Wall clock time and date at job start Mon Mar 30 2020 01:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99646 * 2 1 4 4 H 1.48497 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46768 * 299.99588 * 3 2 1 6 6 H 1.48497 * 109.47133 * 59.99471 * 3 2 1 7 7 C 1.37875 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99629 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00294 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.34773 * 119.99906 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99826 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99927 * 180.02562 * 11 10 9 14 14 C 1.53008 * 109.47139 * 179.97438 * 13 11 10 15 15 O 1.42895 * 109.47006 * 179.97438 * 14 13 11 16 16 C 1.35951 * 116.99758 * 179.97438 * 15 14 13 17 17 C 1.38708 * 120.03040 * 0.28885 * 16 15 14 18 18 C 1.38147 * 119.96935 * 180.25012 * 17 16 15 19 19 C 1.38455 * 120.02958 * 359.46222 * 18 17 16 20 20 F 1.35101 * 119.97206 * 180.29906 * 19 18 17 21 21 C 1.38452 * 120.06193 * 0.28172 * 19 18 17 22 22 C 1.38156 * 120.03063 * 359.97438 * 21 19 18 23 23 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46403 * 60.00322 * 9 7 2 25 25 H 1.08995 * 109.47035 * 300.00389 * 9 7 2 26 26 H 0.96998 * 119.99698 * 0.02562 * 10 9 7 27 27 H 1.08997 * 109.47470 * 60.00043 * 13 11 10 28 28 H 1.09003 * 109.47335 * 299.99268 * 13 11 10 29 29 H 1.09005 * 109.46539 * 60.00110 * 14 13 11 30 30 H 1.08995 * 109.46786 * 300.00247 * 14 13 11 31 31 H 1.07998 * 120.01328 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.98838 * 179.74746 * 18 17 16 33 33 H 1.07997 * 119.98751 * 179.97438 * 21 19 18 34 34 H 1.07999 * 120.02057 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0015 12 8 0.5616 -5.1049 0.0006 13 6 2.7333 -6.0287 0.0033 14 6 1.9684 -7.3538 0.0032 15 8 2.8970 -8.4398 0.0044 16 6 2.3774 -9.6962 0.0049 17 6 1.0024 -9.8787 -0.0016 18 6 0.4758 -11.1558 0.0042 19 6 1.3198 -12.2534 0.0054 20 9 0.8035 -13.5018 0.0049 21 6 2.6925 -12.0727 0.0066 22 6 3.2219 -10.7966 0.0061 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5570 -0.8898 25 1 0.6241 -2.5567 0.8902 26 1 3.1568 -3.4353 0.0028 27 1 3.3586 -5.9707 0.8942 28 1 3.3613 -5.9713 -0.8858 29 1 1.3428 -7.4120 -0.8876 30 1 1.3407 -7.4110 0.8924 31 1 0.3439 -9.0227 -0.0076 32 1 -0.5948 -11.2983 0.0032 33 1 3.3498 -12.9296 0.0079 34 1 4.2927 -10.6558 0.0066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925730.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:32 Heat of formation + Delta-G solvation = -129.326488 kcal Electronic energy + Delta-G solvation = -18618.573140 eV Core-core repulsion = 15236.968043 eV Total energy + Delta-G solvation = -3381.605097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.83377 -41.23821 -40.45437 -38.26433 -36.18993 -34.38727 -33.16932 -32.17284 -30.25339 -29.23719 -26.06175 -24.48153 -23.66964 -22.79079 -21.32201 -19.59796 -18.76645 -18.36236 -17.67383 -17.46184 -17.25284 -17.00108 -16.56340 -16.05590 -16.02243 -15.65660 -15.21385 -14.58597 -14.54487 -14.42542 -14.03975 -13.88416 -13.67921 -13.62055 -12.93134 -12.79209 -12.67638 -12.67097 -12.22200 -11.79784 -11.70174 -11.46009 -10.87914 -10.82311 -10.20242 -9.85791 -9.14542 -8.29857 -6.46047 0.14471 0.17553 1.44023 1.44625 1.58093 1.70283 1.81505 2.36184 2.54873 2.80432 3.05597 3.30745 3.60277 3.76815 3.80325 3.94936 4.09058 4.11295 4.29612 4.42142 4.59100 4.74130 4.79412 4.90925 5.11012 5.12040 5.12920 5.23120 5.23904 5.47555 5.66905 5.68325 5.84344 6.27802 6.65325 6.85559 7.22995 7.44670 8.82494 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.068436 B = 0.002575 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.042962 B =10870.312220 C =11253.605488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.264 3.736 10 N -0.704 5.704 11 C 0.501 3.499 12 O -0.603 6.603 13 C -0.123 4.123 14 C 0.079 3.921 15 O -0.313 6.313 16 C 0.110 3.890 17 C -0.191 4.191 18 C -0.117 4.117 19 C 0.040 3.960 20 F -0.149 7.149 21 C -0.108 4.108 22 C -0.123 4.123 23 H 0.268 0.732 24 H -0.011 1.011 25 H -0.011 1.011 26 H 0.411 0.589 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.167 0.833 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.622 -21.173 0.011 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.141 3.859 10 N -0.354 5.354 11 C 0.288 3.712 12 O -0.486 6.486 13 C -0.162 4.162 14 C 0.003 3.997 15 O -0.227 6.227 16 C 0.064 3.936 17 C -0.209 4.209 18 C -0.136 4.136 19 C 0.021 3.979 20 F -0.128 7.128 21 C -0.127 4.127 22 C -0.142 4.142 23 H 0.077 0.923 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.248 0.752 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.824 -21.168 0.010 22.934 hybrid contribution -0.411 0.935 0.000 1.021 sum 8.413 -20.234 0.010 21.913 Atomic orbital electron populations 1.70138 1.08262 1.28503 1.50116 1.26062 0.95770 1.03925 0.93932 0.85117 0.79150 0.77385 0.77611 1.17558 1.20554 1.20564 1.21662 0.94391 0.90547 1.52642 0.89672 1.18578 0.88735 0.84302 0.94286 1.46167 1.11453 1.05417 1.72369 1.21064 0.89423 0.84994 0.75681 1.90662 1.19438 1.85605 1.52909 1.21377 0.97726 0.88851 1.08274 1.22373 0.90897 0.83834 1.02585 1.85967 1.36112 1.12111 1.88526 1.19305 0.92214 0.85092 0.96997 1.21339 0.94553 0.98419 1.06619 1.21128 1.01288 0.90929 1.00229 1.17809 0.92805 0.79297 1.08004 1.91471 1.87619 1.39167 1.94509 1.21228 0.93080 0.98586 0.99772 1.20559 1.01236 0.88737 1.03651 0.92268 0.99258 0.99264 0.75244 0.85332 0.85325 0.91637 0.91631 0.84303 0.83353 0.81519 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.98 41.54 29.54 68.60 2.03 43.57 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.55 -29.38 9.28 25.60 0.24 -29.14 16 8 H 0.09 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.26 14.03 5.43 85.63 0.46 14.50 16 10 N -0.70 -27.93 5.55 -466.80 -2.59 -30.52 16 11 C 0.50 18.36 7.83 87.66 0.69 19.04 16 12 O -0.60 -27.88 15.98 -3.03 -0.05 -27.93 16 13 C -0.12 -2.86 6.07 29.85 0.18 -2.68 16 14 C 0.08 1.90 4.03 71.98 0.29 2.19 16 15 O -0.31 -6.91 10.14 -92.99 -0.94 -7.86 16 16 C 0.11 2.29 6.69 22.50 0.15 2.44 16 17 C -0.19 -4.02 9.04 22.36 0.20 -3.82 16 18 C -0.12 -2.27 10.02 22.30 0.22 -2.05 16 19 C 0.04 0.77 7.30 22.37 0.16 0.93 16 20 F -0.15 -3.04 17.27 44.97 0.78 -2.26 16 21 C -0.11 -1.67 10.02 22.30 0.22 -1.45 16 22 C -0.12 -2.03 9.99 22.36 0.22 -1.81 16 23 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 24 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 26 H 0.41 13.12 8.32 -92.71 -0.77 12.35 16 27 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 1.68 7.61 -2.38 -0.02 1.66 16 30 H 0.07 1.68 7.63 -2.39 -0.02 1.66 16 31 H 0.14 2.96 6.30 -2.91 -0.02 2.95 16 32 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 33 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 34 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.68 306.72 3.37 -66.31 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.35 Total: 15.07 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 3.51 Total: -1.25 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.30 Total: -85.66 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.99 Total: -35.78 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -69.68 3.37 -66.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925730.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.014 kcal (2) G-P(sol) polarization free energy of solvation -69.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds