Wall clock time and date at job start Mon Mar 30 2020 01:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86800 * 119.99862 * 2 1 4 4 H 1.48497 * 109.46749 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47118 * 299.99828 * 3 2 1 6 6 H 1.48495 * 109.47131 * 60.00116 * 3 2 1 7 7 C 1.40049 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99493 * 179.97438 * 7 2 1 9 9 C 1.46367 * 120.00182 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00214 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99915 * 179.97438 * 9 7 2 12 12 C 1.46496 * 119.99838 * 180.02562 * 11 9 7 13 13 H 1.08991 * 109.47562 * 36.91994 * 12 11 9 14 14 C 1.53000 * 109.47056 * 156.92312 * 12 11 9 15 15 C 1.53009 * 109.46873 * 294.99733 * 14 12 11 16 16 O 1.42902 * 109.47078 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47171 * 276.91562 * 12 11 9 18 18 C 1.38221 * 120.01368 * 332.20548 * 17 12 11 19 19 C 1.38226 * 120.02340 * 179.97438 * 18 17 12 20 20 C 1.38264 * 120.05367 * 0.02562 * 19 18 17 21 21 C 1.38173 * 120.02549 * 0.02562 * 20 19 18 22 22 C 1.38442 * 120.01285 * 151.92319 * 17 12 11 23 23 F 1.35097 * 120.02618 * 0.02562 * 22 17 12 24 24 H 0.96995 * 119.99986 * 0.02562 * 1 2 3 25 25 H 0.96997 * 119.99671 * 0.02562 * 11 9 7 26 26 H 1.08999 * 109.47680 * 175.00027 * 14 12 11 27 27 H 1.09000 * 109.47606 * 54.99496 * 14 12 11 28 28 H 1.09000 * 109.46811 * 300.00250 * 15 14 12 29 29 H 1.08999 * 109.46727 * 59.99710 * 15 14 12 30 30 H 0.96700 * 113.99959 * 179.97438 * 16 15 14 31 31 H 1.07994 * 119.98638 * 359.95324 * 18 17 12 32 32 H 1.08003 * 119.97292 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.98950 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.01335 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.2164 -4.9164 -0.0022 13 1 0.3230 -4.8199 -0.6190 14 6 2.1104 -6.0213 -0.5687 15 6 2.4134 -5.7281 -2.0395 16 8 3.2479 -6.7604 -2.5688 17 6 0.8176 -5.2668 1.4082 18 6 1.5770 -4.8192 2.4729 19 6 1.2111 -5.1401 3.7667 20 6 0.0856 -5.9094 3.9974 21 6 -0.6744 -6.3589 2.9346 22 6 -0.3127 -6.0323 1.6383 23 9 -1.0586 -6.4660 0.5988 24 1 -0.4850 0.8400 -0.0004 25 1 2.9189 -3.6477 -0.0020 26 1 1.5988 -6.9803 -0.4873 27 1 3.0432 -6.0582 -0.0060 28 1 1.4806 -5.6912 -2.6022 29 1 2.9250 -4.7691 -2.1209 30 1 3.4804 -6.6396 -3.4997 31 1 2.4566 -4.2189 2.2938 32 1 1.8048 -4.7895 4.5980 33 1 -0.1991 -6.1598 5.0086 34 1 -1.5533 -6.9602 3.1150 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592879548.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:15 Heat of formation + Delta-G solvation = -142.537720 kcal Electronic energy + Delta-G solvation = -20337.877398 eV Core-core repulsion = 16955.699419 eV Total energy + Delta-G solvation = -3382.177979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.89932 -40.60545 -39.05757 -38.00608 -36.10078 -34.55309 -32.35217 -31.62541 -31.11199 -28.45467 -26.33298 -23.75347 -23.16592 -22.52003 -21.18287 -19.31771 -18.69940 -18.17868 -17.65546 -17.27704 -16.99384 -16.56503 -16.36148 -15.85123 -15.50380 -15.36987 -14.94638 -14.59499 -14.34679 -14.06902 -13.74967 -13.63397 -13.23061 -12.85498 -12.82045 -12.66426 -12.57922 -12.49526 -12.09258 -11.98696 -11.82442 -10.96203 -10.94170 -9.94076 -9.80734 -9.59793 -9.51174 -8.27917 -6.84282 0.23316 0.32124 1.40142 1.40819 1.58133 2.24006 2.48579 2.65394 2.99184 3.17291 3.38300 3.59105 3.87642 3.91978 3.98547 4.13735 4.16137 4.29976 4.41885 4.45434 4.58175 4.68221 4.92665 4.99828 5.05055 5.14114 5.22795 5.33527 5.43442 5.52485 5.88497 6.00523 6.19222 6.26927 6.83248 6.88618 7.55163 8.51710 8.69503 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.006878 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.998836 B = 4070.116209 C = 5143.612921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.245 1.245 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.545 3.455 10 O -0.627 6.627 11 N -0.741 5.741 12 C 0.201 3.799 13 H 0.048 0.952 14 C -0.104 4.104 15 C 0.084 3.916 16 O -0.585 6.585 17 C -0.133 4.133 18 C -0.089 4.089 19 C -0.131 4.131 20 C -0.093 4.093 21 C -0.159 4.159 22 C 0.069 3.931 23 F -0.153 7.153 24 H 0.273 0.727 25 H 0.396 0.604 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.398 0.602 31 H 0.130 0.870 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.496 -10.498 4.165 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.168 1.168 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.605 4.605 8 H 0.107 0.893 9 C 0.350 3.650 10 O -0.514 6.514 11 N -0.395 5.395 12 C 0.094 3.906 13 H 0.066 0.934 14 C -0.142 4.142 15 C 0.006 3.994 16 O -0.393 6.393 17 C -0.136 4.136 18 C -0.107 4.107 19 C -0.149 4.149 20 C -0.111 4.111 21 C -0.178 4.178 22 C 0.050 3.950 23 F -0.132 7.132 24 H 0.082 0.918 25 H 0.231 0.769 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.248 0.752 31 H 0.148 0.852 32 H 0.174 0.826 33 H 0.187 0.813 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.377 -10.666 4.700 12.836 hybrid contribution 0.085 0.978 -1.090 1.467 sum 5.462 -9.688 3.610 11.693 Atomic orbital electron populations 1.70210 1.09518 1.28712 1.36677 1.26937 0.95436 1.04875 0.91315 0.85012 0.79511 0.75676 0.78356 1.16786 1.19643 1.19565 1.21423 0.94724 0.89847 1.54536 0.89278 1.18542 0.86741 0.84028 0.75724 1.90584 1.16374 1.87705 1.56709 1.45854 1.08979 1.03690 1.80972 1.19165 0.95172 0.84950 0.91290 0.93393 1.21567 1.00123 0.97216 0.95271 1.21993 0.93419 0.90268 0.93735 1.86369 1.70957 1.49428 1.32565 1.20541 0.95765 0.99151 0.98130 1.21061 0.99786 0.97632 0.92238 1.21580 0.98118 0.98472 0.96687 1.21397 0.93795 0.96144 0.99757 1.21413 1.02744 1.03457 0.90141 1.17946 0.91678 1.00266 0.85130 1.91416 1.75766 1.88029 1.57973 0.91756 0.76905 0.90475 0.89456 0.94319 0.92899 0.75201 0.85234 0.82624 0.81341 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.11 11.83 21.84 0.26 -49.85 16 2 C 0.03 1.61 5.50 85.30 0.47 2.08 16 3 Si 0.99 40.34 29.56 68.60 2.03 42.37 16 4 H -0.25 -9.08 7.11 99.48 0.71 -8.38 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.57 -31.28 9.54 24.83 0.24 -31.05 16 8 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 9 C 0.55 30.74 7.68 86.36 0.66 31.40 16 10 O -0.63 -41.85 14.72 -4.31 -0.06 -41.91 16 11 N -0.74 -32.05 3.36 -450.42 -1.51 -33.57 16 12 C 0.20 8.06 1.96 44.25 0.09 8.14 16 13 H 0.05 2.31 7.19 -2.39 -0.02 2.30 16 14 C -0.10 -3.27 5.09 30.60 0.16 -3.12 16 15 C 0.08 2.46 6.93 71.99 0.50 2.96 16 16 O -0.58 -14.93 13.66 -148.98 -2.04 -16.97 16 17 C -0.13 -5.14 4.98 -19.82 -0.10 -5.24 16 18 C -0.09 -3.05 9.32 22.26 0.21 -2.84 16 19 C -0.13 -3.57 10.04 22.27 0.22 -3.34 16 20 C -0.09 -2.29 10.04 22.26 0.22 -2.07 16 21 C -0.16 -4.62 10.03 22.31 0.22 -4.39 16 22 C 0.07 2.56 7.24 22.38 0.16 2.73 16 23 F -0.15 -5.99 16.51 44.97 0.74 -5.24 16 24 H 0.27 15.10 8.29 -92.71 -0.77 14.33 16 25 H 0.40 14.62 8.56 -92.71 -0.79 13.82 16 26 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.58 7.75 -2.39 -0.02 1.56 16 30 H 0.40 6.30 9.12 -74.06 -0.68 5.62 16 31 H 0.13 4.38 7.34 -2.91 -0.02 4.36 16 32 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -78.63 304.02 2.14 -76.48 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.33 Total: 33.43 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 3.05 Total: -4.74 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.26 Total: -83.42 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -2.10 Total: -58.88 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.74 Total: -5.24 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -78.63 2.14 -76.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592879548.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.054 kcal (2) G-P(sol) polarization free energy of solvation -78.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds