Wall clock time and date at job start Mon Mar 30 2020 00:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00169 * 2 1 4 4 H 1.48499 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46800 * 299.99739 * 3 2 1 6 6 H 1.48492 * 109.46948 * 60.00098 * 3 2 1 7 7 C 1.38820 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99792 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99716 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64604 * 180.02562 * 9 7 2 11 11 C 1.54327 * 107.27168 * 178.97664 * 10 9 7 12 12 H 1.08999 * 110.72259 * 96.34080 * 11 10 9 13 13 N 1.46496 * 110.71803 * 219.44394 * 11 10 9 14 14 C 1.34777 * 119.99867 * 271.15212 * 13 11 10 15 15 O 1.21686 * 120.00193 * 0.27780 * 14 13 11 16 16 C 1.46726 * 119.99990 * 180.02562 * 14 13 11 17 17 C 1.36342 * 126.64139 * 180.02562 * 16 14 13 18 18 N 1.33691 * 107.45144 * 179.97438 * 17 16 14 19 19 C 1.30615 * 108.99629 * 359.97438 * 18 17 16 20 20 O 1.33674 * 109.15522 * 359.77031 * 19 18 17 21 21 C 1.55161 * 103.09910 * 337.89429 * 11 10 9 22 22 H 1.09005 * 110.99829 * 153.48880 * 21 11 10 23 23 O 1.42899 * 111.00553 * 277.33789 * 21 11 10 24 24 C 1.47427 * 125.65253 * 0.04205 * 9 7 2 25 25 H 0.97005 * 120.00318 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.88482 * 59.55705 * 10 9 7 27 27 H 1.08999 * 109.87848 * 298.38782 * 10 9 7 28 28 H 0.96999 * 120.00085 * 91.15818 * 13 11 10 29 29 H 1.07998 * 126.27883 * 359.96430 * 17 16 14 30 30 H 1.08001 * 125.42459 * 179.97438 * 19 18 17 31 31 H 0.96698 * 114.00255 * 180.02562 * 23 21 11 32 32 H 1.09001 * 110.36101 * 322.92670 * 24 9 7 33 33 H 1.08991 * 110.37069 * 85.14389 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 1.9317 -3.7275 0.0016 11 6 0.7782 -4.7525 0.0275 12 1 0.5490 -5.1007 -0.9796 13 7 1.1071 -5.8809 0.9019 14 6 1.7576 -6.9514 0.4046 15 8 2.0762 -6.9785 -0.7695 16 6 2.0866 -8.0819 1.2802 17 6 2.7376 -9.2253 0.9229 18 7 2.8329 -9.9904 2.0151 19 6 2.2733 -9.3699 3.0190 20 8 1.8084 -8.1886 2.6004 21 6 -0.4058 -3.9349 0.6082 22 1 -1.3610 -4.3371 0.2708 23 8 -0.3464 -3.8905 2.0353 24 6 -0.1417 -2.5331 -0.0009 25 1 -0.4851 0.8401 0.0004 26 1 2.5570 -3.8507 0.8858 27 1 2.5292 -3.8646 -0.8997 28 1 0.8567 -5.8576 1.8387 29 1 3.1081 -9.4686 -0.0619 30 1 2.2010 -9.7493 4.0276 31 1 -1.0664 -3.3906 2.4436 32 1 -0.6000 -1.7587 0.6142 33 1 -0.5267 -2.4850 -1.0194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083681240.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:22 Heat of formation + Delta-G solvation = -20.220925 kcal Electronic energy + Delta-G solvation = -20235.104922 eV Core-core repulsion = 16878.150959 eV Total energy + Delta-G solvation = -3356.953963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.59039 -39.69597 -37.88935 -35.20520 -34.78921 -34.04922 -31.83291 -30.62425 -28.57133 -27.12287 -24.87127 -23.77013 -22.84962 -21.03879 -20.56422 -19.90036 -18.60228 -17.38143 -17.00072 -16.82302 -16.76624 -15.55284 -14.90174 -14.67469 -14.49914 -14.32190 -14.08352 -13.61801 -13.15379 -12.97386 -12.59922 -11.86288 -11.71825 -11.40541 -11.14039 -11.09434 -10.92185 -10.72153 -10.41213 -10.27131 -10.00783 -9.88522 -9.35207 -9.29599 -8.85269 -8.72328 -6.89232 -5.73033 -3.12958 0.68942 2.26110 2.29948 3.06718 3.20942 3.37444 3.43494 3.45833 3.93350 4.43912 4.52127 4.75958 4.81715 5.24484 5.29791 5.32669 5.39212 5.45397 5.64441 5.84087 5.94671 5.98049 6.19281 6.35763 6.63279 6.82439 7.20238 7.25874 7.51819 7.59565 7.69825 8.01648 8.17088 8.27090 9.14530 9.75339 10.38079 11.32281 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.036880 B = 0.004296 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.033493 B = 6516.541357 C = 6682.985114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.131 3.869 11 C 0.140 3.860 12 H 0.105 0.895 13 N -0.692 5.692 14 C 0.601 3.399 15 O -0.519 6.519 16 C -0.098 4.098 17 C 0.045 3.955 18 N -0.496 5.496 19 C 0.194 3.806 20 O -0.189 6.189 21 C 0.067 3.933 22 H 0.061 0.939 23 O -0.562 6.562 24 C 0.127 3.873 25 H 0.252 0.748 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.413 0.587 29 H 0.197 0.803 30 H 0.255 0.745 31 H 0.381 0.619 32 H 0.117 0.883 33 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.192 -15.198 6.194 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.323 5.323 10 C 0.004 3.996 11 C 0.035 3.965 12 H 0.123 0.877 13 N -0.342 5.342 14 C 0.385 3.615 15 O -0.397 6.397 16 C -0.154 4.154 17 C -0.098 4.098 18 N -0.224 5.224 19 C -0.031 4.031 20 O -0.074 6.074 21 C 0.007 3.993 22 H 0.079 0.921 23 O -0.368 6.368 24 C 0.001 3.999 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.250 0.750 29 H 0.214 0.786 30 H 0.271 0.729 31 H 0.228 0.772 32 H 0.134 0.866 33 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.220 -15.856 5.335 16.731 hybrid contribution -0.421 1.730 0.543 1.862 sum -0.641 -14.125 5.878 15.313 Atomic orbital electron populations 1.69717 1.04927 1.24751 1.58199 1.24758 0.95768 0.97721 1.02423 0.85952 0.78706 0.83360 0.77230 1.20499 1.21717 1.21730 1.19154 0.90646 0.82217 1.42505 0.90292 1.44282 1.01412 0.99650 1.86909 1.21601 0.93707 0.85569 0.98757 1.22300 0.95681 0.84613 0.93867 0.87678 1.45782 1.56825 1.16808 1.14765 1.16436 0.78818 0.80479 0.85779 1.90904 1.54064 1.79904 1.14825 1.23386 1.09147 1.00937 0.81884 1.23595 0.97768 0.89227 0.99208 1.70439 1.20574 1.32154 0.99259 1.28395 0.93526 0.80117 1.01084 1.84536 1.61961 1.37323 1.23602 1.23637 0.95455 0.98675 0.81551 0.92105 1.86235 1.54614 1.76995 1.18924 1.22646 0.85929 0.92280 0.99017 0.93740 0.95173 0.95103 0.75014 0.78596 0.72905 0.77161 0.86599 0.95838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.14 10.09 55.49 0.56 -25.58 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.22 -6.04 10.27 -15.06 -0.15 -6.20 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.16 3.40 -169.95 -0.58 -15.74 16 10 C 0.13 2.86 7.00 -3.06 -0.02 2.84 16 11 C 0.14 2.54 3.15 -66.09 -0.21 2.33 16 12 H 0.11 1.90 7.62 -51.93 -0.40 1.51 16 13 N -0.69 -10.91 5.08 -53.32 -0.27 -11.18 16 14 C 0.60 9.49 7.79 -12.83 -0.10 9.39 16 15 O -0.52 -9.55 16.58 5.20 0.09 -9.47 16 16 C -0.10 -1.30 7.18 -36.84 -0.26 -1.56 16 17 C 0.04 0.55 11.66 -17.43 -0.20 0.34 16 18 N -0.50 -5.63 11.26 -14.67 -0.17 -5.80 16 19 C 0.19 1.67 13.21 52.25 0.69 2.36 16 20 O -0.19 -2.12 10.57 4.41 0.05 -2.07 16 21 C 0.07 1.19 4.31 -24.48 -0.11 1.09 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 23 O -0.56 -9.32 12.23 -35.23 -0.43 -9.75 16 24 C 0.13 2.91 5.62 -2.42 -0.01 2.89 16 25 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.03 0.68 8.03 -51.93 -0.42 0.27 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.41 6.10 7.37 -40.82 -0.30 5.80 16 29 H 0.20 2.10 8.06 -52.49 -0.42 1.68 16 30 H 0.26 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.38 5.03 9.12 45.56 0.42 5.44 16 32 H 0.12 2.94 5.87 -51.93 -0.30 2.63 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 290.44 15.07 4.38 4.38 Total: -1.00 -33.11 290.44 -4.54 -37.65 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -2.66 Total: 7.61 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -0.48 Total: 13.07 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.45 Total: -58.30 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.30 Total: -21.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.11 -4.54 -37.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083681240.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.430 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds