Wall clock time and date at job start Mon Mar 30 2020 01:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35282 * 117.00231 * 2 1 4 4 N 1.32806 * 120.59042 * 0.02562 * 3 2 1 5 5 C 1.31795 * 121.05379 * 179.97438 * 4 3 2 6 6 N 1.31807 * 122.31291 * 359.97438 * 5 4 3 7 7 C 1.32797 * 121.04982 * 0.02562 * 6 5 4 8 8 O 1.35295 * 120.58870 * 180.02562 * 7 6 5 9 9 C 1.42892 * 117.00035 * 359.97438 * 8 7 6 10 10 C 1.40694 * 118.81860 * 359.71990 * 7 6 5 11 11 C 1.47133 * 121.02838 * 180.29588 * 10 7 6 12 12 O 1.21653 * 120.00184 * 270.23320 * 11 10 7 13 13 N 1.34775 * 119.99285 * 90.22655 * 11 10 7 14 14 C 1.46498 * 120.00627 * 0.02562 * 13 11 10 15 15 C 1.36945 * 119.99727 * 179.97438 * 13 11 10 16 16 H 1.07999 * 119.99480 * 24.26294 * 15 13 11 17 17 C 1.38993 * 120.00157 * 204.25887 * 15 13 11 18 18 N 1.31400 * 120.00309 * 12.99731 * 17 15 13 19 19 Si 1.86799 * 120.00148 * 192.99985 * 17 15 13 20 20 H 1.48510 * 109.46756 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47267 * 119.99463 * 19 17 15 22 22 H 1.48492 * 109.47274 * 239.99954 * 19 17 15 23 23 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46962 * 299.99065 * 1 2 3 25 25 H 1.08998 * 109.47450 * 59.99545 * 1 2 3 26 26 H 1.07997 * 118.84959 * 179.97438 * 5 4 3 27 27 H 1.09006 * 109.47363 * 300.00082 * 9 8 7 28 28 H 1.09005 * 109.47179 * 60.00170 * 9 8 7 29 29 H 1.09000 * 109.47189 * 180.02562 * 9 8 7 30 30 H 1.08997 * 109.47609 * 86.12689 * 14 13 11 31 31 H 1.08997 * 109.47033 * 206.13295 * 14 13 11 32 32 H 1.09003 * 109.47005 * 326.13111 * 14 13 11 33 33 H 0.96993 * 120.00120 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3315 2.3266 0.0005 5 6 1.9203 3.5057 0.0010 6 7 3.2317 3.6383 0.0016 7 6 4.0276 2.5752 0.0011 8 8 5.3726 2.7222 0.0022 9 6 5.8792 4.0583 0.0032 10 6 3.4474 1.2935 0.0060 11 6 4.2832 0.0827 0.0123 12 8 4.6334 -0.4201 -1.0387 13 7 4.6608 -0.4693 1.1824 14 6 4.2386 0.1359 2.4480 15 6 5.4383 -1.5967 1.1883 16 1 6.0648 -1.8249 0.3387 17 6 5.4211 -2.4470 2.2876 18 7 4.4865 -2.3194 3.2024 19 14 6.7266 -3.7713 2.4646 20 1 7.6579 -3.7057 1.3097 21 1 7.4840 -3.5546 3.7234 22 1 6.0762 -5.1057 2.5016 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.3069 4.3945 0.0010 27 1 5.5282 4.5807 -0.8868 28 1 5.5269 4.5798 0.8933 29 1 6.9689 4.0337 0.0036 30 1 3.2564 -0.2473 2.7243 31 1 4.9584 -0.1132 3.2277 32 1 4.1871 1.2187 2.3335 33 1 4.4747 -2.9126 3.9698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264672612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:19 Heat of formation + Delta-G solvation = -37.963487 kcal Electronic energy + Delta-G solvation = -21023.982161 eV Core-core repulsion = 17666.258823 eV Total energy + Delta-G solvation = -3357.723338 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14309 -38.95464 -38.05480 -37.56325 -34.58005 -32.46698 -31.97097 -31.03233 -27.82339 -26.77932 -26.30106 -25.29869 -23.73054 -22.93726 -19.73749 -18.99675 -18.28751 -16.92541 -16.47905 -16.32735 -15.93462 -15.51863 -15.34007 -14.80007 -14.12691 -13.97533 -13.92363 -13.59282 -13.32567 -12.82054 -12.04631 -11.78890 -11.68857 -11.59605 -11.36106 -11.28749 -11.18776 -10.89820 -10.83117 -10.29849 -10.27257 -9.46301 -9.42680 -9.01139 -8.68862 -8.28001 -7.61809 -6.29486 -3.83859 1.10283 1.40699 2.73888 3.16843 3.27983 3.35731 3.47588 3.82764 3.89294 4.14618 4.20985 4.34059 4.82152 5.12209 5.29490 5.34020 5.37027 5.39837 5.44493 5.60852 5.68793 5.72576 5.84976 5.99741 6.36079 6.87408 6.95628 7.20318 7.22934 7.38613 7.60439 8.17162 8.17404 8.52385 9.20634 9.44048 10.01620 10.75749 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.007503 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.300949 B = 3730.699211 C = 4573.067527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.277 6.277 3 C 0.408 3.592 4 N -0.596 5.596 5 C 0.364 3.636 6 N -0.597 5.597 7 C 0.403 3.597 8 O -0.282 6.282 9 C 0.039 3.961 10 C -0.230 4.230 11 C 0.511 3.489 12 O -0.577 6.577 13 N -0.427 5.427 14 C 0.120 3.880 15 C -0.302 4.302 16 H 0.101 0.899 17 C 0.030 3.970 18 N -0.879 5.879 19 Si 0.927 3.073 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.202 0.798 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.015 0.985 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.261 11.371 -1.157 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.179 6.179 3 C 0.223 3.777 4 N -0.331 5.331 5 C 0.075 3.925 6 N -0.332 5.332 7 C 0.218 3.782 8 O -0.185 6.185 9 C -0.056 4.056 10 C -0.240 4.240 11 C 0.297 3.703 12 O -0.461 6.461 13 N -0.144 5.144 14 C -0.024 4.024 15 C -0.430 4.430 16 H 0.118 0.882 17 C -0.173 4.173 18 N -0.518 5.518 19 Si 0.754 3.246 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.118 0.882 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.218 0.782 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.033 0.967 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.279 11.232 -1.457 12.496 hybrid contribution 0.610 -0.887 0.368 1.138 sum -4.670 10.345 -1.089 11.402 Atomic orbital electron populations 1.22973 0.76790 1.03485 1.02349 1.86377 1.23004 1.23056 1.85451 1.19711 0.87424 0.84957 0.85560 1.68092 1.41012 0.98751 1.25206 1.24275 0.86958 0.93941 0.87282 1.68072 1.07197 1.32605 1.25337 1.19736 0.84644 0.87780 0.85991 1.86330 1.15290 1.31041 1.85811 1.22971 0.99313 0.80876 1.02475 1.19911 0.92391 0.95342 1.16323 1.16970 0.83793 0.84566 0.84978 1.90621 1.59316 1.64820 1.31371 1.43396 1.43614 1.23942 1.03497 1.21371 1.01365 0.92151 0.87487 1.19704 1.19391 0.99441 1.04465 0.88170 1.25377 0.97363 0.98099 0.96442 1.70015 1.30982 1.38794 1.12005 0.85850 0.80437 0.80030 0.78325 1.19109 1.20669 1.20713 0.88198 0.91956 0.92131 0.78162 0.92059 0.91976 0.88233 0.93060 0.90544 0.96653 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.41 101.05 1.05 1.60 16 2 O -0.28 -5.63 10.02 -17.54 -0.18 -5.80 16 3 C 0.41 8.23 7.54 -16.20 -0.12 8.11 16 4 N -0.60 -9.83 9.36 -14.35 -0.13 -9.97 16 5 C 0.36 5.15 12.26 -92.14 -1.13 4.02 16 6 N -0.60 -9.66 9.37 -14.35 -0.13 -9.80 16 7 C 0.40 7.91 7.15 -16.21 -0.12 7.79 16 8 O -0.28 -5.38 10.02 -17.58 -0.18 -5.56 16 9 C 0.04 0.50 10.41 101.05 1.05 1.55 16 10 C -0.23 -5.19 4.01 -104.43 -0.42 -5.61 16 11 C 0.51 13.91 6.33 -12.65 -0.08 13.83 16 12 O -0.58 -17.63 16.82 5.23 0.09 -17.54 16 13 N -0.43 -11.80 3.01 -123.53 -0.37 -12.17 16 14 C 0.12 2.94 8.46 59.85 0.51 3.45 16 15 C -0.30 -8.77 9.24 -14.99 -0.14 -8.91 16 16 H 0.10 3.03 7.44 -52.49 -0.39 2.63 16 17 C 0.03 0.83 5.04 -17.46 -0.09 0.74 16 18 N -0.88 -24.00 10.84 55.50 0.60 -23.40 16 19 Si 0.93 21.11 29.57 -169.99 -5.03 16.08 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.06 0.81 8.12 -51.93 -0.42 0.38 16 25 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 26 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.06 0.73 8.12 -51.93 -0.42 0.30 16 28 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 1.29 7.81 -51.93 -0.41 0.88 16 31 H 0.08 1.91 6.82 -51.93 -0.35 1.56 16 32 H 0.01 0.33 6.73 -51.93 -0.35 -0.02 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -34.91 295.08 -3.95 -38.87 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -3.59 Total: -1.74 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 0.52 Total: 26.59 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.04 Total: -55.33 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.26 Total: -28.91 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.91 -3.95 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264672612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.903 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds