Wall clock time and date at job start Mon Mar 30 2020 01:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31348 * 1 3 3 Si 1.86806 * 119.99891 * 2 1 4 4 H 1.48500 * 109.46903 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46858 * 299.99799 * 3 2 1 6 6 H 1.48503 * 109.47233 * 60.00001 * 3 2 1 7 7 C 1.39083 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.36798 * 119.99779 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00025 * 180.02562 * 9 7 2 11 11 O 1.21650 * 119.99961 * 359.97438 * 10 9 7 12 12 C 1.47300 * 119.99856 * 180.02562 * 10 9 7 13 13 C 1.39358 * 121.13489 * 0.02562 * 12 10 9 14 14 C 1.39027 * 121.88986 * 179.97438 * 13 12 10 15 15 C 1.36393 * 121.33814 * 0.04242 * 14 13 12 16 16 C 1.39146 * 118.75819 * 359.96025 * 15 14 13 17 17 C 1.39149 * 114.66049 * 180.02562 * 16 15 14 18 18 C 1.36185 * 117.97948 * 179.97438 * 17 16 15 19 19 C 1.39600 * 120.37742 * 0.04141 * 18 17 16 20 20 C 1.36719 * 122.21857 * 359.97438 * 19 18 17 21 21 C 1.39891 * 118.77444 * 359.92541 * 20 19 18 22 22 C 1.50909 * 107.38588 * 359.97438 * 17 16 15 23 23 C 1.51105 * 133.96194 * 179.97438 * 15 14 13 24 24 H 0.96999 * 119.99589 * 359.97438 * 1 2 3 25 25 H 0.97006 * 120.00257 * 0.02562 * 9 7 2 26 26 H 1.08003 * 119.05239 * 359.97438 * 13 12 10 27 27 H 1.08005 * 119.33214 * 180.02562 * 14 13 12 28 28 H 1.08010 * 119.80999 * 180.02562 * 18 17 16 29 29 H 1.08006 * 118.88927 * 179.97438 * 19 18 17 30 30 H 1.08003 * 120.60905 * 179.97438 * 20 19 18 31 31 H 1.09004 * 110.26906 * 241.04345 * 22 17 16 32 32 H 1.08997 * 110.27126 * 118.97334 * 22 17 16 33 33 H 1.09005 * 110.27359 * 61.00338 * 23 15 14 34 34 H 1.09005 * 110.27348 * 298.93677 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3464 -0.0006 5 1 1.8887 2.3964 -1.2125 6 1 1.8887 2.3965 1.2125 7 6 2.0089 -1.2045 0.0005 8 1 3.0889 -1.2044 0.0001 9 7 1.3249 -2.3892 0.0016 10 6 1.9988 -3.5564 0.0026 11 8 3.2153 -3.5564 0.0022 12 6 1.2622 -4.8320 0.0032 13 6 -0.1311 -4.8595 0.0022 14 6 -0.8421 -6.0543 0.0021 15 6 -0.2038 -7.2596 0.0040 16 6 1.1876 -7.2803 0.0052 17 6 1.7492 -8.5534 0.0065 18 6 3.1075 -8.6525 0.0071 19 6 3.8992 -7.5027 0.0073 20 6 3.3599 -6.2464 0.0063 21 6 1.9675 -6.1113 0.0035 22 6 0.6136 -9.5473 0.0069 23 6 -0.6740 -8.6956 0.0051 24 1 -0.4849 0.8401 0.0004 25 1 0.3549 -2.3892 0.0016 26 1 -0.6741 -3.9260 0.0013 27 1 -1.9218 -6.0274 0.0009 28 1 3.5748 -9.6263 0.0077 29 1 4.9740 -7.6093 0.0082 30 1 3.9972 -5.3744 0.0069 31 1 0.6552 -10.1677 0.9022 32 1 0.6560 -10.1695 -0.8870 33 1 -1.2618 -8.9012 -0.8897 34 1 -1.2627 -8.8996 0.8995 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336469951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:39 Heat of formation + Delta-G solvation = 6.581966 kcal Electronic energy + Delta-G solvation = -19129.843290 eV Core-core repulsion = 16184.900851 eV Total energy + Delta-G solvation = -2944.942439 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80665 -38.23022 -36.00800 -35.11122 -34.09226 -31.53039 -29.95183 -29.39198 -28.72583 -25.52646 -24.24469 -22.49789 -21.62965 -21.10673 -19.29289 -18.10535 -17.09093 -16.28415 -15.54237 -15.29183 -15.09811 -14.73794 -14.23336 -13.97363 -13.61387 -13.45941 -12.91715 -12.59865 -12.43713 -12.14228 -12.01991 -11.69937 -11.59197 -11.35193 -11.23108 -10.91514 -10.54895 -10.52865 -10.42344 -10.31610 -9.72650 -9.17861 -8.36812 -8.28756 -8.17286 -7.31290 -6.65530 -3.94113 0.69993 1.42462 2.18341 3.06546 3.17709 3.23388 3.25064 4.01722 4.02259 4.39133 4.55573 4.66686 4.85283 5.11687 5.18679 5.18720 5.25338 5.31342 5.40935 5.58998 5.63880 5.79415 5.82239 5.87022 5.96866 6.00935 6.19852 6.36044 6.50323 6.62346 6.68368 6.77520 6.90897 7.01938 7.26006 7.34614 7.39183 7.89796 8.43287 8.98397 9.33937 9.92385 10.50931 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.032772 B = 0.004906 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.174416 B = 5705.699173 C = 6539.316629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.023 3.977 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.289 4.289 8 H 0.111 0.889 9 N -0.537 5.537 10 C 0.465 3.535 11 O -0.596 6.596 12 C -0.078 4.078 13 C -0.110 4.110 14 C -0.098 4.098 15 C -0.095 4.095 16 C -0.078 4.078 17 C -0.099 4.099 18 C -0.104 4.104 19 C -0.134 4.134 20 C -0.086 4.086 21 C -0.017 4.017 22 C -0.072 4.072 23 C -0.073 4.073 24 H 0.277 0.723 25 H 0.394 0.606 26 H 0.128 0.872 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.161 0.839 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 -14.865 0.015 15.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.419 4.419 8 H 0.129 0.871 9 N -0.170 5.170 10 C 0.255 3.745 11 O -0.484 6.484 12 C -0.082 4.082 13 C -0.130 4.130 14 C -0.116 4.116 15 C -0.096 4.096 16 C -0.078 4.078 17 C -0.100 4.100 18 C -0.122 4.122 19 C -0.152 4.152 20 C -0.103 4.103 21 C -0.018 4.018 22 C -0.108 4.108 23 C -0.110 4.110 24 H 0.087 0.913 25 H 0.229 0.771 26 H 0.146 0.854 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.179 0.821 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.808 -14.616 0.014 14.727 hybrid contribution -0.313 0.948 -0.001 0.998 sum -2.121 -13.668 0.013 13.832 Atomic orbital electron populations 1.69591 1.06248 1.28901 1.47529 1.25448 0.95719 1.00283 0.96678 0.85690 0.79835 0.80296 0.77971 1.18856 1.20422 1.20415 1.19961 0.93941 0.82072 1.45888 0.87110 1.41945 1.09610 1.04801 1.60620 1.17452 0.87438 0.82923 0.86704 1.90485 1.13131 1.86519 1.58277 1.21407 0.92957 0.93293 1.00515 1.21353 0.93229 0.98034 1.00405 1.20015 0.99550 0.90663 1.01336 1.19917 0.93482 0.94867 1.01380 1.18184 0.94378 0.93666 1.01586 1.19841 0.94047 0.94339 1.01723 1.20200 0.92068 0.98309 1.01673 1.20949 0.99642 0.92147 1.02503 1.21840 0.94585 0.98628 0.95281 1.18508 0.93442 0.90890 0.98990 1.20842 0.91114 0.96440 1.02449 1.20902 0.97312 0.90174 1.02576 0.91288 0.77054 0.85450 0.86201 0.86628 0.86346 0.82147 0.90177 0.90182 0.90068 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.17 13.05 55.50 0.72 -22.44 16 2 C 0.02 0.59 5.50 -17.45 -0.10 0.49 16 3 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.29 -7.91 9.68 -15.02 -0.15 -8.05 16 8 H 0.11 3.15 7.15 -52.49 -0.38 2.77 16 9 N -0.54 -13.83 5.23 -12.00 -0.06 -13.90 16 10 C 0.47 11.72 7.72 -12.58 -0.10 11.62 16 11 O -0.60 -16.38 13.52 5.23 0.07 -16.31 16 12 C -0.08 -1.68 6.07 -102.65 -0.62 -2.30 16 13 C -0.11 -2.02 9.52 -38.87 -0.37 -2.39 16 14 C -0.10 -1.52 9.92 -39.95 -0.40 -1.92 16 15 C -0.10 -1.46 6.36 -104.75 -0.67 -2.13 16 16 C -0.08 -1.36 5.62 -108.35 -0.61 -1.97 16 17 C -0.10 -1.47 6.38 -104.92 -0.67 -2.13 16 18 C -0.10 -1.48 9.99 -39.81 -0.40 -1.88 16 19 C -0.13 -2.12 9.91 -39.62 -0.39 -2.51 16 20 C -0.09 -1.67 9.41 -39.51 -0.37 -2.04 16 21 C -0.02 -0.35 5.89 -105.27 -0.62 -0.97 16 22 C -0.07 -0.78 6.90 -27.05 -0.19 -0.96 16 23 C -0.07 -0.81 6.90 -26.96 -0.19 -0.99 16 24 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 25 H 0.39 9.64 5.98 -40.82 -0.24 9.39 16 26 H 0.13 2.25 6.42 -52.48 -0.34 1.92 16 27 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 28 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 29 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 30 H 0.16 3.45 5.55 -52.48 -0.29 3.16 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 288.59 15.07 4.35 4.35 Total: -1.00 -30.43 288.59 -9.11 -39.54 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -3.34 Total: 11.69 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -5.83 Total: -18.14 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.66 Total: -36.34 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.07 Total: -16.31 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.43 -9.11 -39.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336469951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.127 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds