Wall clock time and date at job start Mon Mar 30 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 N 1.46499 * 109.47547 * 179.72203 * 5 3 2 7 7 N 1.40044 * 125.97121 * 269.69348 * 6 5 3 8 8 C 1.30791 * 108.43035 * 179.81435 * 7 6 5 9 9 C 1.40413 * 108.20095 * 0.43768 * 8 7 6 10 10 N 1.40169 * 126.14417 * 179.69764 * 9 8 7 11 11 C 1.34784 * 119.99982 * 0.02610 * 10 9 8 12 12 O 1.21789 * 119.99469 * 0.02562 * 11 10 9 13 13 C 1.41793 * 120.00119 * 179.97438 * 11 10 9 14 14 H 1.08005 * 120.00476 * 359.97438 * 13 11 10 15 15 C 1.40135 * 120.00146 * 179.97438 * 13 11 10 16 16 N 1.30630 * 119.99889 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00233 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46918 * 60.00055 * 17 15 13 19 19 H 1.48498 * 109.47374 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47525 * 300.00659 * 17 15 13 21 21 C 1.35176 * 125.97615 * 89.99705 * 6 5 3 22 22 C 1.50700 * 126.19732 * 359.97438 * 21 6 5 23 23 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 24 24 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 25 25 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 27 27 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 28 28 H 1.07994 * 125.89807 * 180.19205 * 8 7 6 29 29 H 0.96996 * 120.00326 * 180.02562 * 10 9 8 30 30 H 0.96996 * 119.99934 * 179.97438 * 16 15 13 31 31 H 1.09003 * 109.46795 * 90.00367 * 22 21 6 32 32 H 1.09000 * 109.47043 * 209.99791 * 22 21 6 33 33 H 1.09001 * 109.47117 * 330.00174 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 7 3.9816 2.6799 -0.0117 7 7 4.2161 3.4639 -1.1481 8 6 4.5654 4.6626 -0.7585 9 6 4.5755 4.6820 0.6454 10 7 4.9028 5.7786 1.4548 11 6 5.2481 6.9531 0.8910 12 8 5.2754 7.0615 -0.3218 13 6 5.5786 8.0626 1.7097 14 1 5.5532 7.9667 2.7852 15 6 5.9382 9.2836 1.1235 16 7 5.9685 9.3997 -0.1773 17 14 6.3729 10.7454 2.2021 18 1 7.5375 10.4010 3.0567 19 1 6.7142 11.9090 1.3449 20 1 5.2121 11.0885 3.0623 21 6 4.2111 3.4443 1.0793 22 6 4.0854 3.0059 2.5157 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 3.9595 0.7833 0.8836 27 1 3.9525 0.7785 -0.8964 28 1 4.8082 5.4929 -1.4050 29 1 4.8807 5.6922 2.4207 30 1 6.2170 10.2449 -0.5831 31 1 5.0406 2.6086 2.8591 32 1 3.8040 3.8593 3.1327 33 1 3.3209 2.2329 2.5941 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116866678.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:04 Heat of formation + Delta-G solvation = -64.879706 kcal Electronic energy + Delta-G solvation = -19928.399111 eV Core-core repulsion = 16569.508598 eV Total energy + Delta-G solvation = -3358.890513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.41169 -41.37296 -39.38493 -37.65701 -35.46959 -34.46616 -34.37009 -32.19757 -29.71933 -28.82588 -27.55772 -26.98731 -23.24323 -22.89873 -21.22826 -20.73240 -19.08164 -18.96676 -18.08563 -17.71207 -17.38511 -17.30045 -16.35490 -15.95877 -15.86289 -14.89536 -14.77257 -14.68949 -14.43157 -14.30830 -13.72988 -13.51855 -13.39807 -13.18424 -13.04807 -12.90902 -12.75479 -12.62279 -12.03676 -11.90232 -11.88867 -11.69007 -11.27415 -10.84532 -10.17907 -9.78290 -8.32424 -8.32110 -6.92026 0.64654 0.99856 1.30822 1.42674 1.44575 1.58020 1.86756 1.92014 2.25519 2.55355 3.11152 3.61282 3.73516 3.75589 3.83709 4.12018 4.15746 4.27842 4.27997 4.39979 4.67553 4.71166 4.76495 5.01337 5.03537 5.21335 5.26876 5.51883 5.93024 6.03235 6.22323 6.46997 6.59421 6.72245 6.80083 7.54346 8.47135 8.65311 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.043828 B = 0.003978 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.702388 B = 7037.534583 C = 7197.799277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.444 3.556 4 O -0.535 6.535 5 C 0.147 3.853 6 N -0.366 5.366 7 N -0.310 5.310 8 C 0.029 3.971 9 C 0.012 3.988 10 N -0.667 5.667 11 C 0.533 3.467 12 O -0.618 6.618 13 C -0.566 4.566 14 H 0.092 0.908 15 C 0.031 3.969 16 N -0.804 5.804 17 Si 1.002 2.998 18 H -0.251 1.251 19 H -0.275 1.275 20 H -0.254 1.254 21 C 0.030 3.970 22 C -0.075 4.075 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.141 0.859 26 H 0.182 0.818 27 H 0.159 0.841 28 H 0.174 0.826 29 H 0.404 0.596 30 H 0.277 0.723 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 -19.007 7.855 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.266 6.266 3 C 0.286 3.714 4 O -0.423 6.423 5 C 0.025 3.975 6 N -0.154 5.154 7 N -0.133 5.133 8 C -0.158 4.158 9 C -0.093 4.093 10 N -0.313 5.313 11 C 0.342 3.658 12 O -0.505 6.505 13 C -0.602 4.602 14 H 0.110 0.890 15 C -0.186 4.186 16 N -0.432 5.432 17 Si 0.821 3.179 18 H -0.175 1.175 19 H -0.200 1.200 20 H -0.178 1.178 21 C -0.099 4.099 22 C -0.134 4.134 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.159 0.841 26 H 0.199 0.801 27 H 0.177 0.823 28 H 0.190 0.810 29 H 0.239 0.761 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.039 -19.357 5.867 21.109 hybrid contribution -0.106 1.620 0.815 1.817 sum -6.145 -17.737 6.682 19.925 Atomic orbital electron populations 1.23570 0.74638 1.05978 1.02208 1.86475 1.24960 1.31433 1.83684 1.24585 0.93125 0.81713 0.72004 1.90776 1.67724 1.38042 1.45779 1.21380 0.86590 0.78099 1.11409 1.47598 1.54673 1.10158 1.02924 1.77131 1.23656 1.03487 1.08998 1.24284 1.00907 0.95136 0.95473 1.17985 1.10392 0.89722 0.91230 1.42965 1.71060 1.08919 1.08356 1.17393 0.78002 0.82250 0.88175 1.90479 1.59767 1.83713 1.16560 1.20507 1.48625 0.95767 0.95251 0.89014 1.27023 0.92082 1.03145 0.96396 1.70171 1.33342 1.26572 1.13133 0.85005 0.79933 0.75040 0.77928 1.17518 1.19964 1.17833 1.20804 1.06512 0.90141 0.92420 1.20450 1.04414 1.02952 0.85543 0.92041 0.92884 0.84108 0.80104 0.82311 0.80970 0.76051 0.91243 0.87693 0.89999 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -6.32 10.57 -51.41 -0.54 -6.86 16 3 C 0.44 10.74 8.03 71.23 0.57 11.31 16 4 O -0.53 -18.74 16.18 21.94 0.36 -18.39 16 5 C 0.15 2.94 6.66 85.63 0.57 3.51 16 6 N -0.37 -12.21 3.10 -337.60 -1.05 -13.26 16 7 N -0.31 -13.52 12.56 -56.69 -0.71 -14.23 16 8 C 0.03 1.44 10.84 85.38 0.93 2.37 16 9 C 0.01 0.57 6.86 37.84 0.26 0.83 16 10 N -0.67 -31.82 5.44 -311.97 -1.70 -33.52 16 11 C 0.53 31.37 7.54 85.12 0.64 32.01 16 12 O -0.62 -41.29 12.02 -4.63 -0.06 -41.35 16 13 C -0.57 -31.67 9.31 23.61 0.22 -31.45 16 14 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 15 C 0.03 1.72 5.50 85.33 0.47 2.19 16 16 N -0.80 -48.63 11.73 21.85 0.26 -48.38 16 17 Si 1.00 39.99 29.56 68.60 2.03 42.02 16 18 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 21 C 0.03 1.03 6.97 41.55 0.29 1.32 16 22 C -0.08 -1.63 9.72 71.24 0.69 -0.94 16 23 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 24 H 0.05 0.88 8.13 -2.38 -0.02 0.86 16 25 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.18 1.75 7.66 -2.38 -0.02 1.74 16 27 H 0.16 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.17 9.98 5.91 -2.91 -0.02 9.96 16 29 H 0.40 15.95 8.05 -92.71 -0.75 15.21 16 30 H 0.28 15.19 8.29 -92.71 -0.77 14.42 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.79 7.61 -2.39 -0.02 1.78 16 33 H 0.09 1.44 7.73 -2.39 -0.02 1.42 16 Total: -1.00 -87.76 298.25 4.84 -82.92 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.41 Total: 28.28 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 5.84 Total: 22.76 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -3.20 Total: -109.38 kcal Atomic # 8 Polarization: -66.35 SS G_CDS: -0.24 Total: -66.59 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -87.76 4.84 -82.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116866678.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.042 kcal (2) G-P(sol) polarization free energy of solvation -87.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds