Wall clock time and date at job start Mon Mar 30 2020 01:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47051 * 2 1 4 4 C 1.50698 * 109.47410 * 119.99611 * 2 1 3 5 5 O 1.21298 * 119.99690 * 106.43048 * 4 2 1 6 6 N 1.34777 * 120.00428 * 286.43200 * 4 2 1 7 7 C 1.37102 * 119.99455 * 3.84424 * 6 4 2 8 8 H 1.07993 * 120.00535 * 24.05888 * 7 6 4 9 9 C 1.38952 * 119.99612 * 204.05378 * 7 6 4 10 10 N 1.31415 * 120.00271 * 11.24254 * 9 7 6 11 11 Si 1.86798 * 119.99783 * 191.24035 * 9 7 6 12 12 H 1.48495 * 109.47167 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46970 * 120.00223 * 11 9 7 14 14 H 1.48503 * 109.47129 * 240.00160 * 11 9 7 15 15 C 1.46500 * 119.99965 * 183.84782 * 6 4 2 16 16 C 1.50695 * 109.47428 * 82.65421 * 15 6 4 17 17 O 1.20833 * 119.99754 * 359.97438 * 16 15 6 18 18 O 1.34227 * 120.00271 * 179.97438 * 16 15 6 19 19 N 1.46495 * 109.47268 * 240.00063 * 2 1 3 20 20 C 1.34950 * 126.03734 * 325.00035 * 19 2 1 21 21 C 1.35318 * 107.75131 * 179.97438 * 20 19 2 22 22 C 1.39866 * 107.91566 * 359.97438 * 21 20 19 23 23 N 1.30837 * 108.20789 * 359.74169 * 22 21 20 24 24 H 1.09000 * 109.46928 * 174.12774 * 1 2 3 25 25 H 1.09000 * 109.47096 * 294.12136 * 1 2 3 26 26 H 1.08999 * 109.47272 * 54.12071 * 1 2 3 27 27 H 0.96993 * 120.00002 * 179.97438 * 10 9 7 28 28 H 1.09009 * 109.46501 * 202.65465 * 15 6 4 29 29 H 1.08994 * 109.47208 * 322.64679 * 15 6 4 30 30 H 0.96699 * 117.00376 * 180.02562 * 18 16 15 31 31 H 1.07999 * 126.12217 * 359.95264 * 20 19 2 32 32 H 1.07996 * 126.03877 * 179.97438 * 21 20 19 33 33 H 1.08003 * 125.89962 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.5147 -1.8193 1.1361 6 7 1.9458 -0.1135 2.4358 7 6 1.3297 1.1056 2.5543 8 1 0.5957 1.4130 1.8242 9 6 1.6498 1.9456 3.6139 10 7 2.6890 1.6793 4.3729 11 14 0.6028 3.4535 3.9594 12 1 -0.5003 3.5279 2.9681 13 1 0.0328 3.3575 5.3273 14 1 1.4433 4.6736 3.8579 15 6 2.5100 -0.7673 3.6191 16 6 3.9888 -0.4864 3.6912 17 8 4.5173 0.1902 2.8410 18 8 4.7188 -0.9878 4.6999 19 7 2.0183 -0.6906 -1.1961 20 6 1.4402 -1.7559 -1.7895 21 6 2.1961 -2.0923 -2.8602 22 6 3.2727 -1.2018 -2.9237 23 7 3.1640 -0.3574 -1.9302 24 1 -0.3633 -1.0223 -0.1051 25 1 -0.3633 0.4200 0.9379 26 1 -0.3634 0.6023 -0.8326 27 1 2.9126 2.2658 5.1123 28 1 2.0227 -0.3812 4.5145 29 1 2.3473 -1.8430 3.5522 30 1 5.6632 -0.7802 4.7038 31 1 0.5363 -2.2514 -1.4672 32 1 2.0023 -2.9049 -3.5447 33 1 4.0563 -1.2075 -3.6670 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736198934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:43 Heat of formation + Delta-G solvation = -26.406629 kcal Electronic energy + Delta-G solvation = -21088.118658 eV Core-core repulsion = 17730.896463 eV Total energy + Delta-G solvation = -3357.222195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75342 -39.38019 -38.20321 -35.29219 -34.60692 -33.87689 -31.72509 -29.66592 -29.23590 -27.65501 -25.26414 -23.83457 -21.46563 -20.53564 -20.12086 -19.18549 -17.75132 -16.96238 -16.54802 -16.08148 -15.61335 -14.68364 -14.48411 -14.42072 -14.25774 -13.75981 -13.51109 -13.08925 -12.91043 -12.41613 -12.15197 -12.13281 -11.83290 -11.51865 -11.51473 -11.07993 -11.03577 -10.57297 -10.44872 -10.27012 -10.15674 -9.69752 -9.20440 -9.15121 -8.70111 -8.07480 -8.00640 -6.63766 -4.24435 2.40970 2.92635 3.00596 3.09170 3.12499 3.33261 3.47628 3.66554 3.90463 4.19546 4.56722 4.86065 5.09453 5.24750 5.43246 5.47865 5.60297 5.97369 6.04057 6.04407 6.17208 6.24150 6.37122 6.44824 6.52382 6.60086 7.12135 7.17091 7.42795 7.52523 7.61062 8.05405 8.24565 8.80949 9.10087 9.20434 9.55911 10.43273 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.007700 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.994804 B = 3635.347363 C = 4534.104196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.156 3.844 3 H 0.124 0.876 4 C 0.464 3.536 5 O -0.587 6.587 6 N -0.423 5.423 7 C -0.350 4.350 8 H 0.110 0.890 9 C 0.042 3.958 10 N -0.869 5.869 11 Si 0.931 3.069 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.160 3.840 16 C 0.498 3.502 17 O -0.508 6.508 18 O -0.536 6.536 19 N -0.338 5.338 20 C 0.073 3.927 21 C -0.290 4.290 22 C 0.033 3.967 23 N -0.291 5.291 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.275 0.725 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.391 0.609 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 -2.799 -3.939 6.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.142 0.858 4 C 0.251 3.749 5 O -0.471 6.471 6 N -0.142 5.142 7 C -0.476 4.476 8 H 0.127 0.873 9 C -0.164 4.164 10 N -0.506 5.506 11 Si 0.757 3.243 12 H -0.190 1.190 13 H -0.203 1.203 14 H -0.205 1.205 15 C 0.035 3.965 16 C 0.339 3.661 17 O -0.393 6.393 18 O -0.347 6.347 19 N -0.120 5.120 20 C -0.075 4.075 21 C -0.320 4.320 22 C -0.153 4.153 23 N -0.112 5.112 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.098 0.902 30 H 0.247 0.753 31 H 0.183 0.817 32 H 0.158 0.842 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.348 -2.058 -3.324 5.847 hybrid contribution 0.071 0.370 0.005 0.377 sum -4.277 -1.688 -3.319 5.670 Atomic orbital electron populations 1.22235 0.91738 1.03103 1.04935 1.20940 0.95269 0.97743 0.80957 0.85808 1.20171 0.82974 0.87414 0.84374 1.90593 1.49862 1.21008 1.85633 1.43225 1.48847 1.18523 1.03640 1.19878 1.20851 0.93375 1.13538 0.87277 1.25372 0.95422 0.98920 0.96679 1.69706 1.23594 1.38877 1.18464 0.85797 0.79372 0.80471 0.78663 1.19008 1.20323 1.20521 1.20370 0.87150 0.96862 0.92138 1.23600 0.90290 0.75081 0.77160 1.90585 1.72577 1.35745 1.40389 1.84506 1.25641 1.73043 1.51469 1.48407 1.18823 1.23676 1.21052 1.22331 0.99763 0.90968 0.94419 1.21319 0.99937 1.06773 1.03960 1.23737 0.99246 0.94746 0.97581 1.77382 1.02573 1.24385 1.06895 0.91805 0.87841 0.91450 0.91435 0.85688 0.90196 0.75297 0.81741 0.84189 0.80682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 8.61 37.16 0.32 -2.20 16 2 C 0.16 3.19 2.91 -69.09 -0.20 2.99 16 3 H 0.12 2.67 7.68 -51.93 -0.40 2.27 16 4 C 0.46 11.16 6.69 -10.99 -0.07 11.08 16 5 O -0.59 -15.67 16.00 5.54 0.09 -15.58 16 6 N -0.42 -10.21 2.19 -116.10 -0.25 -10.47 16 7 C -0.35 -8.15 8.39 -14.93 -0.13 -8.28 16 8 H 0.11 2.29 4.79 -52.49 -0.25 2.04 16 9 C 0.04 0.99 5.07 -17.47 -0.09 0.90 16 10 N -0.87 -21.71 8.96 55.50 0.50 -21.21 16 11 Si 0.93 18.24 29.57 -169.99 -5.03 13.21 16 12 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 13 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 15 C 0.16 3.75 5.14 -5.20 -0.03 3.72 16 16 C 0.50 12.21 6.43 36.00 0.23 12.44 16 17 O -0.51 -14.34 16.62 -18.76 -0.31 -14.66 16 18 O -0.54 -10.84 13.42 -39.25 -0.53 -11.37 16 19 N -0.34 -6.90 3.12 -56.00 -0.17 -7.07 16 20 C 0.07 1.26 10.38 -17.22 -0.18 1.08 16 21 C -0.29 -4.66 10.80 -40.01 -0.43 -5.09 16 22 C 0.03 0.57 12.02 -17.37 -0.21 0.36 16 23 N -0.29 -6.19 12.58 30.62 0.39 -5.81 16 24 H 0.06 0.91 6.86 -51.93 -0.36 0.55 16 25 H 0.10 1.62 5.61 -51.93 -0.29 1.33 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 28 H 0.13 2.87 6.51 -51.92 -0.34 2.53 16 29 H 0.08 1.76 7.60 -51.93 -0.39 1.37 16 30 H 0.39 6.23 9.10 45.56 0.41 6.64 16 31 H 0.17 2.35 7.12 -52.49 -0.37 1.97 16 32 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 33 H 0.18 2.34 8.06 -52.48 -0.42 1.91 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -33.60 288.05 -4.16 -37.76 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -2.39 Total: 13.83 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -0.78 Total: 17.02 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.45 Total: -44.55 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.75 Total: -41.61 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.60 -4.16 -37.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736198934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.353 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds