Wall clock time and date at job start Mon Mar 30 2020 00:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00293 * 2 1 4 4 H 1.48496 * 109.47575 * 270.00404 * 3 2 1 5 5 H 1.48511 * 109.47006 * 30.00511 * 3 2 1 6 6 H 1.48505 * 109.46976 * 149.99732 * 3 2 1 7 7 C 1.38953 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99565 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00527 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99863 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46956 * 180.02562 * 12 10 9 14 14 C 1.34773 * 119.99715 * 180.02562 * 13 12 10 15 15 O 1.21285 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00084 * 179.97438 * 14 13 12 17 17 C 1.52991 * 109.47347 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47347 * 179.97438 * 17 16 14 19 19 C 1.41379 * 126.80093 * 124.70715 * 18 17 16 20 20 C 1.35446 * 103.98652 * 180.26598 * 19 18 17 21 21 O 1.34044 * 106.44743 * 0.02562 * 20 19 18 22 22 N 1.20918 * 111.56370 * 359.97438 * 21 20 19 23 23 H 0.96998 * 119.99961 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00392 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.46587 * 59.99897 * 12 10 9 26 26 H 1.08997 * 109.46911 * 300.00412 * 12 10 9 27 27 H 0.96998 * 120.00289 * 0.02562 * 13 12 10 28 28 H 1.09006 * 109.46736 * 59.99884 * 16 14 13 29 29 H 1.08999 * 109.47100 * 300.00702 * 16 14 13 30 30 H 1.09006 * 109.47345 * 60.00198 * 17 16 14 31 31 H 1.08999 * 109.47545 * 300.00371 * 17 16 14 32 32 H 1.08001 * 128.00721 * 0.25149 * 19 18 17 33 33 H 1.08004 * 126.77907 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4400 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1955 -5.9766 0.0005 14 6 1.7462 -7.2472 0.0006 15 8 0.5538 -7.4688 -0.0003 16 6 2.7254 -8.3927 0.0005 17 6 1.9604 -9.7176 -0.0001 18 6 2.9396 -10.8632 -0.0008 19 6 3.0001 -11.9262 0.9293 20 6 4.0424 -12.6774 0.5005 21 8 4.5246 -12.0690 -0.5922 22 7 3.9012 -11.0666 -0.8543 23 1 -0.4850 0.8400 0.0004 24 1 0.3533 -2.3906 -0.0005 25 1 0.6165 -4.9208 -0.8897 26 1 0.6172 -4.9205 0.8902 27 1 3.1492 -5.7994 0.0008 28 1 3.3522 -8.3349 0.8905 29 1 3.3521 -8.3349 -0.8894 30 1 1.3340 -9.7751 -0.8903 31 1 1.3335 -9.7756 0.8897 32 1 2.3629 -12.0991 1.7840 33 1 4.4126 -13.5867 0.9507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140177763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:28 Heat of formation + Delta-G solvation = -22.992546 kcal Electronic energy + Delta-G solvation = -18813.545948 eV Core-core repulsion = 15456.471799 eV Total energy + Delta-G solvation = -3357.074149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.17079 -39.66600 -38.17162 -35.53526 -34.46198 -33.68282 -32.40182 -31.46375 -31.30699 -28.02490 -25.47656 -24.13656 -23.38539 -21.10461 -20.06941 -19.54538 -18.17381 -18.06931 -17.76331 -17.02361 -15.86270 -15.66661 -15.47040 -15.04160 -14.54378 -14.46178 -14.03495 -13.69491 -13.49464 -13.25013 -12.62492 -12.44067 -12.17788 -12.03308 -11.71981 -11.64400 -11.16531 -11.13031 -10.46952 -10.33329 -10.29631 -9.92700 -9.70955 -9.65130 -8.82551 -8.65214 -8.11761 -6.52925 -3.95010 1.25216 1.97652 2.78525 3.01600 3.10888 3.20974 3.25216 3.35134 3.72331 3.95494 4.10265 4.30264 4.75989 4.85927 4.89402 4.95581 5.01281 5.15472 5.19301 5.36825 5.45183 5.69831 5.78344 5.89356 5.93982 5.94996 6.05596 6.65223 7.44733 7.76947 7.90513 8.03574 8.39536 8.44541 9.03106 9.37596 9.85466 10.63972 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.058603 B = 0.002704 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.675224 B =10354.157944 C =10702.203248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.427 3.573 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.513 3.487 15 O -0.552 6.552 16 C -0.135 4.135 17 C -0.025 4.025 18 C 0.019 3.981 19 C -0.231 4.231 20 C -0.063 4.063 21 O 0.098 5.902 22 N -0.362 5.362 23 H 0.274 0.726 24 H 0.396 0.604 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.412 0.588 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.172 0.828 33 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 -21.372 2.464 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.361 5.361 14 C 0.299 3.701 15 O -0.430 6.430 16 C -0.175 4.175 17 C -0.063 4.063 18 C -0.140 4.140 19 C -0.252 4.252 20 C -0.144 4.144 21 O 0.031 5.969 22 N -0.066 5.066 23 H 0.084 0.916 24 H 0.230 0.770 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.250 0.750 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.190 0.810 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.253 -20.656 1.379 21.134 hybrid contribution -0.227 0.631 0.829 1.066 sum 4.026 -20.025 2.208 20.545 Atomic orbital electron populations 1.69616 1.06021 1.28553 1.49292 1.25335 0.95678 0.99965 0.96765 0.85805 0.79222 0.80442 0.78513 1.20240 1.20780 1.19307 1.19734 0.93468 0.82001 1.48271 0.87671 1.41801 1.09490 1.04490 1.62587 1.19757 0.88300 0.85015 0.85632 1.90499 1.13718 1.86827 1.57377 1.20963 0.91920 0.85829 1.03251 1.45734 1.11678 1.04712 1.73934 1.20475 0.89553 0.83864 0.76245 1.90690 1.16828 1.84962 1.50570 1.21579 0.98436 0.92271 1.05251 1.19734 0.93893 0.87356 1.05361 1.23748 0.97619 0.99418 0.93225 1.22804 1.02122 0.96494 1.03819 1.26034 0.96964 1.01149 0.90262 1.84855 1.46355 1.28049 1.37593 1.73861 1.08180 1.02026 1.22551 0.91568 0.77023 0.89817 0.89820 0.75035 0.88652 0.88271 0.88941 0.88656 0.81045 0.76784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 13.05 55.50 0.72 -23.19 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.65 5.29 -10.96 -0.06 -13.70 16 10 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 11 O -0.60 -15.35 15.24 5.54 0.08 -15.26 16 12 C 0.11 1.99 6.15 -5.19 -0.03 1.96 16 13 N -0.71 -11.65 5.53 -61.47 -0.34 -11.99 16 14 C 0.51 7.78 7.83 -10.99 -0.09 7.70 16 15 O -0.55 -9.90 15.98 5.55 0.09 -9.81 16 16 C -0.13 -1.55 5.67 -27.89 -0.16 -1.71 16 17 C -0.03 -0.27 5.10 -27.89 -0.14 -0.41 16 18 C 0.02 0.20 6.59 -82.10 -0.54 -0.35 16 19 C -0.23 -1.75 11.12 -39.38 -0.44 -2.19 16 20 C -0.06 -0.39 12.30 29.74 0.37 -0.03 16 21 O 0.10 0.95 11.20 17.17 0.19 1.14 16 22 N -0.36 -4.25 12.06 33.42 0.40 -3.85 16 23 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 25 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.41 6.69 7.44 -40.82 -0.30 6.39 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.22 0.35 8.06 -52.48 -0.42 -0.08 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -32.71 302.69 -4.24 -36.95 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -3.51 Total: 12.80 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -1.36 Total: 6.82 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.73 Total: -52.73 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.37 Total: -23.93 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.71 -4.24 -36.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140177763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.958 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds