Wall clock time and date at job start Mon Mar 30 2020 00:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33228 * 126.01358 * 2 1 4 4 C 1.31546 * 109.75803 * 180.29044 * 3 2 1 5 5 O 1.35201 * 125.49432 * 179.76804 * 4 3 2 6 6 N 1.34944 * 109.01373 * 359.74580 * 4 3 2 7 7 H 0.97000 * 126.54896 * 179.97438 * 6 4 3 8 8 C 1.36714 * 126.02170 * 179.86442 * 2 1 3 9 9 C 1.46377 * 126.82653 * 359.97438 * 8 2 1 10 10 O 1.21739 * 120.00011 * 359.71173 * 9 8 2 11 11 N 1.34776 * 120.00503 * 179.70754 * 9 8 2 12 12 C 1.47578 * 134.49473 * 179.97438 * 11 9 8 13 13 C 1.53950 * 86.11711 * 204.66225 * 12 11 9 14 14 O 1.42905 * 113.73786 * 90.74298 * 13 12 11 15 15 C 1.50702 * 113.74361 * 221.94119 * 13 12 11 16 16 H 1.07997 * 119.99716 * 358.07712 * 15 13 12 17 17 C 1.37877 * 119.99683 * 178.07946 * 15 13 12 18 18 N 1.31519 * 119.99375 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00220 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47007 * 90.00544 * 19 17 15 21 21 H 1.48500 * 109.47115 * 209.99966 * 19 17 15 22 22 H 1.48496 * 109.47096 * 330.00048 * 19 17 15 23 23 C 1.47930 * 134.49981 * 0.03761 * 11 9 8 24 24 H 1.09005 * 109.47036 * 270.13444 * 1 2 3 25 25 H 1.08997 * 109.47307 * 30.13505 * 1 2 3 26 26 H 1.08997 * 109.46966 * 150.13987 * 1 2 3 27 27 H 0.96700 * 114.00056 * 269.98084 * 5 4 3 28 28 H 1.09007 * 113.76850 * 90.36997 * 12 11 9 29 29 H 1.08994 * 113.87568 * 318.97975 * 12 11 9 30 30 H 0.96696 * 114.00036 * 181.92461 * 14 13 12 31 31 H 0.97000 * 119.99411 * 179.97438 * 18 17 15 32 32 H 1.09003 * 113.86941 * 41.06551 * 23 11 9 33 33 H 1.09003 * 113.76390 * 269.57872 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0063 5 8 4.6149 1.5465 -0.0126 6 7 3.6182 -0.6384 -0.0049 7 1 4.4243 -1.1779 -0.0089 8 6 2.3110 -1.1057 0.0026 9 6 1.8793 -2.5044 0.0065 10 8 0.6924 -2.7751 0.0129 11 7 2.7958 -3.4926 0.0028 12 6 2.7273 -4.9668 0.0052 13 6 4.1300 -4.9266 0.6383 14 8 4.1158 -4.9015 2.0671 15 6 5.0782 -5.9553 0.0782 16 1 4.7369 -6.6517 -0.6733 17 6 6.3814 -6.0074 0.5253 18 7 7.2090 -6.9048 0.0361 19 14 6.9719 -4.8023 1.8247 20 1 6.7478 -5.3804 3.1741 21 1 8.4208 -4.5388 1.6336 22 1 6.2166 -3.5299 1.6995 23 6 4.2745 -3.5354 -0.0042 24 1 -0.3633 0.0024 1.0277 25 1 -0.3634 0.8887 -0.5159 26 1 -0.3633 -0.8912 -0.5116 27 1 4.9194 1.7889 -0.8978 28 1 2.7077 -5.4074 -0.9916 29 1 1.9593 -5.3716 0.6642 30 1 4.9940 -4.8465 2.4682 31 1 8.1260 -6.9412 0.3504 32 1 4.7402 -2.7965 0.6479 33 1 4.7086 -3.5561 -1.0039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118314310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:08 Heat of formation + Delta-G solvation = -9.716173 kcal Electronic energy + Delta-G solvation = -20646.046533 eV Core-core repulsion = 17289.548091 eV Total energy + Delta-G solvation = -3356.498443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.28180 -39.78688 -37.94305 -37.30570 -34.71950 -33.29730 -32.69679 -30.80218 -29.25570 -27.00887 -25.95819 -25.29287 -22.71443 -21.20875 -20.06015 -19.74733 -18.62534 -17.73775 -17.21995 -16.47224 -16.37513 -15.82289 -15.50111 -15.02442 -14.22828 -13.82599 -13.67837 -13.20874 -13.19239 -12.96473 -12.63237 -12.51444 -12.40087 -12.29579 -12.04373 -11.45224 -11.12645 -10.77768 -10.39807 -10.28952 -10.12081 -9.95615 -9.48416 -9.17879 -8.90695 -8.53499 -8.15584 -6.56483 -4.63843 1.19756 2.33841 2.64519 2.82991 2.87143 3.01285 3.11869 3.47879 3.75389 3.87869 4.45391 4.64896 4.79639 4.94665 5.07731 5.30754 5.53917 5.73606 5.80045 5.83966 5.90105 5.95599 6.04683 6.17266 6.23576 6.40975 6.44783 6.59125 7.03223 7.43347 7.71185 7.87983 8.00445 8.32617 8.38051 8.48232 9.00041 10.55493 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.006517 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.874357 B = 4295.262262 C = 5133.792277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.102 3.898 3 N -0.489 5.489 4 C 0.400 3.600 5 O -0.442 6.442 6 N -0.553 5.553 7 H 0.423 0.577 8 C -0.065 4.065 9 C 0.610 3.390 10 O -0.536 6.536 11 N -0.634 5.634 12 C 0.132 3.868 13 C 0.200 3.800 14 O -0.551 6.551 15 C -0.539 4.539 16 H 0.094 0.906 17 C 0.082 3.918 18 N -0.871 5.871 19 Si 0.858 3.142 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.262 1.262 23 C 0.050 3.950 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.092 0.908 27 H 0.405 0.595 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.353 0.647 31 H 0.272 0.728 32 H 0.062 0.938 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 11.655 -1.895 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.033 4.033 3 N -0.220 5.220 4 C 0.099 3.901 5 O -0.243 6.243 6 N -0.173 5.173 7 H 0.266 0.734 8 C -0.180 4.180 9 C 0.399 3.601 10 O -0.415 6.415 11 N -0.367 5.367 12 C 0.011 3.989 13 C 0.159 3.841 14 O -0.362 6.362 15 C -0.576 4.576 16 H 0.112 0.888 17 C -0.124 4.124 18 N -0.507 5.507 19 Si 0.687 3.313 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.187 1.187 23 C -0.073 4.073 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.111 0.889 27 H 0.262 0.738 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.205 0.795 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.829 12.369 -1.384 13.350 hybrid contribution 2.372 -0.190 0.288 2.397 sum -2.456 12.178 -1.096 12.472 Atomic orbital electron populations 1.20302 0.85946 1.03710 1.03249 1.20901 0.96834 0.85803 0.99726 1.70232 0.98532 1.30397 1.22858 1.20156 0.87394 0.78827 1.03764 1.84833 1.43454 1.61670 1.34298 1.44107 1.09351 1.07910 1.55956 0.73415 1.20955 0.82798 0.95337 1.18927 1.16287 0.84963 0.81685 0.77125 1.90794 1.15366 1.82611 1.52712 1.50117 1.07652 1.07762 1.71212 1.23318 0.97641 0.77142 1.00790 1.20492 0.94025 0.90590 0.78994 1.86491 1.32548 1.96680 1.20466 1.21211 0.94239 1.17093 1.25072 0.88828 1.25009 0.96640 0.95002 0.95798 1.69849 1.06062 1.33070 1.41674 0.87360 0.79113 0.81925 0.82925 1.19087 1.20758 1.18737 1.24887 0.78710 1.01658 1.02044 0.90610 0.91056 0.88927 0.73763 0.88330 0.90037 0.79531 0.91729 0.91979 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 9.87 36.01 0.36 -0.65 16 2 C 0.10 1.64 7.14 -82.54 -0.59 1.05 16 3 N -0.49 -7.73 11.22 -10.83 -0.12 -7.85 16 4 C 0.40 5.64 9.43 -89.59 -0.84 4.79 16 5 O -0.44 -4.77 13.62 -17.30 -0.24 -5.00 16 6 N -0.55 -8.06 5.99 -10.91 -0.07 -8.13 16 7 H 0.42 5.64 5.96 -40.82 -0.24 5.39 16 8 C -0.06 -1.09 7.02 -81.98 -0.58 -1.67 16 9 C 0.61 11.55 8.01 -12.99 -0.10 11.45 16 10 O -0.54 -11.02 15.53 5.15 0.08 -10.94 16 11 N -0.63 -11.95 3.62 -179.68 -0.65 -12.60 16 12 C 0.13 2.56 8.23 -2.97 -0.02 2.54 16 13 C 0.20 4.26 1.05 -90.86 -0.10 4.16 16 14 O -0.55 -12.34 13.35 -35.23 -0.47 -12.81 16 15 C -0.54 -13.06 9.20 -34.44 -0.32 -13.37 16 16 H 0.09 2.44 8.06 -52.49 -0.42 2.01 16 17 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 18 N -0.87 -23.28 13.96 55.43 0.77 -22.50 16 19 Si 0.86 17.83 24.31 -169.99 -4.13 13.69 16 20 H -0.26 -5.44 7.05 56.52 0.40 -5.05 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -4.99 5.16 56.52 0.29 -4.70 16 23 C 0.05 0.92 5.91 -2.79 -0.02 0.90 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.33 6.47 -51.93 -0.34 0.99 16 27 H 0.40 2.06 9.06 45.56 0.41 2.47 16 28 H 0.10 1.75 8.09 -51.92 -0.42 1.33 16 29 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.35 7.53 3.57 45.56 0.16 7.69 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.06 1.07 5.23 -51.93 -0.27 0.80 16 33 H 0.10 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 279.49 15.07 4.21 4.21 Total: -1.00 -30.54 279.49 -4.97 -35.52 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -2.05 Total: 15.30 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -2.31 Total: 11.12 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.06 Total: -51.08 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.63 Total: -28.75 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -4.13 Total: 13.69 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.54 -4.97 -35.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118314310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.799 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds