Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35726 * 116.99754 * 2 1 4 4 C 1.41860 * 126.78790 * 180.02562 * 3 2 1 5 5 C 1.36659 * 103.81154 * 179.97438 * 4 3 2 6 6 C 1.47539 * 126.87925 * 180.02562 * 5 4 3 7 7 O 1.21581 * 119.99938 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00239 * 180.27832 * 6 5 4 9 9 C 1.46497 * 119.99946 * 179.72221 * 8 6 5 10 10 C 1.53948 * 113.74367 * 253.73667 * 9 8 6 11 11 N 1.47808 * 86.03757 * 222.08681 * 10 9 8 12 12 C 1.36934 * 134.45655 * 204.64236 * 11 10 9 13 13 H 1.08003 * 120.00547 * 173.34554 * 12 11 10 14 14 C 1.38815 * 119.99993 * 353.35074 * 12 11 10 15 15 N 1.31618 * 120.00023 * 5.06110 * 14 12 11 16 16 Si 1.86797 * 119.99985 * 185.06296 * 14 12 11 17 17 H 1.48501 * 109.47476 * 94.98802 * 16 14 12 18 18 H 1.48508 * 109.47217 * 214.98676 * 16 14 12 19 19 H 1.48505 * 109.47355 * 334.98369 * 16 14 12 20 20 C 1.47580 * 91.05319 * 24.54679 * 11 10 9 21 21 O 1.34660 * 106.24609 * 0.26101 * 5 4 3 22 22 N 1.20881 * 111.62841 * 359.53052 * 21 5 4 23 23 H 1.08990 * 109.47507 * 59.99972 * 1 2 3 24 24 H 1.09003 * 109.46482 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47096 * 299.99100 * 1 2 3 26 26 H 1.08001 * 128.09009 * 359.95276 * 4 3 2 27 27 H 0.96995 * 120.00048 * 359.71791 * 8 6 5 28 28 H 1.09005 * 112.94848 * 25.33232 * 9 8 6 29 29 H 1.08993 * 113.76508 * 336.35358 * 10 9 8 30 30 H 1.09004 * 113.76510 * 107.74634 * 10 9 8 31 31 H 0.96997 * 119.99974 * 179.97438 * 15 14 12 32 32 H 1.08995 * 113.77590 * 221.14826 * 20 11 10 33 33 H 1.09005 * 113.76819 * 89.75571 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4431 1.4506 -0.0005 5 6 3.5389 2.8138 -0.0009 6 6 4.7783 3.6143 -0.0020 7 8 5.8602 3.0596 -0.0022 8 7 4.7111 4.9604 0.0035 9 6 5.9418 5.7552 0.0085 10 6 6.2464 6.4174 1.3645 11 7 6.6209 7.6131 0.5804 12 6 7.4400 8.6877 0.8025 13 1 7.6307 9.3947 0.0086 14 6 8.0254 8.8685 2.0481 15 7 7.8745 7.9563 2.9848 16 14 9.0274 10.4064 2.3949 17 1 8.1636 11.4235 3.0466 18 1 10.1587 10.0676 3.2953 19 1 9.5565 10.9508 1.1186 20 6 5.7599 7.1827 -0.5383 21 8 2.2757 3.2803 0.0053 22 7 1.4685 2.3805 0.0000 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 4.2442 0.7262 -0.0003 27 1 3.8480 5.4030 0.0040 28 1 6.7916 5.2254 -0.4219 29 1 5.3661 6.5608 1.9909 30 1 7.0804 5.9617 1.8983 31 1 8.2839 8.0824 3.8551 32 1 6.2060 7.3371 -1.5207 33 1 4.7363 7.5515 -0.4719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030239361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = 59.339990 kcal Electronic energy + Delta-G solvation = -19500.937138 eV Core-core repulsion = 16147.433196 eV Total energy + Delta-G solvation = -3353.503943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.13923 -39.68761 -39.13628 -37.65069 -33.87539 -33.34176 -32.20830 -31.53523 -27.99276 -27.57862 -24.91294 -24.64491 -23.50668 -22.59134 -20.88473 -19.86708 -18.78475 -18.12128 -17.07092 -16.84296 -16.12420 -16.09384 -15.82939 -15.09199 -15.03157 -14.50906 -14.10263 -13.91441 -13.71448 -12.77242 -12.56072 -12.20297 -12.03098 -11.64771 -11.56156 -11.52487 -10.91979 -10.86259 -10.56673 -10.26567 -10.01114 -9.98768 -9.59422 -9.58159 -8.84663 -8.65629 -6.96420 -5.83146 -3.16459 0.65074 1.89799 2.39225 2.52258 3.02946 3.36106 3.39036 3.44560 3.45336 3.88883 4.42169 4.55909 4.75685 4.80489 4.82428 5.00953 5.08014 5.13997 5.39280 5.48644 5.50554 5.90314 6.10912 6.30092 6.44697 6.57525 6.62934 7.17341 7.21375 7.44472 7.57256 7.87465 7.90916 8.13463 8.97984 9.64396 10.50080 11.34177 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.056755 B = 0.003284 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.233524 B = 8525.219684 C = 8560.134341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.281 6.281 3 C 0.203 3.797 4 C -0.160 4.160 5 C -0.048 4.048 6 C 0.600 3.400 7 O -0.510 6.510 8 N -0.694 5.694 9 C 0.088 3.912 10 C 0.157 3.843 11 N -0.606 5.606 12 C -0.228 4.228 13 H 0.083 0.917 14 C -0.004 4.004 15 N -0.916 5.916 16 Si 0.913 3.087 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.113 3.887 21 O 0.116 5.884 22 N -0.393 5.393 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.060 0.940 26 H 0.190 0.810 27 H 0.405 0.595 28 H 0.116 0.884 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.256 0.744 32 H 0.052 0.948 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 -13.066 -6.635 20.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.188 6.188 3 C 0.006 3.994 4 C -0.182 4.182 5 C -0.114 4.114 6 C 0.382 3.618 7 O -0.385 6.385 8 N -0.344 5.344 9 C -0.017 4.017 10 C 0.031 3.969 11 N -0.333 5.333 12 C -0.355 4.355 13 H 0.101 0.899 14 C -0.202 4.202 15 N -0.562 5.562 16 Si 0.743 3.257 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.205 1.205 20 C -0.013 4.013 21 O 0.051 5.949 22 N -0.117 5.117 23 H 0.079 0.921 24 H 0.125 0.875 25 H 0.079 0.921 26 H 0.207 0.793 27 H 0.240 0.760 28 H 0.134 0.866 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.852 -13.129 -6.445 20.144 hybrid contribution 0.299 0.634 0.382 0.799 sum -13.553 -12.495 -6.062 19.405 Atomic orbital electron populations 1.23094 0.76650 1.04212 1.02477 1.86218 1.22705 1.20454 1.89403 1.21903 0.90693 0.85800 1.01019 1.22182 0.94325 0.95071 1.06672 1.24330 0.87056 0.93961 1.06052 1.16531 0.84817 0.82449 0.78037 1.90893 1.26292 1.71199 1.50143 1.46117 1.11544 1.04824 1.71957 1.24184 0.85686 0.90059 1.01734 1.22680 0.98258 0.84863 0.91145 1.45690 1.48229 1.24246 1.15126 1.18982 1.19849 1.00372 0.96304 0.89909 1.24861 1.00929 0.98581 0.95806 1.69835 1.48046 1.33700 1.04619 0.86089 0.79244 0.82430 0.77921 1.21547 1.21619 1.20450 1.22879 0.94904 0.89822 0.93738 1.84951 1.11921 1.29604 1.68462 1.73987 1.15981 0.96686 1.25024 0.92149 0.87541 0.92098 0.79262 0.76026 0.86614 0.94858 0.90630 0.93447 0.92955 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.30 16 2 O -0.28 -3.02 10.57 -18.88 -0.20 -3.22 16 3 C 0.20 2.46 8.00 -16.71 -0.13 2.32 16 4 C -0.16 -1.92 10.97 -38.77 -0.43 -2.34 16 5 C -0.05 -0.61 7.29 -36.36 -0.26 -0.88 16 6 C 0.60 9.02 7.82 -12.47 -0.10 8.93 16 7 O -0.51 -9.30 16.53 5.29 0.09 -9.22 16 8 N -0.69 -10.13 5.37 -56.38 -0.30 -10.43 16 9 C 0.09 1.60 4.40 -70.14 -0.31 1.29 16 10 C 0.16 3.60 7.24 -2.84 -0.02 3.58 16 11 N -0.61 -15.07 3.70 -177.88 -0.66 -15.73 16 12 C -0.23 -6.25 10.70 -15.06 -0.16 -6.42 16 13 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 14 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 15 N -0.92 -26.93 11.51 55.49 0.64 -26.29 16 16 Si 0.91 21.82 29.56 -169.99 -5.02 16.80 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.11 2.15 8.69 -2.97 -0.03 2.12 16 21 O 0.12 1.45 11.03 15.50 0.17 1.62 16 22 N -0.39 -4.96 11.50 30.47 0.35 -4.61 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.19 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.40 4.87 8.54 -40.82 -0.35 4.52 16 28 H 0.12 2.23 7.51 -51.93 -0.39 1.85 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.97 7.37 -51.93 -0.38 1.59 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -32.15 298.84 -4.51 -36.66 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.62 Total: 0.23 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.45 Total: 9.69 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.03 Total: -57.07 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.06 Total: -10.81 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.15 -4.51 -36.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030239361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.997 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds