Wall clock time and date at job start Mon Mar 30 2020 01:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48492 * 109.47539 * 240.00019 * 3 2 1 5 5 H 1.48500 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47031 * 119.99672 * 3 2 1 7 7 C 1.37880 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99965 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46863 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46548 * 179.97438 * 10 9 7 12 12 O 1.45201 * 109.46802 * 179.97438 * 11 10 9 13 13 C 1.34767 * 117.00373 * 180.02562 * 12 11 10 14 14 O 1.21522 * 119.99406 * 359.97438 * 13 12 11 15 15 C 1.47378 * 120.00506 * 180.02562 * 13 12 11 16 16 C 1.39839 * 120.06726 * 0.22190 * 15 13 12 17 17 C 1.37619 * 119.96544 * 180.27959 * 16 15 13 18 18 C 1.39162 * 120.09847 * 359.49480 * 17 16 15 19 19 N 1.39160 * 119.92849 * 180.23782 * 18 17 16 20 20 C 1.39399 * 120.13949 * 0.25297 * 18 17 16 21 21 F 1.35096 * 119.98537 * 180.02562 * 20 18 17 22 22 C 1.37771 * 120.03268 * 0.02562 * 20 18 17 23 23 H 0.97006 * 119.99283 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46992 * 60.00128 * 9 7 2 25 25 H 1.08995 * 109.47179 * 299.99901 * 9 7 2 26 26 H 1.08995 * 109.47305 * 60.00205 * 10 9 7 27 27 H 1.09004 * 109.46892 * 299.99588 * 10 9 7 28 28 H 1.09003 * 109.46980 * 60.00394 * 11 10 9 29 29 H 1.08995 * 109.47352 * 299.99700 * 11 10 9 30 30 H 1.08003 * 120.01802 * 0.05567 * 16 15 13 31 31 H 1.08002 * 119.95379 * 179.77629 * 17 16 15 32 32 H 0.96997 * 119.99975 * 359.97438 * 19 18 17 33 33 H 0.97004 * 119.99562 * 180.02562 * 19 18 17 34 34 H 1.07998 * 120.04996 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 6 1.4800 -4.9871 0.0025 12 8 2.4235 -6.0908 0.0031 13 6 1.9084 -7.3361 0.0032 14 8 0.7036 -7.4952 0.0032 15 6 2.8061 -8.5050 0.0043 16 6 4.1926 -8.3235 0.0101 17 6 5.0290 -9.4164 0.0053 18 6 4.4969 -10.7023 0.0055 19 7 5.3459 -11.8049 0.0057 20 6 3.1154 -10.8882 0.0051 21 9 2.6022 -12.1379 0.0058 22 6 2.2730 -9.7980 0.0040 23 1 -0.4849 0.8402 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8711 -3.6040 0.8922 27 1 2.8724 -3.6048 -0.8878 28 1 0.8538 -5.0454 -0.8878 29 1 0.8530 -5.0442 0.8922 30 1 4.6070 -7.3261 0.0145 31 1 6.0998 -9.2760 0.0061 32 1 6.3074 -11.6767 0.0054 33 1 4.9761 -12.7017 0.0054 34 1 1.2026 -9.9417 0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054413899.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:11 Heat of formation + Delta-G solvation = -144.552605 kcal Electronic energy + Delta-G solvation = -18788.502768 eV Core-core repulsion = 15406.237418 eV Total energy + Delta-G solvation = -3382.265351 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.89399 -41.56182 -39.90156 -37.77360 -35.92491 -35.72845 -33.65854 -31.72561 -30.48126 -28.82900 -25.69532 -24.39225 -23.90096 -22.14156 -21.96584 -19.33499 -18.80908 -18.45232 -18.09130 -17.63028 -17.52749 -16.80896 -16.69942 -16.47842 -16.11260 -15.62321 -14.94891 -14.92291 -14.34034 -14.06352 -14.00454 -13.71853 -13.67604 -13.40378 -12.78323 -12.52789 -12.50414 -12.30291 -12.05140 -11.87192 -11.81316 -11.42269 -11.38018 -11.22706 -10.54881 -10.01027 -8.72473 -8.19804 -6.31451 -0.31881 0.14945 1.42914 1.46091 1.46572 1.53963 1.61337 2.43260 2.63307 2.67402 3.14117 3.15818 3.61718 3.66593 4.03265 4.05410 4.10807 4.12557 4.42933 4.53021 4.68722 4.83049 4.90024 5.02138 5.08316 5.10719 5.26144 5.42390 5.53265 5.59266 5.66469 5.82289 6.20947 6.24714 6.69672 6.74406 6.84783 7.38053 8.92368 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.047576 B = 0.002849 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.388539 B = 9826.865670 C =10389.504900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.025 3.975 10 C -0.092 4.092 11 C 0.078 3.922 12 O -0.348 6.348 13 C 0.507 3.493 14 O -0.551 6.551 15 C -0.184 4.184 16 C -0.009 4.009 17 C -0.181 4.181 18 C 0.238 3.762 19 N -0.843 5.843 20 C -0.013 4.013 21 F -0.143 7.143 22 C -0.045 4.045 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.157 0.843 31 H 0.177 0.823 32 H 0.422 0.578 33 H 0.411 0.589 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.797 -24.412 0.019 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.012 4.012 10 C -0.129 4.129 11 C 0.005 3.995 12 O -0.265 6.265 13 C 0.355 3.645 14 O -0.444 6.444 15 C -0.188 4.188 16 C -0.029 4.029 17 C -0.203 4.203 18 C 0.127 3.873 19 N -0.380 5.380 20 C -0.037 4.037 21 F -0.122 7.122 22 C -0.065 4.065 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.194 0.806 32 H 0.254 0.746 33 H 0.241 0.759 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.301 -24.372 0.020 28.258 hybrid contribution -0.609 0.482 0.000 0.776 sum 13.692 -23.890 0.020 27.536 Atomic orbital electron populations 1.70105 1.07958 1.27972 1.51498 1.26033 0.95780 1.03598 0.94624 0.85430 0.78172 0.77691 0.79341 1.18950 1.21080 1.18963 1.21612 0.93828 0.91797 1.50833 0.91447 1.18939 0.94321 0.92572 0.95393 1.21452 0.98687 0.90015 1.02793 1.23161 0.91028 0.83576 1.01774 1.86501 1.41422 1.14829 1.83713 1.21513 0.87157 0.83963 0.71852 1.90811 1.17867 1.87237 1.48455 1.18525 0.93683 0.89141 1.17405 1.21498 0.90405 1.01178 0.89784 1.20812 1.02083 0.88210 1.09235 1.18097 0.87921 0.90355 0.90947 1.42432 1.09099 1.05855 1.80652 1.16827 0.90529 0.79495 1.16856 1.91449 1.87454 1.38122 1.95219 1.20913 1.00788 0.90148 0.94672 0.92716 0.98591 0.98598 0.91183 0.91177 0.92045 0.92032 0.82523 0.80566 0.74581 0.75902 0.84557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.80 5.53 30.60 0.17 -3.63 16 11 C 0.08 2.98 5.48 71.98 0.39 3.37 16 12 O -0.35 -11.69 9.46 -56.78 -0.54 -12.23 16 13 C 0.51 16.69 7.89 70.23 0.55 17.24 16 14 O -0.55 -21.59 16.13 19.77 0.32 -21.27 16 15 C -0.18 -4.59 5.87 -20.09 -0.12 -4.71 16 16 C -0.01 -0.17 9.60 22.51 0.22 0.05 16 17 C -0.18 -2.18 9.87 22.35 0.22 -1.96 16 18 C 0.24 3.20 6.76 38.48 0.26 3.46 16 19 N -0.84 -5.36 9.06 -51.23 -0.46 -5.82 16 20 C -0.01 -0.25 7.30 22.44 0.16 -0.09 16 21 F -0.14 -2.82 16.62 44.97 0.75 -2.07 16 22 C -0.05 -1.07 9.56 22.55 0.22 -0.85 16 23 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 24 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 26 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 27 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.16 2.52 7.60 -2.91 -0.02 2.50 16 31 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.42 0.32 8.83 -92.71 -0.82 -0.50 16 33 H 0.41 2.19 8.29 -92.71 -0.77 1.42 16 34 H 0.14 3.44 7.64 -2.91 -0.02 3.42 16 Total: -1.00 -71.23 308.12 4.85 -66.38 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -0.44 Total: 1.89 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 2.92 Total: -15.78 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -0.18 Total: -62.85 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.22 Total: -33.50 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.75 Total: -2.07 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -71.23 4.85 -66.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054413899.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.176 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds