Wall clock time and date at job start Mon Mar 30 2020 01:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86800 * 119.99862 * 2 1 4 4 H 1.48497 * 109.46749 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47118 * 299.99828 * 3 2 1 6 6 H 1.48495 * 109.47131 * 60.00116 * 3 2 1 7 7 C 1.40049 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99493 * 179.97438 * 7 2 1 9 9 C 1.46367 * 120.00182 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00214 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99915 * 179.97438 * 9 7 2 12 12 C 1.46496 * 119.99838 * 180.02562 * 11 9 7 13 13 H 1.08991 * 109.47562 * 36.91994 * 12 11 9 14 14 C 1.53000 * 109.47056 * 156.92312 * 12 11 9 15 15 C 1.53009 * 109.46873 * 294.99733 * 14 12 11 16 16 O 1.42902 * 109.47078 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47171 * 276.91562 * 12 11 9 18 18 C 1.38221 * 120.01368 * 332.20548 * 17 12 11 19 19 C 1.38226 * 120.02340 * 179.97438 * 18 17 12 20 20 C 1.38264 * 120.05367 * 0.02562 * 19 18 17 21 21 C 1.38173 * 120.02549 * 0.02562 * 20 19 18 22 22 C 1.38442 * 120.01285 * 151.92319 * 17 12 11 23 23 F 1.35097 * 120.02618 * 0.02562 * 22 17 12 24 24 H 0.96995 * 119.99986 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99671 * 0.02562 * 11 9 7 26 26 H 1.08999 * 109.47680 * 175.00027 * 14 12 11 27 27 H 1.09000 * 109.47606 * 54.99496 * 14 12 11 28 28 H 1.09000 * 109.46811 * 300.00250 * 15 14 12 29 29 H 1.08999 * 109.46727 * 59.99710 * 15 14 12 30 30 H 0.96700 * 113.99959 * 179.97438 * 16 15 14 31 31 H 1.07994 * 119.98638 * 359.95324 * 18 17 12 32 32 H 1.08003 * 119.97292 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.98950 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.01335 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.2164 -4.9164 -0.0022 13 1 0.3230 -4.8199 -0.6190 14 6 2.1104 -6.0213 -0.5687 15 6 2.4134 -5.7281 -2.0395 16 8 3.2479 -6.7604 -2.5688 17 6 0.8176 -5.2668 1.4082 18 6 1.5770 -4.8192 2.4729 19 6 1.2111 -5.1401 3.7667 20 6 0.0856 -5.9094 3.9974 21 6 -0.6744 -6.3589 2.9346 22 6 -0.3127 -6.0323 1.6383 23 9 -1.0586 -6.4660 0.5988 24 1 -0.4850 0.8400 -0.0004 25 1 2.9189 -3.6477 -0.0020 26 1 1.5988 -6.9803 -0.4873 27 1 3.0432 -6.0582 -0.0060 28 1 1.4806 -5.6912 -2.6022 29 1 2.9250 -4.7691 -2.1209 30 1 3.4804 -6.6396 -3.4997 31 1 2.4566 -4.2189 2.2938 32 1 1.8048 -4.7895 4.5980 33 1 -0.1991 -6.1598 5.0086 34 1 -1.5533 -6.9602 3.1150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592879548.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:16 Heat of formation + Delta-G solvation = -116.740166 kcal Electronic energy + Delta-G solvation = -20336.758732 eV Core-core repulsion = 16955.699419 eV Total energy + Delta-G solvation = -3381.059313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.49991 -39.15341 -37.44616 -36.63907 -34.47974 -32.45983 -30.62338 -30.38448 -29.84663 -26.48946 -24.86340 -22.44834 -21.90783 -20.85714 -19.45110 -17.52426 -17.42968 -16.83809 -16.12188 -15.65359 -15.38544 -15.18731 -14.98782 -14.23240 -14.06419 -13.83241 -13.67789 -13.10468 -12.70595 -12.50251 -12.22757 -12.00411 -11.78595 -11.42770 -11.28176 -11.12220 -11.02986 -10.76498 -10.51124 -10.50191 -10.21600 -9.79498 -8.90907 -8.60441 -8.28455 -7.69478 -7.62671 -6.22419 -4.68792 1.51202 1.57288 3.09976 3.18497 3.22437 3.90177 4.06198 4.30687 4.54492 4.61512 4.73384 5.05653 5.13303 5.27750 5.29342 5.43807 5.54776 5.60676 5.71243 5.81467 5.90780 6.00772 6.18787 6.24048 6.34067 6.43683 6.49460 6.69172 6.83086 7.24181 7.39503 7.71324 7.83656 7.99669 8.27006 8.98645 9.45903 10.55752 10.74159 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.006878 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.998836 B = 4070.116209 C = 5143.612921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.573 6.573 11 N -0.759 5.759 12 C 0.195 3.805 13 H 0.090 0.910 14 C -0.116 4.116 15 C 0.077 3.923 16 O -0.580 6.580 17 C -0.106 4.106 18 C -0.068 4.068 19 C -0.134 4.134 20 C -0.103 4.103 21 C -0.161 4.161 22 C 0.103 3.897 23 F -0.140 7.140 24 H 0.268 0.732 25 H 0.381 0.619 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.377 0.623 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.647 -10.480 2.644 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.455 6.455 11 N -0.414 5.414 12 C 0.088 3.912 13 H 0.108 0.892 14 C -0.154 4.154 15 C 0.000 4.000 16 O -0.385 6.385 17 C -0.109 4.109 18 C -0.086 4.086 19 C -0.153 4.153 20 C -0.121 4.121 21 C -0.179 4.179 22 C 0.083 3.917 23 F -0.119 7.119 24 H 0.079 0.921 25 H 0.213 0.787 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.223 0.777 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.468 -10.593 3.198 11.596 hybrid contribution 0.663 1.082 -0.646 1.423 sum 4.130 -9.511 2.552 10.679 Atomic orbital electron populations 1.70032 1.07028 1.27184 1.35168 1.25704 0.94601 1.00276 0.92657 0.86339 0.80481 0.81851 0.78234 1.18779 1.20185 1.20177 1.20889 0.93563 0.89273 1.54433 0.91388 1.18251 0.87276 0.82288 0.76292 1.90626 1.14036 1.86545 1.54287 1.46318 1.08418 1.04207 1.82462 1.19229 0.96275 0.85010 0.90666 0.89242 1.21695 1.00369 0.98704 0.94595 1.22181 0.93492 0.90060 0.94304 1.86422 1.71446 1.50086 1.30556 1.20518 0.94473 0.97542 0.98342 1.20919 0.99541 0.96933 0.91233 1.21158 0.97713 0.99388 0.96997 1.20876 0.95075 0.97947 0.98214 1.21011 1.01910 1.03866 0.91162 1.17546 0.91286 0.98816 0.84067 1.91458 1.75491 1.87773 1.57179 0.92144 0.78655 0.90746 0.90902 0.93552 0.92554 0.77695 0.84922 0.85811 0.85676 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.69 11.83 55.55 0.66 -22.03 16 2 C 0.09 2.40 5.50 -17.36 -0.10 2.30 16 3 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -14.86 9.54 -35.63 -0.34 -15.20 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.55 15.13 7.68 -12.99 -0.10 15.03 16 10 O -0.57 -18.18 14.72 5.20 0.08 -18.11 16 11 N -0.76 -15.99 3.36 -56.35 -0.19 -16.18 16 12 C 0.20 3.76 1.96 -69.09 -0.14 3.62 16 13 H 0.09 2.00 7.19 -51.93 -0.37 1.62 16 14 C -0.12 -1.81 5.09 -26.73 -0.14 -1.94 16 15 C 0.08 1.13 6.93 37.16 0.26 1.39 16 16 O -0.58 -7.78 13.66 -35.23 -0.48 -8.26 16 17 C -0.11 -2.00 4.98 -104.55 -0.52 -2.52 16 18 C -0.07 -1.18 9.32 -39.59 -0.37 -1.55 16 19 C -0.13 -2.00 10.04 -39.58 -0.40 -2.39 16 20 C -0.10 -1.43 10.04 -39.60 -0.40 -1.83 16 21 C -0.16 -2.46 10.03 -39.52 -0.40 -2.86 16 22 C 0.10 1.86 7.24 -39.42 -0.29 1.58 16 23 F -0.14 -2.62 16.51 2.25 0.04 -2.58 16 24 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16 25 H 0.38 7.01 8.56 -40.82 -0.35 6.66 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 30 H 0.38 3.28 9.12 45.56 0.42 3.70 16 31 H 0.13 2.25 7.34 -52.49 -0.39 1.87 16 32 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -34.70 304.02 -6.44 -41.14 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -3.18 Total: 11.04 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.92 Total: -4.37 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.47 Total: -38.22 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.40 Total: -26.37 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.70 -6.44 -41.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592879548.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.601 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds