Wall clock time and date at job start Mon Mar 30 2020 00:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31130 * 126.54647 * 2 1 4 4 C 1.34501 * 105.61132 * 180.02562 * 3 2 1 5 5 C 1.50694 * 126.28733 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.71176 * 3.22643 * 5 4 3 7 7 C 1.53304 * 109.68184 * 123.75755 * 5 4 3 8 8 O 1.42957 * 109.22273 * 172.02625 * 7 5 4 9 9 C 1.42965 * 114.16647 * 297.42162 * 8 7 5 10 10 C 1.52876 * 109.30097 * 62.44558 * 9 8 7 11 11 N 1.47142 * 109.68336 * 242.68172 * 5 4 3 12 12 C 1.34779 * 120.98006 * 9.72476 * 11 5 4 13 13 O 1.21691 * 120.00175 * 4.76202 * 12 11 5 14 14 C 1.46372 * 119.99997 * 184.77005 * 12 11 5 15 15 H 1.07997 * 120.00108 * 351.75627 * 14 12 11 16 16 C 1.40053 * 120.00214 * 172.03806 * 14 12 11 17 17 N 1.30676 * 119.99765 * 359.72069 * 16 14 12 18 18 Si 1.86798 * 120.00228 * 179.72269 * 16 14 12 19 19 H 1.48494 * 109.47018 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47002 * 119.99893 * 18 16 14 21 21 H 1.48501 * 109.47061 * 239.99859 * 18 16 14 22 22 N 1.29948 * 107.42290 * 0.23703 * 4 3 2 23 23 O 1.21298 * 110.25041 * 359.58913 * 22 4 3 24 24 H 1.09004 * 109.46965 * 89.99936 * 1 2 3 25 25 H 1.09004 * 109.46847 * 209.99538 * 1 2 3 26 26 H 1.09000 * 109.47275 * 329.99864 * 1 2 3 27 27 H 1.08997 * 109.50846 * 291.94924 * 7 5 4 28 28 H 1.08998 * 109.51236 * 52.04601 * 7 5 4 29 29 H 1.08999 * 109.51556 * 182.50724 * 9 8 7 30 30 H 1.09003 * 109.50860 * 302.60390 * 9 8 7 31 31 H 1.08994 * 109.61991 * 188.11812 * 10 9 8 32 32 H 1.09002 * 109.51848 * 67.70146 * 10 9 8 33 33 H 0.97000 * 119.99794 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8111 1.3887 -0.0014 6 1 4.5656 2.4492 0.0564 7 6 5.6801 0.9940 1.1983 8 8 6.9538 1.6337 1.0877 9 6 7.7062 1.2443 -0.0640 10 6 6.9430 1.6469 -1.3259 11 7 5.5714 1.1222 -1.2326 12 6 5.0294 0.4138 -2.2430 13 8 3.8672 0.0582 -2.1820 14 6 5.8388 0.0719 -3.4137 15 1 6.8247 0.4968 -3.5313 16 6 5.3325 -0.8016 -4.3843 17 7 4.1395 -1.3157 -4.2421 18 14 6.3623 -1.2318 -5.8822 19 1 7.6651 -0.5232 -5.8073 20 1 6.5969 -2.6977 -5.9172 21 1 5.6433 -0.8160 -7.1133 22 7 3.4645 -0.7241 -0.0060 23 8 2.3029 -1.0735 -0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 5.1927 1.3103 2.1205 28 1 5.8147 -0.0875 1.2102 29 1 8.6765 1.7406 -0.0498 30 1 7.8498 0.1638 -0.0567 31 1 7.4376 1.2278 -2.2021 32 1 6.9158 2.7338 -1.4039 33 1 3.7887 -1.9203 -4.9145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116645472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:35 Heat of formation + Delta-G solvation = 14.910538 kcal Electronic energy + Delta-G solvation = -21415.195537 eV Core-core repulsion = 18059.764989 eV Total energy + Delta-G solvation = -3355.430548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.55489 -39.31514 -36.85869 -35.03626 -33.63140 -32.96800 -32.48814 -30.75704 -28.16166 -27.45377 -26.04516 -24.41325 -22.65000 -21.73049 -21.08880 -18.91992 -17.25253 -17.05813 -16.54154 -15.86685 -15.79353 -14.98205 -14.72654 -14.63243 -14.27776 -13.89278 -13.56058 -13.03182 -12.89975 -12.66108 -12.16458 -11.97598 -11.72388 -11.43850 -11.25447 -11.10010 -10.91107 -10.72030 -10.51186 -10.32309 -10.13987 -10.12124 -9.67766 -9.13429 -8.93326 -7.45640 -7.38192 -6.29609 -4.76990 2.15864 3.05483 3.10914 3.15717 3.18573 3.70752 3.93734 3.99983 4.20622 4.43445 4.53241 4.93106 5.19299 5.40171 5.45421 5.51398 5.56464 5.63494 5.64143 5.77130 5.82294 5.94162 5.98431 6.17046 6.31252 6.47533 6.61154 6.92065 7.28184 7.31866 7.37625 7.90852 8.15771 8.89858 9.17175 9.22595 10.40461 10.60269 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.009602 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.363406 B = 2915.427844 C = 4447.115544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.156 3.844 3 N -0.484 5.484 4 C 0.211 3.789 5 C 0.210 3.790 6 H 0.086 0.914 7 C 0.062 3.938 8 O -0.382 6.382 9 C 0.043 3.957 10 C 0.090 3.910 11 N -0.641 5.641 12 C 0.562 3.438 13 O -0.558 6.558 14 C -0.541 4.541 15 H 0.074 0.926 16 C 0.088 3.912 17 N -0.763 5.763 18 Si 0.909 3.091 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.276 1.276 22 N -0.352 5.352 23 O 0.081 5.919 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 2.721 7.665 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.064 4.064 3 N -0.221 5.221 4 C -0.061 4.061 5 C 0.103 3.897 6 H 0.104 0.896 7 C -0.017 4.017 8 O -0.300 6.300 9 C -0.034 4.034 10 C -0.034 4.034 11 N -0.382 5.382 12 C 0.369 3.631 13 O -0.437 6.437 14 C -0.577 4.577 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.391 5.391 18 Si 0.734 3.266 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.201 1.201 22 N -0.060 5.060 23 O 0.021 5.979 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.377 2.444 7.701 8.088 hybrid contribution 0.321 -0.386 -1.289 1.383 sum -0.056 2.058 6.412 6.735 Atomic orbital electron populations 1.20157 0.81653 1.04458 1.04712 1.28227 0.98172 0.81486 0.98563 1.71553 1.00300 1.29242 1.21010 1.24445 0.93624 0.88210 0.99780 1.19474 0.85515 0.96669 0.88017 0.89644 1.22879 0.84103 0.97721 0.97023 1.87878 1.29349 1.67990 1.44812 1.23016 0.94576 1.00108 0.85749 1.22071 0.84022 0.98361 0.98929 1.48530 1.13956 1.60140 1.15620 1.18287 0.87089 0.76189 0.81567 1.90562 1.17906 1.56562 1.78696 1.20905 1.02490 1.29617 1.04684 0.90790 1.25720 0.94633 0.94363 0.98496 1.70008 1.14839 1.22205 1.32034 0.86288 0.80507 0.78714 0.81140 1.18668 1.20092 1.20096 1.74409 0.96445 1.15534 1.19646 1.85165 1.11759 1.35566 1.65453 0.88877 0.89396 0.88705 0.88469 0.92195 0.88382 0.92690 0.87627 0.92731 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.63 10.51 36.01 0.38 -0.25 16 2 C 0.16 3.02 8.51 -13.06 -0.11 2.91 16 3 N -0.48 -10.65 11.55 -9.87 -0.11 -10.76 16 4 C 0.21 4.92 4.36 -156.37 -0.68 4.24 16 5 C 0.21 4.48 3.62 -68.58 -0.25 4.23 16 6 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 7 C 0.06 1.11 6.27 37.31 0.23 1.34 16 8 O -0.38 -6.58 10.74 -35.23 -0.38 -6.96 16 9 C 0.04 0.69 6.97 37.09 0.26 0.95 16 10 C 0.09 1.69 6.53 -3.75 -0.02 1.66 16 11 N -0.64 -15.02 3.03 -167.97 -0.51 -15.53 16 12 C 0.56 15.93 7.41 -12.99 -0.10 15.83 16 13 O -0.56 -17.37 11.01 3.98 0.04 -17.33 16 14 C -0.54 -15.01 8.85 -35.63 -0.32 -15.32 16 15 H 0.07 1.86 5.74 -52.49 -0.30 1.56 16 16 C 0.09 2.43 5.50 -17.36 -0.10 2.34 16 17 N -0.76 -22.62 11.86 55.55 0.66 -21.97 16 18 Si 0.91 19.96 29.56 -169.99 -5.02 14.94 16 19 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 N -0.35 -8.62 10.34 30.90 0.32 -8.30 16 23 O 0.08 1.80 11.31 16.90 0.19 1.99 16 24 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.11 2.00 5.41 -51.93 -0.28 1.71 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 LS Contribution 281.89 15.07 4.25 4.25 Total: -1.00 -36.44 281.89 -4.78 -41.22 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -3.52 Total: 0.52 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: -0.70 Total: 17.92 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.36 Total: -56.56 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.14 Total: -22.29 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -36.44 -4.78 -41.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116645472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.134 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds