Wall clock time and date at job start Mon Mar 30 2020 00:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35247 * 126.68936 * 2 1 4 4 C 1.42025 * 103.95051 * 180.02562 * 3 2 1 5 5 N 1.39505 * 126.89307 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99932 * 359.97438 * 5 4 3 7 7 O 1.21274 * 119.99891 * 359.72725 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.72612 * 6 5 4 9 9 N 1.46497 * 109.47115 * 180.02562 * 8 6 5 10 10 C 1.46497 * 120.00160 * 89.99794 * 9 8 6 11 11 C 1.34785 * 120.00169 * 269.99970 * 9 8 6 12 12 O 1.21687 * 119.99673 * 0.02562 * 11 9 8 13 13 C 1.46366 * 120.00149 * 179.97438 * 11 9 8 14 14 H 1.07998 * 120.00309 * 359.97438 * 13 11 9 15 15 C 1.40051 * 120.00156 * 179.97438 * 13 11 9 16 16 N 1.30676 * 119.99606 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00131 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47136 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47087 * 120.00474 * 17 15 13 20 20 H 1.48503 * 109.47098 * 240.00130 * 17 15 13 21 21 N 1.30716 * 106.21682 * 0.22339 * 4 3 2 22 22 O 1.20913 * 111.47188 * 359.60356 * 21 4 3 23 23 H 1.08999 * 109.47216 * 90.00353 * 1 2 3 24 24 H 1.08999 * 109.46863 * 210.00047 * 1 2 3 25 25 H 1.08997 * 109.47537 * 329.99651 * 1 2 3 26 26 H 1.07993 * 128.02485 * 359.97438 * 3 2 1 27 27 H 0.97000 * 120.00672 * 179.72226 * 5 4 3 28 28 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 29 29 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 30 30 H 1.09001 * 109.47064 * 90.00333 * 10 9 8 31 31 H 1.09001 * 109.47503 * 209.99782 * 10 9 8 32 32 H 1.09003 * 109.47498 * 330.00034 * 10 9 8 33 33 H 0.96999 * 119.99832 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0845 0.0000 4 6 3.6250 0.5356 -0.0006 5 7 4.8286 1.2408 -0.0014 6 6 4.8199 2.5886 -0.0021 7 8 3.7658 3.1882 -0.0071 8 6 6.1201 3.3505 0.0034 9 7 5.8431 4.7891 0.0020 10 6 5.6992 5.5085 1.2700 11 6 5.7207 5.4507 -1.1658 12 8 5.8397 4.8530 -2.2191 13 6 5.4434 6.8879 -1.1672 14 1 5.3365 7.4181 -0.2324 15 6 5.3167 7.5755 -2.3807 16 7 5.4456 6.9338 -3.5117 17 14 4.9621 9.4096 -2.3824 18 1 4.8616 9.8956 -0.9828 19 1 6.0621 10.1257 -3.0768 20 1 3.6813 9.6654 -3.0889 21 7 3.4765 -0.7631 -0.0058 22 8 2.3083 -1.0751 -0.0006 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 2.0304 2.1263 -0.0004 27 1 5.6718 0.7613 0.0023 28 1 6.6893 3.0914 0.8960 29 1 6.6973 3.0904 -0.8840 30 1 6.6726 5.8813 1.5888 31 1 5.0152 6.3466 1.1367 32 1 5.3027 4.8330 2.0281 33 1 5.3582 7.4101 -4.3522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274264655.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:37 Heat of formation + Delta-G solvation = -23.453574 kcal Electronic energy + Delta-G solvation = -20037.182694 eV Core-core repulsion = 16680.088553 eV Total energy + Delta-G solvation = -3357.094141 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.94578 -41.28788 -39.36296 -36.71300 -35.72261 -34.61246 -34.59981 -33.22240 -30.30924 -28.69674 -28.01766 -26.62911 -24.77771 -22.94170 -21.89582 -21.01078 -18.78825 -18.57372 -18.45989 -18.11413 -17.78477 -17.61769 -16.42325 -16.27131 -15.71522 -15.68725 -14.87076 -14.40320 -14.38300 -14.23901 -14.01065 -13.41724 -13.34179 -13.24101 -13.13550 -13.04201 -12.77582 -12.66542 -12.27661 -12.18761 -11.97803 -11.29197 -10.94463 -10.44179 -9.93413 -9.87050 -9.22653 -8.30659 -6.85087 0.33735 0.90460 1.36143 1.39659 1.44351 1.57893 1.76727 2.15991 2.23776 2.46224 2.79156 3.26211 3.49799 3.72564 3.96290 4.05438 4.19697 4.32489 4.41888 4.51189 4.70686 4.74810 4.85595 4.93288 5.03391 5.15184 5.29567 5.37298 5.67284 5.98025 6.13806 6.31501 6.87106 6.92562 7.22908 7.32471 8.43137 8.65510 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027891 B = 0.004501 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.662797 B = 6219.523970 C = 6603.279768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.003 4.003 3 C -0.263 4.263 4 C 0.236 3.764 5 N -0.625 5.625 6 C 0.503 3.497 7 O -0.537 6.537 8 C 0.115 3.885 9 N -0.633 5.633 10 C 0.102 3.898 11 C 0.543 3.457 12 O -0.628 6.628 13 C -0.565 4.565 14 H 0.094 0.906 15 C 0.027 3.973 16 N -0.822 5.822 17 Si 0.995 3.005 18 H -0.244 1.244 19 H -0.266 1.266 20 H -0.272 1.272 21 N -0.409 5.409 22 O 0.093 5.907 23 H 0.104 0.896 24 H 0.110 0.890 25 H 0.103 0.897 26 H 0.170 0.830 27 H 0.432 0.568 28 H 0.151 0.849 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 -9.751 11.046 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.286 4.286 4 C -0.013 4.013 5 N -0.280 5.280 6 C 0.290 3.710 7 O -0.410 6.410 8 C -0.013 4.013 9 N -0.368 5.368 10 C -0.040 4.040 11 C 0.349 3.651 12 O -0.515 6.515 13 C -0.601 4.601 14 H 0.112 0.888 15 C -0.188 4.188 16 N -0.451 5.451 17 Si 0.815 3.185 18 H -0.167 1.167 19 H -0.191 1.191 20 H -0.198 1.198 21 N -0.127 5.127 22 O 0.034 5.966 23 H 0.122 0.878 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.187 0.813 27 H 0.271 0.729 28 H 0.168 0.832 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.229 -10.596 10.316 15.686 hybrid contribution 0.108 1.138 -0.438 1.225 sum -5.121 -9.458 9.878 14.603 Atomic orbital electron populations 1.20618 0.80101 1.06404 1.05686 1.25121 0.98066 0.84359 0.99110 1.22735 0.90281 1.02273 1.13333 1.20907 0.89547 0.89160 1.01652 1.42697 1.06284 1.06175 1.72846 1.22571 0.94074 0.80695 0.73708 1.90618 1.34284 1.68669 1.47430 1.21131 0.91404 0.82369 1.06401 1.47583 1.76048 1.05736 1.07481 1.21593 1.01374 0.97014 0.84052 1.18637 0.76121 0.88842 0.81454 1.90544 1.57696 1.70599 1.32659 1.21556 1.51467 0.92466 0.94655 0.88829 1.27011 0.91744 1.05785 0.94211 1.70201 1.36716 1.39206 0.99018 0.85003 0.78324 0.75069 0.80124 1.16702 1.19085 1.19752 1.73982 0.98400 1.12774 1.27593 1.84721 1.10287 1.32637 1.68926 0.87794 0.87183 0.87832 0.81251 0.72920 0.83179 0.88277 0.92048 0.92295 0.91165 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.45 71.24 0.74 -0.21 16 2 C 0.00 -0.07 7.48 25.00 0.19 0.12 16 3 C -0.26 -8.62 9.79 22.52 0.22 -8.40 16 4 C 0.24 7.93 8.18 134.11 1.10 9.03 16 5 N -0.63 -19.51 5.42 -309.53 -1.68 -21.19 16 6 C 0.50 18.95 7.86 87.65 0.69 19.64 16 7 O -0.54 -24.78 13.71 -3.01 -0.04 -24.82 16 8 C 0.12 4.05 5.89 85.63 0.50 4.55 16 9 N -0.63 -28.14 2.36 -856.29 -2.02 -30.17 16 10 C 0.10 3.57 10.15 127.77 1.30 4.87 16 11 C 0.54 31.54 7.61 86.36 0.66 32.19 16 12 O -0.63 -41.96 14.60 -4.31 -0.06 -42.02 16 13 C -0.57 -32.15 8.74 24.83 0.22 -31.93 16 14 H 0.09 4.76 5.99 -2.91 -0.02 4.74 16 15 C 0.03 1.54 5.50 85.30 0.47 2.01 16 16 N -0.82 -50.85 11.83 21.84 0.26 -50.59 16 17 Si 1.00 41.22 29.56 68.60 2.03 43.25 16 18 H -0.24 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 21 N -0.41 -12.85 12.10 -56.33 -0.68 -13.53 16 22 O 0.09 2.55 11.19 71.23 0.80 3.35 16 23 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.17 6.28 6.22 -2.91 -0.02 6.26 16 27 H 0.43 10.13 8.82 -92.71 -0.82 9.31 16 28 H 0.15 3.45 8.07 -2.39 -0.02 3.43 16 29 H 0.10 3.75 7.42 -2.39 -0.02 3.73 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 2.25 6.09 -2.39 -0.01 2.23 16 32 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 33 H 0.27 15.31 8.29 -92.71 -0.77 14.54 16 Total: -1.00 -86.22 295.28 5.03 -81.20 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.35 Total: 22.66 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 6.08 Total: 31.87 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -4.12 Total: -115.48 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: 0.69 Total: -63.50 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -86.22 5.03 -81.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274264655.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.744 kcal (2) G-P(sol) polarization free energy of solvation -86.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds