Wall clock time and date at job start Mon Mar 30 2020 00:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33228 * 126.01358 * 2 1 4 4 C 1.31546 * 109.75803 * 180.29044 * 3 2 1 5 5 O 1.35201 * 125.49432 * 179.76804 * 4 3 2 6 6 N 1.34944 * 109.01373 * 359.74580 * 4 3 2 7 7 H 0.97000 * 126.54896 * 179.97438 * 6 4 3 8 8 C 1.36714 * 126.02170 * 179.86442 * 2 1 3 9 9 C 1.46377 * 126.82653 * 359.97438 * 8 2 1 10 10 O 1.21739 * 120.00011 * 359.71173 * 9 8 2 11 11 N 1.34776 * 120.00503 * 179.70754 * 9 8 2 12 12 C 1.47578 * 134.49473 * 179.97438 * 11 9 8 13 13 C 1.53950 * 86.11711 * 204.66225 * 12 11 9 14 14 O 1.42905 * 113.73786 * 90.74298 * 13 12 11 15 15 C 1.50702 * 113.74361 * 221.94119 * 13 12 11 16 16 H 1.07997 * 119.99716 * 358.07712 * 15 13 12 17 17 C 1.37877 * 119.99683 * 178.07946 * 15 13 12 18 18 N 1.31519 * 119.99375 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00220 * 359.97438 * 17 15 13 20 20 H 1.48499 * 109.47007 * 90.00544 * 19 17 15 21 21 H 1.48500 * 109.47115 * 209.99966 * 19 17 15 22 22 H 1.48496 * 109.47096 * 330.00048 * 19 17 15 23 23 C 1.47930 * 134.49981 * 0.03761 * 11 9 8 24 24 H 1.09005 * 109.47036 * 270.13444 * 1 2 3 25 25 H 1.08997 * 109.47307 * 30.13505 * 1 2 3 26 26 H 1.08997 * 109.46966 * 150.13987 * 1 2 3 27 27 H 0.96700 * 114.00056 * 269.98084 * 5 4 3 28 28 H 1.09007 * 113.76850 * 90.36997 * 12 11 9 29 29 H 1.08994 * 113.87568 * 318.97975 * 12 11 9 30 30 H 0.96696 * 114.00036 * 181.92461 * 14 13 12 31 31 H 0.97000 * 119.99411 * 179.97438 * 18 17 15 32 32 H 1.09003 * 113.86941 * 41.06551 * 23 11 9 33 33 H 1.09003 * 113.76390 * 269.57872 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0063 5 8 4.6149 1.5465 -0.0126 6 7 3.6182 -0.6384 -0.0049 7 1 4.4243 -1.1779 -0.0089 8 6 2.3110 -1.1057 0.0026 9 6 1.8793 -2.5044 0.0065 10 8 0.6924 -2.7751 0.0129 11 7 2.7958 -3.4926 0.0028 12 6 2.7273 -4.9668 0.0052 13 6 4.1300 -4.9266 0.6383 14 8 4.1158 -4.9015 2.0671 15 6 5.0782 -5.9553 0.0782 16 1 4.7369 -6.6517 -0.6733 17 6 6.3814 -6.0074 0.5253 18 7 7.2090 -6.9048 0.0361 19 14 6.9719 -4.8023 1.8247 20 1 6.7478 -5.3804 3.1741 21 1 8.4208 -4.5388 1.6336 22 1 6.2166 -3.5299 1.6995 23 6 4.2745 -3.5354 -0.0042 24 1 -0.3633 0.0024 1.0277 25 1 -0.3634 0.8887 -0.5159 26 1 -0.3633 -0.8912 -0.5116 27 1 4.9194 1.7889 -0.8978 28 1 2.7077 -5.4074 -0.9916 29 1 1.9593 -5.3716 0.6642 30 1 4.9940 -4.8465 2.4682 31 1 8.1260 -6.9412 0.3504 32 1 4.7402 -2.7965 0.6479 33 1 4.7086 -3.5561 -1.0039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118314310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:07 Heat of formation + Delta-G solvation = -38.644692 kcal Electronic energy + Delta-G solvation = -20647.300968 eV Core-core repulsion = 17289.548091 eV Total energy + Delta-G solvation = -3357.752877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.43537 -41.30816 -39.32110 -38.37981 -36.36277 -34.60028 -34.44832 -31.99528 -30.77372 -28.41157 -27.44003 -26.87361 -23.90018 -22.54127 -21.54724 -20.91754 -19.87420 -19.42448 -18.60942 -18.12461 -17.61035 -17.07205 -16.93222 -16.40931 -15.54822 -15.50727 -15.18352 -14.75091 -14.55558 -14.34549 -14.10521 -13.87986 -13.65090 -13.38989 -13.08975 -13.03986 -12.73824 -12.49590 -12.00713 -11.67217 -11.43725 -11.25049 -11.13230 -10.92260 -10.60020 -9.93330 -9.47142 -8.45789 -6.58868 0.00183 1.19396 1.23440 1.26019 1.36579 1.48682 1.67428 2.11538 2.13311 2.71199 2.73295 3.13796 3.40548 3.68490 3.74783 3.96152 4.20708 4.27314 4.37736 4.49536 4.61204 4.72896 4.81577 4.84185 4.92706 4.96424 5.23417 5.42191 5.68476 6.00841 6.46818 6.51761 6.56666 6.60702 6.64063 6.92246 7.09537 8.69326 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.006517 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.874357 B = 4295.262262 C = 5133.792277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.105 3.895 3 N -0.510 5.510 4 C 0.423 3.577 5 O -0.439 6.439 6 N -0.549 5.549 7 H 0.429 0.571 8 C -0.092 4.092 9 C 0.610 3.390 10 O -0.560 6.560 11 N -0.635 5.635 12 C 0.131 3.869 13 C 0.188 3.812 14 O -0.560 6.560 15 C -0.543 4.543 16 H 0.060 0.940 17 C 0.031 3.969 18 N -0.920 5.920 19 Si 0.915 3.085 20 H -0.260 1.260 21 H -0.281 1.281 22 H -0.231 1.231 23 C 0.065 3.935 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.433 0.567 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.357 0.643 31 H 0.274 0.726 32 H 0.079 0.921 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 14.272 -1.385 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.030 4.030 3 N -0.242 5.242 4 C 0.121 3.879 5 O -0.244 6.244 6 N -0.170 5.170 7 H 0.272 0.728 8 C -0.207 4.207 9 C 0.401 3.599 10 O -0.440 6.440 11 N -0.369 5.369 12 C 0.009 3.991 13 C 0.147 3.853 14 O -0.372 6.372 15 C -0.580 4.580 16 H 0.078 0.922 17 C -0.170 4.170 18 N -0.557 5.557 19 Si 0.740 3.260 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.155 1.155 23 C -0.058 4.058 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.295 0.705 28 H 0.127 0.873 29 H 0.095 0.905 30 H 0.209 0.791 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.451 15.006 -0.901 15.678 hybrid contribution 2.256 -0.991 0.077 2.465 sum -2.196 14.015 -0.825 14.210 Atomic orbital electron populations 1.20343 0.84818 1.04138 1.03769 1.21278 0.97789 0.85689 0.98219 1.70289 0.99273 1.30309 1.24319 1.20282 0.87762 0.78925 1.00974 1.84804 1.42144 1.60680 1.36779 1.43988 1.08788 1.08134 1.56066 0.72755 1.20616 0.84022 0.94276 1.21798 1.16522 0.84580 0.82398 0.76434 1.90775 1.16265 1.83182 1.53814 1.50048 1.07925 1.07353 1.71534 1.23309 0.96505 0.78109 1.01159 1.20545 0.94376 0.91752 0.78615 1.86488 1.32969 1.96821 1.20884 1.21312 0.95020 1.17346 1.24362 0.92155 1.25783 0.96641 0.96717 0.97899 1.69990 1.06589 1.35396 1.43757 0.86402 0.78764 0.80875 0.79966 1.18619 1.20685 1.15538 1.24723 0.78662 0.99619 1.02779 0.89959 0.89059 0.89992 0.70460 0.87283 0.90494 0.79114 0.91652 0.90299 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 9.87 71.24 0.70 -1.16 16 2 C 0.11 3.16 7.14 41.99 0.30 3.46 16 3 N -0.51 -14.71 11.22 -301.67 -3.39 -18.10 16 4 C 0.42 10.48 9.43 179.99 1.70 12.18 16 5 O -0.44 -7.68 13.62 -84.81 -1.16 -8.83 16 6 N -0.55 -14.34 5.99 -300.14 -1.80 -16.14 16 7 H 0.43 9.91 5.96 -92.71 -0.55 9.36 16 8 C -0.09 -2.93 7.02 39.80 0.28 -2.65 16 9 C 0.61 22.31 8.01 86.36 0.69 23.01 16 10 O -0.56 -22.71 15.53 -4.47 -0.07 -22.78 16 11 N -0.64 -23.02 3.62 -844.39 -3.05 -26.07 16 12 C 0.13 5.01 8.23 86.49 0.71 5.72 16 13 C 0.19 7.80 1.05 -10.89 -0.01 7.78 16 14 O -0.56 -24.13 13.35 -148.98 -1.99 -26.12 16 15 C -0.54 -26.52 9.20 25.60 0.24 -26.29 16 16 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 17 C 0.03 1.55 5.47 84.65 0.46 2.02 16 18 N -0.92 -50.07 13.96 21.45 0.30 -49.77 16 19 Si 0.92 35.51 24.31 68.60 1.67 37.17 16 20 H -0.26 -9.91 7.05 99.48 0.70 -9.21 16 21 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 22 H -0.23 -7.74 5.16 99.48 0.51 -7.23 16 23 C 0.06 2.22 5.91 86.41 0.51 2.73 16 24 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.08 2.27 6.47 -2.39 -0.02 2.26 16 27 H 0.43 2.48 9.06 -74.06 -0.67 1.81 16 28 H 0.11 3.88 8.09 -2.38 -0.02 3.86 16 29 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.36 14.34 3.57 -74.06 -0.26 14.08 16 31 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.08 2.43 5.23 -2.39 -0.01 2.42 16 33 H 0.12 3.59 8.09 -2.39 -0.02 3.57 16 Total: -1.00 -65.50 279.49 -4.39 -69.89 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.49 Total: 33.94 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 5.58 Total: 26.80 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -7.94 Total: -110.08 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -3.21 Total: -57.73 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 1.67 Total: 37.17 kcal Total: -65.50 -4.39 -69.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118314310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.241 kcal (2) G-P(sol) polarization free energy of solvation -65.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds