Wall clock time and date at job start Mon Mar 30 2020 01:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35726 * 116.99754 * 2 1 4 4 C 1.41860 * 126.78790 * 180.02562 * 3 2 1 5 5 C 1.36659 * 103.81154 * 179.97438 * 4 3 2 6 6 C 1.47539 * 126.87925 * 180.02562 * 5 4 3 7 7 O 1.21581 * 119.99938 * 359.97438 * 6 5 4 8 8 N 1.34783 * 120.00239 * 180.27832 * 6 5 4 9 9 C 1.46497 * 119.99946 * 179.72221 * 8 6 5 10 10 C 1.53948 * 113.74367 * 253.73667 * 9 8 6 11 11 N 1.47808 * 86.03757 * 222.08681 * 10 9 8 12 12 C 1.36934 * 134.45655 * 204.64236 * 11 10 9 13 13 H 1.08003 * 120.00547 * 173.34554 * 12 11 10 14 14 C 1.38815 * 119.99993 * 353.35074 * 12 11 10 15 15 N 1.31618 * 120.00023 * 5.06110 * 14 12 11 16 16 Si 1.86797 * 119.99985 * 185.06296 * 14 12 11 17 17 H 1.48501 * 109.47476 * 94.98802 * 16 14 12 18 18 H 1.48508 * 109.47217 * 214.98676 * 16 14 12 19 19 H 1.48505 * 109.47355 * 334.98369 * 16 14 12 20 20 C 1.47580 * 91.05319 * 24.54679 * 11 10 9 21 21 O 1.34660 * 106.24609 * 0.26101 * 5 4 3 22 22 N 1.20881 * 111.62841 * 359.53052 * 21 5 4 23 23 H 1.08990 * 109.47507 * 59.99972 * 1 2 3 24 24 H 1.09003 * 109.46482 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47096 * 299.99100 * 1 2 3 26 26 H 1.08001 * 128.09009 * 359.95276 * 4 3 2 27 27 H 0.96995 * 120.00048 * 359.71791 * 8 6 5 28 28 H 1.09005 * 112.94848 * 25.33232 * 9 8 6 29 29 H 1.08993 * 113.76508 * 336.35358 * 10 9 8 30 30 H 1.09004 * 113.76510 * 107.74634 * 10 9 8 31 31 H 0.96997 * 119.99974 * 179.97438 * 15 14 12 32 32 H 1.08995 * 113.77590 * 221.14826 * 20 11 10 33 33 H 1.09005 * 113.76819 * 89.75571 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4431 1.4506 -0.0005 5 6 3.5389 2.8138 -0.0009 6 6 4.7783 3.6143 -0.0020 7 8 5.8602 3.0596 -0.0022 8 7 4.7111 4.9604 0.0035 9 6 5.9418 5.7552 0.0085 10 6 6.2464 6.4174 1.3645 11 7 6.6209 7.6131 0.5804 12 6 7.4400 8.6877 0.8025 13 1 7.6307 9.3947 0.0086 14 6 8.0254 8.8685 2.0481 15 7 7.8745 7.9563 2.9848 16 14 9.0274 10.4064 2.3949 17 1 8.1636 11.4235 3.0466 18 1 10.1587 10.0676 3.2953 19 1 9.5565 10.9508 1.1186 20 6 5.7599 7.1827 -0.5383 21 8 2.2757 3.2803 0.0053 22 7 1.4685 2.3805 0.0000 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 4.2442 0.7262 -0.0003 27 1 3.8480 5.4030 0.0040 28 1 6.7916 5.2254 -0.4219 29 1 5.3661 6.5608 1.9909 30 1 7.0804 5.9617 1.8983 31 1 8.2839 8.0824 3.8551 32 1 6.2060 7.3371 -1.5207 33 1 4.7363 7.5515 -0.4719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030239361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:30 Heat of formation + Delta-G solvation = 33.804687 kcal Electronic energy + Delta-G solvation = -19502.044432 eV Core-core repulsion = 16147.433196 eV Total energy + Delta-G solvation = -3354.611236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.11007 -41.06510 -39.93984 -39.25430 -35.34083 -34.33668 -33.92283 -32.78110 -29.48801 -28.59671 -26.61138 -26.06309 -24.50062 -24.11473 -21.95924 -21.42365 -20.02874 -19.08836 -18.74360 -17.95303 -17.54949 -17.15854 -16.91904 -16.58772 -16.05854 -15.89888 -15.67758 -15.31982 -14.75388 -14.57768 -13.70937 -13.34422 -13.20700 -13.15950 -12.90271 -12.82933 -12.65392 -12.55565 -12.32264 -11.94763 -11.55162 -11.44606 -11.02931 -10.87020 -10.46899 -10.09852 -8.94482 -7.91925 -5.25810 -0.39446 0.94695 1.39203 1.48504 1.50119 1.57202 1.59180 1.83909 2.23395 2.51639 2.96435 3.25691 3.41410 3.63638 3.79156 3.81540 3.99952 4.26096 4.29313 4.33805 4.50815 4.59462 4.65238 4.80094 4.93830 5.01156 5.24808 5.50971 5.61937 5.82922 5.90387 6.27995 6.86635 6.90051 6.95053 7.59759 8.52360 9.25592 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.056755 B = 0.003284 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.233524 B = 8525.219684 C = 8560.134341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.289 6.289 3 C 0.203 3.797 4 C -0.152 4.152 5 C -0.053 4.053 6 C 0.609 3.391 7 O -0.543 6.543 8 N -0.683 5.683 9 C 0.119 3.881 10 C 0.153 3.847 11 N -0.639 5.639 12 C -0.234 4.234 13 H 0.091 0.909 14 C -0.068 4.068 15 N -0.953 5.953 16 Si 0.980 3.020 17 H -0.287 1.287 18 H -0.297 1.297 19 H -0.264 1.264 20 C 0.122 3.878 21 O 0.120 5.880 22 N -0.398 5.398 23 H 0.062 0.938 24 H 0.137 0.863 25 H 0.060 0.940 26 H 0.204 0.796 27 H 0.421 0.579 28 H 0.107 0.893 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.249 0.751 32 H 0.071 0.929 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.128 -13.310 -7.940 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.005 3.995 4 C -0.174 4.174 5 C -0.119 4.119 6 C 0.392 3.608 7 O -0.421 6.421 8 N -0.334 5.334 9 C 0.014 3.986 10 C 0.026 3.974 11 N -0.366 5.366 12 C -0.362 4.362 13 H 0.109 0.891 14 C -0.261 4.261 15 N -0.601 5.601 16 Si 0.808 3.192 17 H -0.214 1.214 18 H -0.224 1.224 19 H -0.188 1.188 20 C -0.003 4.003 21 O 0.053 5.947 22 N -0.122 5.122 23 H 0.081 0.919 24 H 0.155 0.845 25 H 0.079 0.921 26 H 0.221 0.779 27 H 0.258 0.742 28 H 0.125 0.875 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.305 -13.380 -7.796 21.773 hybrid contribution 0.605 0.599 0.740 1.128 sum -14.700 -12.780 -7.057 20.718 Atomic orbital electron populations 1.23398 0.74773 1.06358 1.02563 1.86233 1.24565 1.19628 1.89109 1.22006 0.90776 0.86146 1.00526 1.22425 0.94895 0.94959 1.05168 1.23791 0.86595 0.93876 1.07641 1.16597 0.85071 0.82266 0.76850 1.90885 1.27862 1.71820 1.51508 1.45809 1.11078 1.04718 1.71823 1.23443 0.86783 0.90369 0.98028 1.22579 0.96532 0.85331 0.92926 1.46020 1.49214 1.24148 1.17245 1.19416 1.19549 1.00776 0.96447 0.89102 1.25711 1.02897 1.01518 0.95974 1.70029 1.49776 1.35574 1.04736 0.85039 0.77403 0.78828 0.77936 1.21420 1.22409 1.18829 1.23039 0.95360 0.89118 0.92799 1.84950 1.11531 1.29564 1.68607 1.73970 1.15988 0.97020 1.25266 0.91910 0.84479 0.92121 0.77897 0.74167 0.87514 0.95362 0.94745 0.94245 0.91126 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.73 113.37 1.22 1.50 16 2 O -0.29 -5.59 10.57 -90.48 -0.96 -6.55 16 3 C 0.20 4.53 8.00 85.78 0.69 5.21 16 4 C -0.15 -3.39 10.97 22.80 0.25 -3.14 16 5 C -0.05 -1.28 7.29 24.36 0.18 -1.10 16 6 C 0.61 17.65 7.82 86.70 0.68 18.33 16 7 O -0.54 -19.58 16.53 -3.97 -0.07 -19.65 16 8 N -0.68 -18.93 5.37 -450.56 -2.42 -21.35 16 9 C 0.12 4.25 4.40 46.75 0.21 4.46 16 10 C 0.15 7.16 7.24 86.44 0.63 7.79 16 11 N -0.64 -31.64 3.70 -716.69 -2.65 -34.29 16 12 C -0.23 -12.80 10.70 84.03 0.90 -11.90 16 13 H 0.09 4.69 7.83 -2.91 -0.02 4.66 16 14 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 15 N -0.95 -57.70 11.51 21.65 0.25 -57.45 16 16 Si 0.98 45.29 29.56 68.60 2.03 47.31 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 18 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 C 0.12 4.37 8.69 86.49 0.75 5.12 16 21 O 0.12 2.76 11.03 65.65 0.72 3.48 16 22 N -0.40 -9.33 11.50 -172.00 -1.98 -11.31 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.20 3.87 8.06 -2.91 -0.02 3.85 16 27 H 0.42 9.18 8.54 -92.71 -0.79 8.38 16 28 H 0.11 4.09 7.51 -2.38 -0.02 4.07 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.03 1.87 7.37 -2.38 -0.02 1.86 16 31 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 32 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 2.08 8.11 -2.38 -0.02 2.06 16 Total: -1.00 -69.84 298.84 1.25 -68.60 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.36 Total: 8.32 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 5.96 Total: 22.89 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.80 Total: -124.40 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.30 Total: -22.72 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.84 1.25 -68.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030239361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.401 kcal (2) G-P(sol) polarization free energy of solvation -69.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds