Wall clock time and date at job start Mon Mar 30 2020 01:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48503 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47067 * 300.00203 * 3 2 1 6 6 H 1.48494 * 109.46929 * 60.00751 * 3 2 1 7 7 C 1.37882 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00567 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99375 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46848 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47119 * 180.02562 * 11 10 9 13 13 C 1.38390 * 120.00077 * 180.02562 * 12 11 10 14 14 N 1.32505 * 119.17831 * 359.97438 * 13 12 11 15 15 C 1.32486 * 120.93237 * 180.02562 * 14 13 12 16 16 C 1.38132 * 119.28700 * 0.02562 * 15 14 13 17 17 N 1.48027 * 120.75139 * 180.02562 * 16 15 14 18 18 O 1.21796 * 119.99734 * 354.02161 * 17 16 15 19 19 O 1.21797 * 119.99808 * 174.01358 * 17 16 15 20 20 C 1.39640 * 118.49541 * 359.97438 * 16 15 14 21 21 N 1.38532 * 120.48955 * 180.02562 * 20 16 15 22 22 N 1.32435 * 119.17963 * 180.02562 * 13 12 11 23 23 H 0.96995 * 119.99661 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47145 * 60.00521 * 9 7 2 25 25 H 1.08996 * 109.47377 * 299.99773 * 9 7 2 26 26 H 1.08995 * 109.47054 * 60.00272 * 10 9 7 27 27 H 1.08996 * 109.46862 * 299.99895 * 10 9 7 28 28 H 1.09003 * 109.47455 * 59.99617 * 11 10 9 29 29 H 1.09000 * 109.46974 * 300.00012 * 11 10 9 30 30 H 0.96996 * 119.99717 * 359.97438 * 12 11 10 31 31 H 1.07998 * 120.35836 * 180.02562 * 15 14 13 32 32 H 0.96996 * 119.99913 * 185.59370 * 21 20 16 33 33 H 0.96998 * 119.99514 * 5.59086 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1007 -0.0006 13 6 1.9710 -7.4054 -0.0015 14 7 0.6649 -7.6288 -0.0025 15 6 0.1853 -8.8638 -0.0029 16 6 1.0637 -9.9299 -0.0018 17 7 0.5632 -11.3230 -0.0028 18 8 -0.6301 -11.5414 0.1052 19 8 1.3448 -12.2507 -0.1118 20 6 2.4345 -9.6636 -0.0008 21 7 3.3521 -10.7015 -0.0002 22 7 2.8459 -8.3996 -0.0004 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6043 -0.8905 28 1 0.8539 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.3859 -5.9234 -0.0002 31 1 -0.8810 -9.0352 -0.0041 32 1 4.2996 -10.5110 0.0823 33 1 3.0470 -11.6185 -0.0823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264212370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:19 Heat of formation + Delta-G solvation = 41.755999 kcal Electronic energy + Delta-G solvation = -19073.689022 eV Core-core repulsion = 15751.715331 eV Total energy + Delta-G solvation = -3321.973691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.46028 -41.13076 -37.36438 -36.79083 -35.54328 -34.05337 -32.91304 -31.51977 -30.75204 -27.21328 -25.90487 -24.48831 -23.58830 -22.47128 -20.70828 -19.45010 -19.32047 -18.55124 -18.23153 -17.72463 -16.60143 -16.23469 -15.92198 -15.82231 -14.68228 -14.63584 -14.40868 -14.24899 -12.81488 -12.69751 -12.40069 -12.05853 -11.96376 -11.72022 -11.35898 -11.19835 -11.07075 -10.92385 -10.88405 -10.63400 -9.98702 -9.67250 -9.61775 -9.31456 -9.22505 -8.61300 -8.45924 -6.10496 -4.13896 -0.17242 0.89059 1.21705 1.28140 2.38012 2.99383 3.24606 3.32638 3.35761 3.37505 3.73923 3.98414 4.26906 4.37751 4.78581 5.25820 5.30459 5.43645 5.55005 5.93377 6.04086 6.18687 6.39685 6.45048 6.53483 6.69894 6.82987 6.94598 7.29498 7.52311 7.54765 7.62845 7.87263 7.93305 8.27710 8.92631 9.51060 11.00722 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.053886 B = 0.002881 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.486094 B = 9716.226422 C =10208.783938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.124 4.124 11 C 0.123 3.877 12 N -0.661 5.661 13 C 0.629 3.371 14 N -0.576 5.576 15 C 0.301 3.699 16 C -0.285 4.285 17 N 0.075 4.925 18 O -0.164 6.164 19 O -0.216 6.216 20 C 0.539 3.461 21 N -0.809 5.809 22 N -0.624 5.624 23 H 0.261 0.739 24 H 0.021 0.979 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.419 0.581 31 H 0.193 0.807 32 H 0.411 0.589 33 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 -19.863 0.019 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.162 4.162 11 C 0.000 4.000 12 N -0.291 5.291 13 C 0.271 3.729 14 N -0.302 5.302 15 C 0.127 3.873 16 C -0.387 4.387 17 N 0.581 4.419 18 O -0.380 6.380 19 O -0.412 6.412 20 C 0.283 3.717 21 N -0.362 5.362 22 N -0.362 5.362 23 H 0.071 0.929 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.257 0.743 31 H 0.210 0.790 32 H 0.242 0.758 33 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 4.882 -18.040 0.004 18.689 hybrid contribution 0.747 -0.390 -0.004 0.843 sum 5.630 -18.431 0.001 19.271 Atomic orbital electron populations 1.69962 1.06057 1.26718 1.50408 1.25022 0.94867 0.99356 0.95144 0.86521 0.80047 0.83673 0.77672 1.19753 1.20945 1.20941 1.21213 0.93053 0.90847 1.51167 0.92563 1.19021 0.93716 0.90630 0.97812 1.21959 1.00022 0.92913 1.01287 1.21956 0.91308 0.83694 1.03017 1.45011 1.11329 1.00550 1.72186 1.19367 0.84532 0.86644 0.82349 1.68473 1.13479 1.21296 1.26985 1.22805 1.00902 0.84228 0.79336 1.21897 0.94827 0.83571 1.38385 1.42949 1.00552 1.02074 0.96355 1.94536 0.99034 1.90719 1.53690 1.94174 1.53116 1.36651 1.57223 1.17674 0.84928 0.87602 0.81471 1.43350 1.09135 1.08160 1.75515 1.67709 1.37552 0.96749 1.34229 0.92886 0.96109 0.96114 0.92433 0.92445 0.90706 0.90704 0.74303 0.79035 0.75822 0.72883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.19 5.27 -26.73 -0.14 -2.34 16 11 C 0.12 1.84 5.65 -4.04 -0.02 1.82 16 12 N -0.66 -8.59 5.70 -62.32 -0.36 -8.95 16 13 C 0.63 8.44 8.42 -322.89 -2.72 5.72 16 14 N -0.58 -7.63 9.58 -14.02 -0.13 -7.76 16 15 C 0.30 3.39 10.81 -17.31 -0.19 3.21 16 16 C -0.28 -3.34 6.90 -79.46 -0.55 -3.89 16 17 N 0.07 0.92 4.45 34.20 0.15 1.07 16 18 O -0.16 -2.10 18.55 -29.46 -0.55 -2.64 16 19 O -0.22 -2.58 15.88 -29.46 -0.47 -3.05 16 20 C 0.54 6.15 7.81 -154.83 -1.21 4.94 16 21 N -0.81 -6.75 8.96 31.23 0.28 -6.47 16 22 N -0.62 -7.78 10.49 -13.17 -0.14 -7.92 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.42 4.79 8.59 -40.82 -0.35 4.44 16 31 H 0.19 1.62 7.70 -52.49 -0.40 1.21 16 32 H 0.41 2.54 8.95 -40.82 -0.37 2.17 16 33 H 0.43 3.44 5.44 -40.82 -0.22 3.22 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -30.14 297.73 -9.81 -39.95 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.42 Total: 3.51 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -5.38 Total: -2.94 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.54 Total: -55.20 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -1.01 Total: -5.69 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.14 -9.81 -39.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264212370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.702 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds