Wall clock time and date at job start Mon Mar 30 2020 01:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48497 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47050 * 299.99765 * 3 2 1 6 6 H 1.48498 * 109.47220 * 59.99342 * 3 2 1 7 7 C 1.38948 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00143 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99686 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00129 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99575 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47094 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47210 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47210 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47210 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.33391 * 125.19937 * 90.00083 * 17 16 15 19 19 C 1.38423 * 114.92045 * 179.97438 * 18 17 16 20 20 C 1.33390 * 114.91979 * 359.97438 * 19 18 17 21 21 S 1.75878 * 125.20693 * 269.69344 * 17 16 15 22 22 H 0.96998 * 119.99866 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99997 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.47308 * 59.99472 * 12 10 9 25 25 H 1.09000 * 109.46976 * 299.99617 * 12 10 9 26 26 H 1.09000 * 109.47531 * 59.99538 * 13 12 10 27 27 H 1.09000 * 109.46839 * 299.99631 * 13 12 10 28 28 H 1.08997 * 109.47467 * 59.99839 * 14 13 12 29 29 H 1.09000 * 109.46955 * 299.99604 * 14 13 12 30 30 H 1.09000 * 109.47531 * 59.99583 * 15 14 13 31 31 H 1.09008 * 109.47250 * 300.00157 * 15 14 13 32 32 H 1.09000 * 109.46884 * 60.00289 * 16 15 14 33 33 H 1.09000 * 109.46955 * 299.99604 * 16 15 14 34 34 H 1.07995 * 122.54106 * 359.95411 * 18 17 16 35 35 H 1.08001 * 122.53959 * 180.02562 * 19 18 17 36 36 H 1.07998 * 125.20163 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8630 0.0011 13 6 2.2379 -6.0259 0.0016 14 6 1.4729 -7.3509 0.0029 15 6 2.4671 -8.5138 0.0040 16 6 1.7021 -9.8388 0.0059 17 6 2.6814 -10.9843 0.0064 18 6 3.1818 -11.5676 1.0967 19 6 4.0663 -12.6035 0.8502 20 6 4.2838 -12.8617 -0.4403 21 16 3.3335 -11.7615 -1.4302 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3907 0.0005 24 1 0.6167 -4.9209 -0.8885 25 1 0.6175 -4.9205 0.8914 26 1 2.8647 -5.9678 0.8915 27 1 2.8645 -5.9685 -0.8884 28 1 0.8459 -7.4093 -0.8868 29 1 0.8466 -7.4080 0.8932 30 1 3.0938 -8.4552 0.8939 31 1 3.0939 -8.4569 -0.8860 32 1 1.0752 -9.8977 -0.8838 33 1 1.0758 -9.8954 0.8962 34 1 2.9172 -11.2552 2.0960 35 1 4.5435 -13.1609 1.6426 36 1 4.9399 -13.6313 -0.8192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067272183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:41 Heat of formation + Delta-G solvation = -40.056477 kcal Electronic energy + Delta-G solvation = -16635.942203 eV Core-core repulsion = 13824.421321 eV Total energy + Delta-G solvation = -2811.520882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.37199 -38.13561 -35.84303 -33.95839 -32.65447 -31.17343 -29.40264 -26.70658 -24.88706 -23.56055 -21.92130 -20.83309 -19.43839 -18.97376 -17.77649 -17.23313 -15.88015 -15.71674 -15.51777 -14.52562 -14.39062 -14.06824 -13.72102 -13.38143 -13.21023 -12.81626 -12.63765 -12.45426 -12.28223 -11.62773 -11.56327 -11.51380 -11.09371 -10.99197 -10.79309 -10.72519 -10.66554 -10.32297 -10.22507 -10.18143 -9.49828 -8.81831 -8.68289 -8.33404 -7.93839 -6.39266 -3.79935 0.79801 1.43283 1.80496 2.54300 3.17793 3.27972 3.35586 3.96729 4.19731 4.49541 4.82308 4.84817 4.90844 5.13815 5.21619 5.26833 5.32308 5.39789 5.43383 5.58873 5.75761 5.77804 5.90217 5.92988 6.00878 6.09346 6.14856 6.16858 6.26846 6.31870 6.55940 6.64615 6.78251 7.57703 8.09515 8.64404 9.20669 9.58838 10.10504 10.78655 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.058590 B = 0.002409 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.785641 B =11620.775208 C =11752.954240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.439 3.561 11 O -0.598 6.598 12 C -0.131 4.131 13 C -0.097 4.097 14 C -0.120 4.120 15 C -0.113 4.113 16 C -0.052 4.052 17 C -0.162 4.162 18 C -0.148 4.148 19 C -0.131 4.131 20 C -0.222 4.222 21 S 0.092 5.908 22 H 0.271 0.729 23 H 0.393 0.607 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -23.554 -0.020 23.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.484 6.484 12 C -0.171 4.171 13 C -0.135 4.135 14 C -0.157 4.157 15 C -0.152 4.152 16 C -0.091 4.091 17 C -0.279 4.279 18 C -0.178 4.178 19 C -0.162 4.162 20 C -0.358 4.358 21 S 0.355 5.645 22 H 0.080 0.920 23 H 0.226 0.774 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.856 -23.197 -1.578 23.325 hybrid contribution 0.010 0.607 1.519 1.636 sum 1.866 -22.590 -0.058 22.667 Atomic orbital electron populations 1.69625 1.05926 1.27989 1.50850 1.25269 0.95644 0.99730 0.97430 0.85807 0.79707 0.81184 0.77694 1.19245 1.20757 1.20763 1.19776 0.93400 0.82418 1.47322 0.87951 1.41952 1.09233 1.04772 1.64188 1.20064 0.88318 0.85176 0.83863 1.90504 1.14151 1.87540 1.56192 1.21499 0.98938 0.94143 1.02557 1.21235 0.97463 0.91564 1.03275 1.21646 0.97961 0.94215 1.01903 1.21619 0.98336 0.92356 1.02851 1.20258 0.95086 0.90437 1.03317 1.24641 1.04938 1.02936 0.95431 1.20146 1.00114 0.98071 0.99464 1.20178 1.00341 0.99295 0.96388 1.25581 1.07444 1.05839 0.96912 1.84347 1.41060 1.29027 1.10070 0.91961 0.77405 0.90666 0.90670 0.91572 0.91577 0.92051 0.92002 0.91515 0.91703 0.90748 0.89902 0.84318 0.84467 0.82124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 8 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 9 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 10 C 0.44 10.64 7.78 -10.98 -0.09 10.55 16 11 O -0.60 -16.63 15.56 5.55 0.09 -16.55 16 12 C -0.13 -2.31 5.70 -27.88 -0.16 -2.47 16 13 C -0.10 -1.53 4.50 -26.73 -0.12 -1.65 16 14 C -0.12 -1.39 5.21 -26.73 -0.14 -1.53 16 15 C -0.11 -1.21 5.20 -26.73 -0.14 -1.35 16 16 C -0.05 -0.47 5.71 -27.88 -0.16 -0.63 16 17 C -0.16 -1.59 5.76 -36.00 -0.21 -1.80 16 18 C -0.15 -1.39 10.05 -41.21 -0.41 -1.80 16 19 C -0.13 -1.13 10.18 -41.21 -0.42 -1.55 16 20 C -0.22 -1.89 11.23 29.04 0.33 -1.57 16 21 S 0.09 0.86 23.33 -107.50 -2.51 -1.65 16 22 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 23 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 27 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -31.61 323.47 -8.99 -40.60 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.32 Total: 7.44 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.76 Total: -12.01 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.67 Total: -39.02 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.09 Total: -16.55 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.61 -8.99 -40.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067272183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.541 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds