Wall clock time and date at job start Mon Mar 30 2020 00:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86793 * 120.00293 * 2 1 4 4 H 1.48496 * 109.47575 * 270.00404 * 3 2 1 5 5 H 1.48511 * 109.47006 * 30.00511 * 3 2 1 6 6 H 1.48505 * 109.46976 * 149.99732 * 3 2 1 7 7 C 1.38953 * 119.99692 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00226 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99565 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00527 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99863 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.46956 * 180.02562 * 12 10 9 14 14 C 1.34773 * 119.99715 * 180.02562 * 13 12 10 15 15 O 1.21285 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00084 * 179.97438 * 14 13 12 17 17 C 1.52991 * 109.47347 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.47347 * 179.97438 * 17 16 14 19 19 C 1.41379 * 126.80093 * 124.70715 * 18 17 16 20 20 C 1.35446 * 103.98652 * 180.26598 * 19 18 17 21 21 O 1.34044 * 106.44743 * 0.02562 * 20 19 18 22 22 N 1.20918 * 111.56370 * 359.97438 * 21 20 19 23 23 H 0.96998 * 119.99961 * 359.97438 * 1 2 3 24 24 H 0.96995 * 120.00392 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.46587 * 59.99897 * 12 10 9 26 26 H 1.08997 * 109.46911 * 300.00412 * 12 10 9 27 27 H 0.96998 * 120.00289 * 0.02562 * 13 12 10 28 28 H 1.09006 * 109.46736 * 59.99884 * 16 14 13 29 29 H 1.08999 * 109.47100 * 300.00702 * 16 14 13 30 30 H 1.09006 * 109.47345 * 60.00198 * 17 16 14 31 31 H 1.08999 * 109.47545 * 300.00371 * 17 16 14 32 32 H 1.08001 * 128.00721 * 0.25149 * 19 18 17 33 33 H 1.08004 * 126.77907 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4400 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2435 -4.8630 0.0000 13 7 2.1955 -5.9766 0.0005 14 6 1.7462 -7.2472 0.0006 15 8 0.5538 -7.4688 -0.0003 16 6 2.7254 -8.3927 0.0005 17 6 1.9604 -9.7176 -0.0001 18 6 2.9396 -10.8632 -0.0008 19 6 3.0001 -11.9262 0.9293 20 6 4.0424 -12.6774 0.5005 21 8 4.5246 -12.0690 -0.5922 22 7 3.9012 -11.0666 -0.8543 23 1 -0.4850 0.8400 0.0004 24 1 0.3533 -2.3906 -0.0005 25 1 0.6165 -4.9208 -0.8897 26 1 0.6172 -4.9205 0.8902 27 1 3.1492 -5.7994 0.0008 28 1 3.3522 -8.3349 0.8905 29 1 3.3521 -8.3349 -0.8894 30 1 1.3340 -9.7751 -0.8903 31 1 1.3335 -9.7756 0.8897 32 1 2.3629 -12.0991 1.7840 33 1 4.4126 -13.5867 0.9507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140177763.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:27 Heat of formation + Delta-G solvation = -47.680505 kcal Electronic energy + Delta-G solvation = -18814.616499 eV Core-core repulsion = 15456.471799 eV Total energy + Delta-G solvation = -3358.144699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.85185 -41.05850 -39.94388 -36.42264 -36.17909 -35.29748 -33.41181 -33.09360 -32.17816 -29.51808 -26.94693 -25.61168 -24.02252 -21.94608 -21.41206 -21.13298 -20.07734 -18.92429 -18.49493 -18.26694 -17.27087 -17.05673 -16.99361 -16.34831 -16.07912 -15.70785 -15.64369 -14.90020 -14.67800 -14.14014 -13.98625 -13.61643 -13.55274 -13.35869 -13.29759 -12.92055 -12.60468 -12.47545 -12.13449 -11.96013 -11.58798 -11.14513 -10.88300 -10.58454 -10.50493 -10.22457 -10.10028 -8.52770 -6.03157 0.68041 1.31626 1.35226 1.41982 1.54579 1.55234 1.89149 2.02413 2.30883 2.54458 3.10180 3.14337 3.24140 3.60554 3.76535 4.06126 4.16650 4.24418 4.33337 4.41515 4.42111 4.54516 4.64828 4.74968 4.93901 5.06286 5.21276 5.27237 5.36921 5.89976 6.43121 6.50255 7.01669 7.12394 7.40931 7.42298 7.92496 8.64158 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.058603 B = 0.002704 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.675224 B =10354.157944 C =10702.203248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.431 3.569 11 O -0.625 6.625 12 C 0.120 3.880 13 N -0.710 5.710 14 C 0.516 3.484 15 O -0.578 6.578 16 C -0.124 4.124 17 C -0.020 4.020 18 C 0.002 3.998 19 C -0.241 4.241 20 C -0.044 4.044 21 O 0.086 5.914 22 N -0.399 5.399 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.414 0.586 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.195 0.805 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.413 -22.498 3.221 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.008 4.008 13 N -0.363 5.363 14 C 0.304 3.696 15 O -0.458 6.458 16 C -0.164 4.164 17 C -0.059 4.059 18 C -0.156 4.156 19 C -0.263 4.263 20 C -0.125 4.125 21 O 0.021 5.979 22 N -0.105 5.105 23 H 0.090 0.910 24 H 0.233 0.767 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.252 0.748 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.213 0.787 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.651 -21.806 2.133 22.398 hybrid contribution -0.346 0.862 0.612 1.112 sum 4.305 -20.944 2.745 21.557 Atomic orbital electron populations 1.69679 1.07007 1.29681 1.49231 1.26142 0.96556 1.02715 0.95740 0.84862 0.77918 0.76443 0.78729 1.19563 1.19561 1.19443 1.19736 0.92956 0.83571 1.50464 0.89619 1.41855 1.09609 1.04637 1.63389 1.20464 0.88132 0.85984 0.83558 1.90476 1.15224 1.87560 1.58067 1.20789 0.91766 0.83938 1.04276 1.45785 1.11412 1.04746 1.74393 1.21045 0.89746 0.83903 0.74876 1.90678 1.18237 1.85229 1.51701 1.21547 0.97640 0.90980 1.06210 1.19645 0.93915 0.87222 1.05082 1.23859 0.97519 1.00109 0.94145 1.23148 1.03094 0.95786 1.04225 1.26909 0.95694 1.01506 0.88364 1.84802 1.46413 1.27816 1.38858 1.73863 1.09298 1.03416 1.23901 0.91025 0.76671 0.88862 0.88589 0.74818 0.86807 0.88006 0.90283 0.87932 0.78747 0.72202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.72 13.05 21.66 0.28 -48.44 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.34 -18.68 9.68 84.04 0.81 -17.87 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.19 5.29 -306.97 -1.62 -29.81 16 10 C 0.43 19.96 7.85 87.66 0.69 20.65 16 11 O -0.63 -32.46 15.24 -3.08 -0.05 -32.51 16 12 C 0.12 4.36 6.15 85.64 0.53 4.89 16 13 N -0.71 -22.92 5.53 -466.77 -2.58 -25.50 16 14 C 0.52 15.25 7.83 87.66 0.69 15.94 16 15 O -0.58 -20.33 15.98 -3.04 -0.05 -20.38 16 16 C -0.12 -2.72 5.67 29.85 0.17 -2.55 16 17 C -0.02 -0.42 5.10 29.85 0.15 -0.27 16 18 C 0.00 0.03 6.59 43.58 0.29 0.32 16 19 C -0.24 -3.08 11.12 22.40 0.25 -2.83 16 20 C -0.04 -0.42 12.30 67.17 0.83 0.40 16 21 O 0.09 1.54 11.20 71.60 0.80 2.35 16 22 N -0.40 -9.09 12.06 -49.55 -0.60 -9.69 16 23 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 24 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 25 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 26 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.41 13.25 7.44 -92.71 -0.69 12.56 16 28 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 1.82 8.10 -2.38 -0.02 1.80 16 31 H 0.10 1.93 8.09 -2.39 -0.02 1.91 16 32 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.26 -0.34 8.06 -2.91 -0.02 -0.36 16 Total: -1.00 -70.58 302.69 2.83 -67.76 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.26 Total: 33.81 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 4.87 Total: 18.59 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -4.52 Total: -113.44 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: 0.71 Total: -50.55 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -70.58 2.83 -67.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140177763.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.075 kcal (2) G-P(sol) polarization free energy of solvation -70.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds