 20 20 H 1.48499 * 109.46947 * 209.99801 * 18 16 14 21 21 H 1.48504 * 109.46852 * 329.99503 * 18 16 14 22 22 H 1.09000 * 109.47502 * 270.28196 * 1 2 3 23 23 H 1.09002 * 109.46912 * 30.28511 * 1 2 3 24 24 H 1.09005 * 109.46895 * 150.27997 * 1 2 3 25 25 H 1.08005 * 119.95647 * 359.97061 * 3 2 1 26 26 H 1.07999 * 119.93651 * 179.76731 * 4 3 2 27 27 H 1.07996 * 120.04198 * 179.97438 * 7 5 4 28 28 H 0.96994 * 120.00751 * 325.31079 * 9 8 2 29 29 H 1.08999 * 109.47557 * 299.99775 * 12 10 9 30 30 H 1.08993 * 109.47791 * 60.00220 * 12 10 9 31 31 H 1.09000 * 109.47199 * 299.99906 * 13 12 10 32 32 H 1.08996 * 109.47492 * 59.99671 * 13 12 10 33 33 H 0.96996 * 120.00471 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5806 1.1975 -0.0048 5 6 4.2767 0.0011 0.0011 6 17 6.0126 0.0075 0.0011 7 6 3.5905 -1.1987 0.0065 8 6 2.2018 -1.2022 0.0059 9 7 1.5040 -2.4151 0.0124 10 6 1.9995 -3.4812 -0.6467 11 8 3.0885 -3.4141 -1.1766 12 6 1.2006 -4.7565 -0.7252 13 6 1.9845 -5.8011 -1.5224 14 6 1.1858 -7.0767 -1.6004 15 1 0.2164 -7.1365 -1.1282 16 6 1.6928 -8.1673 -2.2745 17 7 2.8732 -8.0943 -2.8499 18 14 0.7026 -9.7483 -2.3719 19 1 -0.1622 -9.7172 -3.5786 20 1 1.6273 -10.9072 -2.4552 21 1 -0.1445 -9.8772 -1.1589 22 1 -0.3634 0.0051 1.0276 23 1 -0.3633 0.8874 -0.5183 24 1 -0.3633 -0.8925 -0.5095 25 1 1.6579 2.1312 -0.0005 26 1 4.1185 2.1340 -0.0086 27 1 4.1336 -2.1321 0.0107 28 1 0.6636 -2.4886 0.4912 29 1 1.0155 -5.1319 0.2812 30 1 0.2497 -4.5598 -1.2202 31 1 2.1700 -5.4260 -2.5289 32 1 2.9353 -5.9979 -1.0271 33 1 3.2297 -8.8614 -3.3245 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292702368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:05 Heat of formation + Delta-G solvation = -55.655973 kcal Electronic energy + Delta-G solvation = -17246.367061 eV Core-core repulsion = 14296.292932 eV Total energy + Delta-G solvation = -2950.074128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.71559 -39.75551 -37.60321 -35.83144 -35.57897 -33.38326 -33.13731 -30.89257 -28.05610 -27.36635 -24.73166 -23.23996 -22.26760 -21.25156 -18.99286 -18.71859 -17.66394 -16.96348 -16.82600 -16.45623 -16.04082 -15.56278 -15.04977 -14.86558 -14.52417 -14.21761 -14.14070 -13.77998 -13.51107 -13.24711 -12.83476 -12.64668 -12.51186 -12.45932 -12.26849 -12.01103 -11.94093 -11.65962 -11.34425 -11.29740 -10.77279 -10.57070 -9.68792 -9.14494 -8.18515 -6.32737 0.06979 0.23314 1.11082 1.42698 1.45214 1.56037 1.57408 2.05078 2.43593 2.62297 3.15098 3.77562 3.89048 3.94905 4.08853 4.27349 4.40654 4.47005 4.52076 4.72675 4.78815 4.87371 5.02904 5.10430 5.22466 5.28668 5.35407 5.44075 5.49883 5.60580 5.83613 5.89301 6.15802 6.40848 6.85684 7.15975 7.37957 8.94155 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.027026 B = 0.003986 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.774419 B = 7023.602319 C = 7951.244171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.104 4.104 3 C -0.084 4.084 4 C -0.123 4.123 5 C -0.038 4.038 6 Cl -0.079 7.079 7 C -0.142 4.142 8 C 0.141 3.859 9 N -0.659 5.659 10 C 0.510 3.490 11 O -0.563 6.563 12 C -0.115 4.115 13 C 0.041 3.959 14 C -0.542 4.542 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.254 1.254 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.176 0.824 26 H 0.157 0.843 27 H 0.115 0.885 28 H 0.430 0.570 29 H 0.111 0.889 30 H 0.113 0.887 31 H -0.017 1.017 32 H -0.017 1.017 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.850 21.081 9.418 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.107 4.107 3 C -0.102 4.102 4 C -0.142 4.142 5 C -0.065 4.065 6 Cl -0.050 7.050 7 C -0.163 4.163 8 C 0.046 3.954 9 N -0.306 5.306 10 C 0.300 3.700 11 O -0.440 6.440 12 C -0.155 4.155 13 C 0.003 3.997 14 C -0.580 4.580 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.797 3.203 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.177 1.177 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.084 0.916 25 H 0.193 0.807 26 H 0.175 0.825 27 H 0.133 0.867 28 H 0.270 0.730 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.001 0.999 32 H 0.001 0.999 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.851 20.952 8.937 23.518 hybrid contribution 0.373 -1.299 -0.243 1.374 sum -5.478 19.653 8.693 22.177 Atomic orbital electron populations 1.20869 0.87829 1.04318 1.04139 1.20215 0.98371 0.90675 1.01439 1.21255 0.92649 0.98451 0.97846 1.21330 0.95046 0.96482 1.01367 1.20882 0.84436 0.95134 1.06097 1.98353 1.10664 1.98959 1.97022 1.21110 0.94190 0.97843 1.03170 1.17704 0.90223 0.86462 1.01032 1.43494 1.26364 1.08479 1.52309 1.21701 0.86357 0.85865 0.76048 1.90687 1.23033 1.83507 1.46790 1.21666 0.99635 0.90207 1.03982 1.18709 0.94361 0.92984 0.93661 1.21707 1.04581 0.97583 1.34141 0.90311 1.26132 0.96038 1.03294 0.94933 1.70179 1.19452 1.32043 1.36183 0.85326 0.78140 0.77532 0.79280 1.19716 1.21391 1.17739 0.88686 0.88908 0.91615 0.80712 0.82546 0.86748 0.72997 0.87052 0.86922 0.99902 0.99905 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.47 71.24 0.67 -0.66 16 2 C -0.10 -2.00 5.90 -19.74 -0.12 -2.12 16 3 C -0.08 -1.34 9.70 22.25 0.22 -1.13 16 4 C -0.12 -2.44 9.83 22.31 0.22 -2.22 16 5 C -0.04 -1.06 6.32 22.31 0.14 -0.92 16 6 Cl -0.08 -2.15 28.95 -2.72 -0.08 -2.23 16 7 C -0.14 -4.65 8.48 22.42 0.19 -4.46 16 8 C 0.14 3.87 6.29 38.15 0.24 4.11 16 9 N -0.66 -17.75 4.75 -303.51 -1.44 -19.19 16 10 C 0.51 19.28 7.67 87.65 0.67 19.95 16 11 O -0.56 -27.31 13.40 -3.06 -0.04 -27.35 16 12 C -0.12 -4.40 5.64 29.85 0.17 -4.23 16 13 C 0.04 2.22 4.26 29.85 0.13 2.34 16 14 C -0.54 -30.32 9.11 25.60 0.23 -30.09 16 15 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 17 N -0.94 -59.51 13.29 21.45 0.28 -59.22 16 18 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.25 -10.53 7.11 99.48 0.71 -9.83 16 22 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 24 H 0.06 0.85 7.17 -2.38 -0.02 0.83 16 25 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 26 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 27 H 0.11 4.60 6.20 -2.91 -0.02 4.59 16 28 H 0.43 7.76 7.85 -92.71 -0.73 7.03 16 29 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 31 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 32 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 33 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -77.69 301.46 4.38 -73.31 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.40 Total: 8.13 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 3.23 Total: -19.33 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.16 Total: -78.41 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.04 Total: -27.35 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -77.69 4.38 -73.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292702368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.650 kcal (2) G-P(sol) polarization free energy of solvation -77.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds