Wall clock time and date at job start Mon Mar 30 2020 01:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48497 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47050 * 299.99765 * 3 2 1 6 6 H 1.48498 * 109.47220 * 59.99342 * 3 2 1 7 7 C 1.38948 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00143 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99686 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00129 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99575 * 179.97438 * 10 9 7 13 13 C 1.52996 * 109.47094 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47210 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47210 * 180.02562 * 14 13 12 16 16 C 1.53000 * 109.47210 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.33391 * 125.19937 * 90.00083 * 17 16 15 19 19 C 1.38423 * 114.92045 * 179.97438 * 18 17 16 20 20 C 1.33390 * 114.91979 * 359.97438 * 19 18 17 21 21 S 1.75878 * 125.20693 * 269.69344 * 17 16 15 22 22 H 0.96998 * 119.99866 * 0.02562 * 1 2 3 23 23 H 0.97000 * 119.99997 * 359.97438 * 9 7 2 24 24 H 1.09000 * 109.47308 * 59.99472 * 12 10 9 25 25 H 1.09000 * 109.46976 * 299.99617 * 12 10 9 26 26 H 1.09000 * 109.47531 * 59.99538 * 13 12 10 27 27 H 1.09000 * 109.46839 * 299.99631 * 13 12 10 28 28 H 1.08997 * 109.47467 * 59.99839 * 14 13 12 29 29 H 1.09000 * 109.46955 * 299.99604 * 14 13 12 30 30 H 1.09000 * 109.47531 * 59.99583 * 15 14 13 31 31 H 1.09008 * 109.47250 * 300.00157 * 15 14 13 32 32 H 1.09000 * 109.46884 * 60.00289 * 16 15 14 33 33 H 1.09000 * 109.46955 * 299.99604 * 16 15 14 34 34 H 1.07995 * 122.54106 * 359.95411 * 18 17 16 35 35 H 1.08001 * 122.53959 * 180.02562 * 19 18 17 36 36 H 1.07998 * 125.20163 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8630 0.0011 13 6 2.2379 -6.0259 0.0016 14 6 1.4729 -7.3509 0.0029 15 6 2.4671 -8.5138 0.0040 16 6 1.7021 -9.8388 0.0059 17 6 2.6814 -10.9843 0.0064 18 6 3.1818 -11.5676 1.0967 19 6 4.0663 -12.6035 0.8502 20 6 4.2838 -12.8617 -0.4403 21 16 3.3335 -11.7615 -1.4302 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3907 0.0005 24 1 0.6167 -4.9209 -0.8885 25 1 0.6175 -4.9205 0.8914 26 1 2.8647 -5.9678 0.8915 27 1 2.8645 -5.9685 -0.8884 28 1 0.8459 -7.4093 -0.8868 29 1 0.8466 -7.4080 0.8932 30 1 3.0938 -8.4552 0.8939 31 1 3.0939 -8.4569 -0.8860 32 1 1.0752 -9.8977 -0.8838 33 1 1.0758 -9.8954 0.8962 34 1 2.9172 -11.2552 2.0960 35 1 4.5435 -13.1609 1.6426 36 1 4.9399 -13.6313 -0.8192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067272183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:41 Heat of formation + Delta-G solvation = -58.105539 kcal Electronic energy + Delta-G solvation = -16636.724869 eV Core-core repulsion = 13824.421321 eV Total energy + Delta-G solvation = -2812.303548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18384 -38.92876 -36.90022 -35.95483 -33.80785 -33.21253 -30.43780 -27.90257 -26.51629 -24.57848 -22.92086 -21.86613 -20.85443 -20.09490 -19.83382 -17.96589 -17.58255 -16.86353 -16.54812 -16.33514 -15.83486 -15.66529 -14.79299 -14.46371 -14.44101 -13.97775 -13.63189 -13.49469 -13.41385 -13.28120 -12.93808 -12.65612 -12.45226 -12.43059 -12.14617 -11.91078 -11.86808 -11.75261 -11.53925 -11.53551 -11.32223 -10.34569 -10.02887 -9.50498 -9.38300 -8.48258 -5.97384 0.11926 0.75890 1.13505 1.35569 1.40491 1.55093 1.87647 2.05442 2.29525 3.19361 3.23945 3.78800 4.04661 4.12032 4.15401 4.26501 4.31178 4.45504 4.56225 4.68118 4.74565 4.80094 4.83638 4.92026 5.03041 5.08114 5.08699 5.27356 5.34796 5.40039 5.43118 5.48299 5.56931 5.65016 5.99488 6.58168 7.10953 7.55643 8.11395 8.69425 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.058590 B = 0.002409 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.785641 B =11620.775208 C =11752.954240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.076 0.924 9 N -0.575 5.575 10 C 0.432 3.568 11 O -0.640 6.640 12 C -0.120 4.120 13 C -0.093 4.093 14 C -0.108 4.108 15 C -0.109 4.109 16 C -0.046 4.046 17 C -0.178 4.178 18 C -0.155 4.155 19 C -0.142 4.142 20 C -0.223 4.223 21 S 0.069 5.931 22 H 0.278 0.722 23 H 0.397 0.603 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 -24.288 0.334 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.094 0.906 9 N -0.212 5.212 10 C 0.221 3.779 11 O -0.529 6.529 12 C -0.160 4.160 13 C -0.131 4.131 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.085 4.085 17 C -0.295 4.295 18 C -0.185 4.185 19 C -0.172 4.172 20 C -0.358 4.358 21 S 0.332 5.668 22 H 0.088 0.912 23 H 0.231 0.769 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.957 -23.946 -1.224 23.997 hybrid contribution 0.309 0.792 1.420 1.655 sum 1.266 -23.154 0.196 23.190 Atomic orbital electron populations 1.69678 1.06816 1.29290 1.50305 1.26073 0.96601 1.02488 0.96230 0.84860 0.77947 0.77001 0.78451 1.19910 1.19443 1.19428 1.19721 0.92663 0.84278 1.49997 0.90552 1.42047 1.09400 1.04892 1.64814 1.21276 0.88231 0.86763 0.81651 1.90472 1.16403 1.88430 1.57569 1.21524 0.99016 0.90534 1.04890 1.21200 0.97134 0.93300 1.01480 1.21550 0.97813 0.91754 1.03437 1.21535 0.98116 0.93090 1.01977 1.20205 0.94875 0.89114 1.04295 1.24783 1.05634 1.03561 0.95547 1.20432 0.99971 0.98111 0.99949 1.20469 1.00319 0.99344 0.97047 1.25893 1.07268 1.05856 0.96762 1.84393 1.41767 1.29804 1.10800 0.91233 0.76851 0.88206 0.88091 0.93375 0.93573 0.90630 0.90252 0.92210 0.92888 0.90122 0.88536 0.83195 0.82481 0.80127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 2 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 3 Si 0.99 43.52 29.55 68.60 2.03 45.55 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.34 -19.63 9.68 84.04 0.81 -18.82 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.58 -30.36 5.29 -306.98 -1.62 -31.98 16 10 C 0.43 21.16 7.78 87.66 0.68 21.84 16 11 O -0.64 -36.73 15.56 -3.06 -0.05 -36.78 16 12 C -0.12 -4.05 5.70 29.85 0.17 -3.88 16 13 C -0.09 -2.87 4.50 30.59 0.14 -2.73 16 14 C -0.11 -2.27 5.21 30.59 0.16 -2.11 16 15 C -0.11 -2.19 5.20 30.59 0.16 -2.03 16 16 C -0.05 -0.75 5.71 29.85 0.17 -0.58 16 17 C -0.18 -3.28 5.76 24.59 0.14 -3.14 16 18 C -0.15 -2.66 10.05 21.22 0.21 -2.45 16 19 C -0.14 -2.21 10.18 21.22 0.22 -1.99 16 20 C -0.22 -3.47 11.23 66.72 0.75 -2.72 16 21 S 0.07 1.25 23.33 -56.49 -1.32 -0.07 16 22 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 23 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 24 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 25 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 26 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 27 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -68.80 323.47 3.73 -65.07 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 0.33 Total: 27.12 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.08 Total: -18.92 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.34 Total: -81.97 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.05 Total: -36.78 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -68.80 3.73 -65.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067272183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.965 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds