Wall clock time and date at job start Mon Mar 30 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 N 1.40044 * 125.97121 * 269.69348 * 6 5 3 8 8 C 1.30791 * 108.43035 * 179.81435 * 7 6 5 9 9 C 1.40413 * 108.20095 * 0.43768 * 8 7 6 10 10 N 1.40169 * 126.14417 * 179.69764 * 9 8 7 11 11 C 1.34784 * 119.99982 * 0.02610 * 10 9 8 12 12 O 1.21789 * 119.99469 * 0.02562 * 11 10 9 13 13 C 1.41793 * 120.00119 * 179.97438 * 11 10 9 14 14 H 1.08005 * 120.00476 * 359.97438 * 13 11 10 15 15 C 1.40135 * 120.00146 * 179.97438 * 13 11 10 16 16 N 1.30630 * 119.99889 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00233 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46918 * 60.00055 * 17 15 13 19 19 H 1.48498 * 109.47374 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47525 * 300.00659 * 17 15 13 21 21 C 1.35176 * 125.97615 * 89.99705 * 6 5 3 22 22 C 1.50700 * 126.19732 * 359.97438 * 21 6 5 23 23 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 24 24 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 25 25 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 27 27 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 28 28 H 1.07994 * 125.89807 * 180.19205 * 8 7 6 29 29 H 0.96996 * 120.00326 * 180.02562 * 10 9 8 30 30 H 0.96996 * 119.99934 * 179.97438 * 16 15 13 31 31 H 1.09003 * 109.46795 * 90.00367 * 22 21 6 32 32 H 1.09000 * 109.47043 * 209.99791 * 22 21 6 33 33 H 1.09001 * 109.47117 * 330.00174 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 7 4.2161 3.4639 -1.1481 8 6 4.5654 4.6626 -0.7585 9 6 4.5755 4.6820 0.6454 10 7 4.9028 5.7786 1.4548 11 6 5.2481 6.9531 0.8910 12 8 5.2754 7.0615 -0.3218 13 6 5.5786 8.0626 1.7097 14 1 5.5532 7.9667 2.7852 15 6 5.9382 9.2836 1.1235 16 7 5.9685 9.3997 -0.1773 17 14 6.3729 10.7454 2.2021 18 1 7.5375 10.4010 3.0567 19 1 6.7142 11.9090 1.3449 20 1 5.2121 11.0885 3.0623 21 6 4.2111 3.4443 1.0793 22 6 4.0854 3.0059 2.5157 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 3.9595 0.7833 0.8836 27 1 3.9525 0.7785 -0.8964 28 1 4.8082 5.4929 -1.4050 29 1 4.8807 5.6922 2.4207 30 1 6.2170 10.2449 -0.5831 31 1 5.0406 2.6086 2.8591 32 1 3.8040 3.8593 3.1327 33 1 3.3209 2.2329 2.5941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116866678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:04 Heat of formation + Delta-G solvation = -36.600520 kcal Electronic energy + Delta-G solvation = -19927.172834 eV Core-core repulsion = 16569.508598 eV Total energy + Delta-G solvation = -3357.664235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99136 -40.17629 -37.43825 -36.58435 -33.71105 -32.92811 -32.43481 -30.77919 -28.52037 -27.15554 -26.45042 -25.38659 -21.80234 -21.30759 -19.70612 -19.09335 -17.93139 -17.28006 -16.75391 -16.67273 -15.98785 -15.36687 -14.93863 -14.57754 -14.19301 -13.68730 -13.55593 -13.16134 -12.73992 -12.71453 -12.40354 -12.35247 -12.23193 -12.15731 -11.69304 -11.26708 -11.09241 -10.99466 -10.68735 -10.56754 -10.33260 -10.11361 -9.49849 -8.84353 -8.68085 -7.65314 -6.58851 -6.31136 -4.81987 1.97532 2.04833 2.59925 3.05256 3.10737 3.16191 3.18049 3.62902 4.03288 4.53220 4.55377 4.62259 4.89068 4.92033 4.96694 4.99106 5.11710 5.29495 5.33902 5.69743 5.84121 5.84774 5.98467 6.14945 6.39735 6.47927 7.24638 7.32436 7.40372 7.64550 7.90170 8.09048 8.30547 8.36824 8.86845 9.42060 10.45891 10.67723 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.043828 B = 0.003978 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.702388 B = 7037.534583 C = 7197.799277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.435 3.565 4 O -0.480 6.480 5 C 0.162 3.838 6 N -0.379 5.379 7 N -0.295 5.295 8 C 0.063 3.937 9 C 0.069 3.931 10 N -0.676 5.676 11 C 0.551 3.449 12 O -0.572 6.572 13 C -0.540 4.540 14 H 0.069 0.931 15 C 0.089 3.911 16 N -0.749 5.749 17 Si 0.912 3.088 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.012 4.012 22 C -0.073 4.073 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.213 0.787 29 H 0.389 0.611 30 H 0.272 0.728 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.403 -16.622 4.891 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.274 3.726 4 O -0.364 6.364 5 C 0.036 3.964 6 N -0.168 5.168 7 N -0.115 5.115 8 C -0.125 4.125 9 C -0.038 4.038 10 N -0.320 5.320 11 C 0.360 3.640 12 O -0.456 6.456 13 C -0.575 4.575 14 H 0.087 0.913 15 C -0.134 4.134 16 N -0.376 5.376 17 Si 0.736 3.264 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.138 4.138 22 C -0.131 4.131 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.145 0.855 27 H 0.150 0.850 28 H 0.229 0.771 29 H 0.222 0.778 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.811 -16.861 2.892 18.068 hybrid contribution -0.039 1.221 1.749 2.134 sum -5.850 -15.640 4.641 17.331 Atomic orbital electron populations 1.23258 0.76197 1.03559 1.02720 1.86478 1.23576 1.33301 1.84574 1.24479 0.92776 0.81802 0.73558 1.90767 1.66527 1.36213 1.42942 1.20649 0.87178 0.81150 1.07387 1.47097 1.57112 1.08533 1.04029 1.77242 1.22941 1.03913 1.07383 1.24820 0.98292 0.94808 0.94610 1.17749 1.06217 0.88091 0.91745 1.43519 1.71182 1.09632 1.07678 1.16972 0.77988 0.80591 0.88453 1.90496 1.57939 1.82466 1.14727 1.19960 1.48270 0.95223 0.94079 0.91304 1.25733 0.93081 0.99616 0.94936 1.69995 1.31915 1.25278 1.10419 0.86357 0.79636 0.80076 0.80293 1.19115 1.20416 1.19134 1.20018 1.11798 0.91973 0.90007 1.20159 1.01554 1.01770 0.89652 0.91900 0.91858 0.88034 0.85467 0.85038 0.77115 0.77848 0.91665 0.91115 0.90423 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -3.91 10.57 -39.26 -0.41 -4.32 16 3 C 0.43 5.87 8.03 36.00 0.29 6.16 16 4 O -0.48 -8.69 16.18 -18.76 -0.30 -8.99 16 5 C 0.16 1.93 6.66 -5.20 -0.03 1.90 16 6 N -0.38 -6.66 3.10 -58.06 -0.18 -6.84 16 7 N -0.29 -6.25 12.56 30.73 0.39 -5.86 16 8 C 0.06 1.50 10.84 -17.18 -0.19 1.31 16 9 C 0.07 1.54 6.86 -83.99 -0.58 0.96 16 10 N -0.68 -15.66 5.44 -12.61 -0.07 -15.73 16 11 C 0.55 15.44 7.54 -14.90 -0.11 15.33 16 12 O -0.57 -17.78 12.02 5.11 0.06 -17.72 16 13 C -0.54 -14.76 9.31 -37.51 -0.35 -15.11 16 14 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 15 C 0.09 2.40 5.50 -17.35 -0.10 2.31 16 16 N -0.75 -21.64 11.73 55.55 0.65 -20.99 16 17 Si 0.91 19.43 29.56 -169.99 -5.02 14.41 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 C -0.01 -0.22 6.97 -81.88 -0.57 -0.80 16 22 C -0.07 -0.95 9.72 36.01 0.35 -0.60 16 23 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 24 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.13 1.03 7.66 -51.93 -0.40 0.63 16 27 H 0.13 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.21 5.46 5.91 -52.49 -0.31 5.15 16 29 H 0.39 7.69 8.05 -40.82 -0.33 7.36 16 30 H 0.27 7.13 8.29 -40.82 -0.34 6.80 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.99 7.61 -51.93 -0.40 0.60 16 33 H 0.06 0.64 7.73 -51.93 -0.40 0.24 16 LS Contribution 298.25 15.07 4.49 4.49 Total: -1.00 -36.63 298.25 -4.11 -40.74 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -3.49 Total: 7.96 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -0.22 Total: 12.84 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.79 Total: -49.42 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.66 Total: -31.03 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.63 -4.11 -40.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116866678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.140 kcal (2) G-P(sol) polarization free energy of solvation -36.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds