Wall clock time and date at job start Mon Mar 30 2020 01:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35282 * 117.00231 * 2 1 4 4 N 1.32806 * 120.59042 * 0.02562 * 3 2 1 5 5 C 1.31795 * 121.05379 * 179.97438 * 4 3 2 6 6 N 1.31807 * 122.31291 * 359.97438 * 5 4 3 7 7 C 1.32797 * 121.04982 * 0.02562 * 6 5 4 8 8 O 1.35295 * 120.58870 * 180.02562 * 7 6 5 9 9 C 1.42892 * 117.00035 * 359.97438 * 8 7 6 10 10 C 1.40694 * 118.81860 * 359.71990 * 7 6 5 11 11 C 1.47133 * 121.02838 * 180.29588 * 10 7 6 12 12 O 1.21653 * 120.00184 * 270.23320 * 11 10 7 13 13 N 1.34775 * 119.99285 * 90.22655 * 11 10 7 14 14 C 1.46498 * 120.00627 * 0.02562 * 13 11 10 15 15 C 1.36945 * 119.99727 * 179.97438 * 13 11 10 16 16 H 1.07999 * 119.99480 * 24.26294 * 15 13 11 17 17 C 1.38993 * 120.00157 * 204.25887 * 15 13 11 18 18 N 1.31400 * 120.00309 * 12.99731 * 17 15 13 19 19 Si 1.86799 * 120.00148 * 192.99985 * 17 15 13 20 20 H 1.48510 * 109.46756 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47267 * 119.99463 * 19 17 15 22 22 H 1.48492 * 109.47274 * 239.99954 * 19 17 15 23 23 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46962 * 299.99065 * 1 2 3 25 25 H 1.08998 * 109.47450 * 59.99545 * 1 2 3 26 26 H 1.07997 * 118.84959 * 179.97438 * 5 4 3 27 27 H 1.09006 * 109.47363 * 300.00082 * 9 8 7 28 28 H 1.09005 * 109.47179 * 60.00170 * 9 8 7 29 29 H 1.09000 * 109.47189 * 180.02562 * 9 8 7 30 30 H 1.08997 * 109.47609 * 86.12689 * 14 13 11 31 31 H 1.08997 * 109.47033 * 206.13295 * 14 13 11 32 32 H 1.09003 * 109.47005 * 326.13111 * 14 13 11 33 33 H 0.96993 * 120.00120 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2053 0.0000 4 7 1.3315 2.3266 0.0005 5 6 1.9203 3.5057 0.0010 6 7 3.2317 3.6383 0.0016 7 6 4.0276 2.5752 0.0011 8 8 5.3726 2.7222 0.0022 9 6 5.8792 4.0583 0.0032 10 6 3.4474 1.2935 0.0060 11 6 4.2832 0.0827 0.0123 12 8 4.6334 -0.4201 -1.0387 13 7 4.6608 -0.4693 1.1824 14 6 4.2386 0.1359 2.4480 15 6 5.4383 -1.5967 1.1883 16 1 6.0648 -1.8249 0.3387 17 6 5.4211 -2.4470 2.2876 18 7 4.4865 -2.3194 3.2024 19 14 6.7266 -3.7713 2.4646 20 1 7.6579 -3.7057 1.3097 21 1 7.4840 -3.5546 3.7234 22 1 6.0762 -5.1057 2.5016 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.3069 4.3945 0.0010 27 1 5.5282 4.5807 -0.8868 28 1 5.5269 4.5798 0.8933 29 1 6.9689 4.0337 0.0036 30 1 3.2564 -0.2473 2.7243 31 1 4.9584 -0.1132 3.2277 32 1 4.1871 1.2187 2.3335 33 1 4.4747 -2.9126 3.9698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264672612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:19 Heat of formation + Delta-G solvation = -66.481579 kcal Electronic energy + Delta-G solvation = -21025.218798 eV Core-core repulsion = 17666.258823 eV Total energy + Delta-G solvation = -3358.959975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.54808 -40.33811 -40.05366 -38.92782 -36.71083 -33.89692 -33.78459 -32.73905 -28.98279 -28.41710 -27.86122 -27.06252 -25.47847 -24.28352 -21.62126 -20.32677 -19.62828 -19.02976 -18.29037 -17.74256 -17.47643 -16.89268 -16.80466 -16.52751 -16.04039 -15.59139 -15.15386 -14.98524 -14.85851 -14.73263 -13.71375 -13.39331 -13.28847 -13.18226 -12.84940 -12.80514 -12.70272 -12.52229 -12.36017 -12.30570 -12.10949 -11.07716 -10.77287 -10.75791 -10.61478 -9.96701 -9.74923 -8.38784 -6.03750 -0.27349 -0.01373 1.34083 1.40579 1.44052 1.56076 1.80508 2.21590 2.25942 2.55892 2.92796 2.97866 3.08265 3.12143 3.72317 4.07520 4.12845 4.35022 4.39137 4.40901 4.41932 4.44463 4.63523 4.68614 4.85633 4.87462 5.16343 5.41235 5.61906 5.93716 5.98124 6.10078 6.41665 6.86239 7.08293 7.34728 7.93232 8.65959 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.007503 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.300949 B = 3730.699211 C = 4573.067527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.314 6.314 3 C 0.410 3.590 4 N -0.587 5.587 5 C 0.380 3.620 6 N -0.586 5.586 7 C 0.410 3.590 8 O -0.313 6.313 9 C 0.031 3.969 10 C -0.282 4.282 11 C 0.508 3.492 12 O -0.630 6.630 13 N -0.440 5.440 14 C 0.140 3.860 15 C -0.347 4.347 16 H 0.073 0.927 17 C 0.000 4.000 18 N -0.893 5.893 19 Si 0.996 3.004 20 H -0.272 1.272 21 H -0.261 1.261 22 H -0.273 1.273 23 H 0.116 0.884 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.262 0.738 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 12.997 -0.251 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.217 6.217 3 C 0.225 3.775 4 N -0.322 5.322 5 C 0.094 3.906 6 N -0.321 5.321 7 C 0.224 3.776 8 O -0.216 6.216 9 C -0.062 4.062 10 C -0.292 4.292 11 C 0.296 3.704 12 O -0.518 6.518 13 N -0.156 5.156 14 C -0.004 4.004 15 C -0.474 4.474 16 H 0.091 0.909 17 C -0.202 4.202 18 N -0.531 5.531 19 Si 0.818 3.182 20 H -0.197 1.197 21 H -0.186 1.186 22 H -0.198 1.198 23 H 0.134 0.866 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.278 0.722 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.139 0.861 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.167 12.894 -0.515 14.302 hybrid contribution 0.787 -1.289 0.085 1.512 sum -5.380 11.606 -0.430 12.799 Atomic orbital electron populations 1.23311 0.73930 1.05145 1.03710 1.86326 1.26100 1.24047 1.85227 1.19771 0.86836 0.85953 0.84957 1.68271 1.40041 0.98319 1.25572 1.25604 0.86805 0.94865 0.83374 1.68271 1.07740 1.30513 1.25585 1.19754 0.85267 0.87505 0.85042 1.86297 1.15389 1.34573 1.85365 1.23347 1.00565 0.78579 1.03733 1.19683 0.93104 0.94504 1.21878 1.17599 0.83231 0.85583 0.83985 1.90545 1.61379 1.66858 1.32979 1.43626 1.43499 1.23849 1.04643 1.21180 1.00036 0.93164 0.85984 1.19684 1.21243 1.01524 1.04993 0.90870 1.26208 0.99086 0.99684 0.95268 1.70074 1.31538 1.39373 1.12117 0.84858 0.77614 0.77080 0.78631 1.19687 1.18591 1.19786 0.86556 0.90647 0.90564 0.72242 0.90813 0.90551 0.86089 0.94205 0.91578 0.94451 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.41 113.37 1.18 2.07 16 2 O -0.31 -12.93 10.02 -85.67 -0.86 -13.79 16 3 C 0.41 16.43 7.54 85.15 0.64 17.08 16 4 N -0.59 -17.91 9.36 -312.11 -2.92 -20.83 16 5 C 0.38 9.28 12.26 180.88 2.22 11.50 16 6 N -0.59 -17.35 9.37 -312.10 -2.92 -20.27 16 7 C 0.41 15.84 7.15 85.15 0.61 16.45 16 8 O -0.31 -11.93 10.02 -85.82 -0.86 -12.79 16 9 C 0.03 0.76 10.41 113.37 1.18 1.94 16 10 C -0.28 -12.94 4.01 -19.74 -0.08 -13.02 16 11 C 0.51 28.98 6.33 86.58 0.55 29.53 16 12 O -0.63 -40.88 16.82 -4.20 -0.07 -40.95 16 13 N -0.44 -25.30 3.01 -662.96 -1.99 -27.29 16 14 C 0.14 7.00 8.46 127.77 1.08 8.08 16 15 C -0.35 -21.03 9.24 84.08 0.78 -20.25 16 16 H 0.07 4.72 7.44 -2.91 -0.02 4.70 16 17 C 0.00 -0.01 5.04 84.94 0.43 0.42 16 18 N -0.89 -49.00 10.84 21.67 0.23 -48.76 16 19 Si 1.00 43.54 29.57 68.60 2.03 45.57 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H 0.12 2.68 8.14 -2.39 -0.02 2.67 16 24 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 25 H 0.08 1.80 8.12 -2.39 -0.02 1.78 16 26 H 0.26 3.04 8.06 -2.91 -0.02 3.02 16 27 H 0.07 1.59 8.12 -2.38 -0.02 1.57 16 28 H 0.08 1.62 8.12 -2.38 -0.02 1.60 16 29 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.04 2.04 7.81 -2.39 -0.02 2.02 16 31 H 0.07 3.37 6.82 -2.39 -0.02 3.36 16 32 H 0.04 1.66 6.73 -2.39 -0.02 1.65 16 33 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -80.08 295.08 2.36 -77.72 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.14 Total: 7.61 kcal Atomic # 6 Polarization: 45.20 SS G_CDS: 8.58 Total: 53.78 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -7.60 Total: -117.15 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -1.79 Total: -67.53 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -80.08 2.36 -77.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264672612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.237 kcal (2) G-P(sol) polarization free energy of solvation -80.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds