Wall clock time and date at job start Mon Mar 30 2020 00:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00416 * 2 1 4 4 H 1.48496 * 109.47373 * 270.00003 * 3 2 1 5 5 H 1.48504 * 109.47062 * 30.00489 * 3 2 1 6 6 H 1.48504 * 109.47329 * 150.00089 * 3 2 1 7 7 C 1.37879 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46853 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46996 * 180.02562 * 11 10 9 13 13 C 1.39188 * 120.00228 * 179.97438 * 12 11 10 14 14 C 1.39644 * 120.83263 * 359.71566 * 13 12 11 15 15 C 1.37751 * 119.19390 * 180.25274 * 14 13 12 16 16 N 1.32084 * 120.91114 * 0.02701 * 15 14 13 17 17 C 1.32366 * 121.83154 * 359.97438 * 16 15 14 18 18 O 1.35682 * 119.64843 * 180.02562 * 17 16 15 19 19 C 1.38605 * 120.71181 * 359.97438 * 17 16 15 20 20 N 1.48023 * 120.49287 * 180.02562 * 19 17 16 21 21 O 1.21801 * 119.99629 * 269.97587 * 20 19 17 22 22 O 1.21801 * 120.00530 * 89.97647 * 20 19 17 23 23 H 0.96999 * 119.99113 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47417 * 59.99717 * 9 7 2 25 25 H 1.09001 * 109.47320 * 300.00143 * 9 7 2 26 26 H 1.09001 * 109.47082 * 60.00156 * 10 9 7 27 27 H 1.08993 * 109.46873 * 299.99901 * 10 9 7 28 28 H 1.08992 * 109.47449 * 59.99831 * 11 10 9 29 29 H 1.09005 * 109.47445 * 299.99433 * 11 10 9 30 30 H 0.97000 * 119.99933 * 359.97438 * 12 11 10 31 31 H 1.07999 * 120.40461 * 0.25298 * 14 13 12 32 32 H 1.07998 * 119.54152 * 180.02562 * 15 14 13 33 33 H 0.96698 * 114.00406 * 269.97945 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5469 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0027 11 6 1.4800 -4.9871 -0.0046 12 7 2.4319 -6.1007 -0.0049 13 6 1.9679 -7.4130 -0.0060 14 6 0.5988 -7.6880 -0.0008 15 6 0.1769 -8.9993 0.0033 16 7 1.0479 -9.9923 0.0028 17 6 2.3537 -9.7756 -0.0020 18 8 3.2089 -10.8290 -0.0028 19 6 2.8569 -8.4842 -0.0074 20 7 4.3181 -8.2474 -0.0134 21 8 4.9229 -8.1467 1.0390 22 8 4.9155 -8.1533 -1.0706 23 1 -0.4849 0.8401 0.0004 24 1 0.6245 -2.5563 -0.8920 25 1 0.6239 -2.5575 0.8880 26 1 2.8718 -3.6053 0.8873 27 1 2.8717 -3.6036 -0.8926 28 1 0.8536 -5.0438 -0.8947 29 1 0.8530 -5.0459 0.8852 30 1 3.3856 -5.9235 -0.0045 31 1 -0.1205 -6.8825 0.0001 32 1 -0.8806 -9.2185 0.0069 33 1 3.4600 -11.1324 0.8803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596107834.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:11 Heat of formation + Delta-G solvation = -16.469456 kcal Electronic energy + Delta-G solvation = -19517.184112 eV Core-core repulsion = 16160.392825 eV Total energy + Delta-G solvation = -3356.791287 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.41587 -40.74141 -38.30007 -36.78026 -36.57435 -34.20947 -32.52455 -31.34071 -30.33058 -27.09193 -26.56231 -24.08417 -23.21360 -22.43301 -20.80513 -19.57844 -19.21828 -18.86855 -18.43214 -17.12817 -16.64503 -16.29337 -15.73335 -15.27470 -15.22113 -14.80211 -14.47370 -13.90389 -13.21477 -12.59322 -12.48669 -12.40565 -12.02522 -11.77498 -11.42388 -11.31074 -11.22083 -10.99094 -10.94447 -10.68894 -10.14502 -10.06752 -9.78499 -9.67698 -9.30662 -8.51149 -8.47869 -6.15670 -4.19112 0.19456 0.39295 0.77082 1.22167 2.58860 2.92612 3.16937 3.23640 3.30466 3.33721 4.01610 4.23774 4.33954 4.45500 4.65895 5.06361 5.10457 5.20744 5.29838 5.32758 5.67863 5.74686 6.05980 6.24457 6.24876 6.62827 6.68577 6.79521 6.98551 7.31869 7.42757 7.46871 7.52556 7.81413 8.21771 8.86700 9.46402 10.95555 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031522 B = 0.003639 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.050742 B = 7693.399452 C = 8434.841410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.124 4.124 11 C 0.110 3.890 12 N -0.711 5.711 13 C 0.316 3.684 14 C -0.248 4.248 15 C 0.189 3.811 16 N -0.529 5.529 17 C 0.410 3.590 18 O -0.476 6.476 19 C -0.192 4.192 20 N 0.033 4.967 21 O -0.146 6.146 22 O -0.133 6.133 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.405 0.595 31 H 0.161 0.839 32 H 0.179 0.821 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.741 -18.108 1.703 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.162 4.162 11 C -0.012 4.012 12 N -0.333 5.333 13 C 0.195 3.805 14 C -0.274 4.274 15 C 0.037 3.963 16 N -0.253 5.253 17 C 0.227 3.773 18 O -0.285 6.285 19 C -0.284 4.284 20 N 0.562 4.438 21 O -0.367 6.367 22 O -0.357 6.357 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.241 0.759 31 H 0.179 0.821 32 H 0.196 0.804 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.619 -18.700 1.140 18.745 hybrid contribution 1.545 1.831 0.422 2.433 sum 0.927 -16.869 1.562 16.967 Atomic orbital electron populations 1.69948 1.06089 1.26911 1.50320 1.25011 0.94889 0.99416 0.94974 0.86549 0.79851 0.83143 0.78240 1.20538 1.21095 1.19790 1.21163 0.93096 0.90783 1.51407 0.92552 1.19020 0.93635 0.90733 0.97667 1.21939 1.00069 0.92609 1.01582 1.22055 0.91915 0.85109 1.02126 1.45473 1.10770 1.02190 1.74819 1.17629 0.92076 0.84021 0.86745 1.21801 0.92641 0.99914 1.13044 1.22606 0.99498 0.86693 0.87528 1.67629 1.00247 1.36386 1.21015 1.18329 0.87077 0.82588 0.89281 1.84785 1.61201 1.47831 1.34690 1.21574 0.80307 0.95774 1.30777 1.43171 1.02693 0.97665 1.00280 1.94559 1.68474 1.52488 1.21144 1.94583 1.68949 1.51755 1.20459 0.92802 0.96177 0.96159 0.92288 0.92292 0.90852 0.90850 0.75914 0.82132 0.80422 0.72725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.11 1.54 4.95 -4.04 -0.02 1.52 16 12 N -0.71 -9.44 5.71 -58.49 -0.33 -9.77 16 13 C 0.32 3.94 6.69 -83.64 -0.56 3.38 16 14 C -0.25 -2.45 9.38 -39.23 -0.37 -2.82 16 15 C 0.19 1.67 11.17 -17.62 -0.20 1.48 16 16 N -0.53 -5.97 10.38 -13.43 -0.14 -6.10 16 17 C 0.41 4.98 7.74 -17.19 -0.13 4.84 16 18 O -0.48 -5.16 13.32 -18.75 -0.25 -5.41 16 19 C -0.19 -2.54 6.22 -79.45 -0.49 -3.03 16 20 N 0.03 0.47 3.35 34.20 0.11 0.59 16 21 O -0.15 -2.16 19.25 -29.46 -0.57 -2.73 16 22 O -0.13 -2.11 19.26 -29.46 -0.57 -2.68 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 29 H 0.07 0.97 7.99 -51.93 -0.41 0.55 16 30 H 0.41 5.61 7.83 -40.82 -0.32 5.29 16 31 H 0.16 1.32 6.89 -52.49 -0.36 0.95 16 32 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.41 2.41 9.06 45.56 0.41 2.82 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -31.51 302.82 -6.68 -38.19 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.75 Total: 1.76 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.46 Total: -9.43 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.38 Total: -40.18 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.38 Total: -10.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.51 -6.68 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596107834.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.718 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds