Wall clock time and date at job start Mon Mar 30 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46992 * 179.97438 * 5 3 2 7 7 C 1.35815 * 126.05152 * 124.99881 * 6 5 3 8 8 C 1.35761 * 107.56531 * 179.97438 * 7 6 5 9 9 N 1.40759 * 126.08157 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99754 * 179.97438 * 9 8 7 11 11 O 1.21304 * 119.99862 * 359.97438 * 10 9 8 12 12 C 1.50698 * 119.99655 * 179.97438 * 10 9 8 13 13 C 1.50700 * 109.46926 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00038 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00023 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00101 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47250 * 59.99978 * 17 15 13 19 19 H 1.48504 * 109.47120 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47004 * 299.99577 * 17 15 13 21 21 C 1.40256 * 107.83472 * 0.02562 * 8 7 6 22 22 N 1.30835 * 108.33822 * 359.75231 * 21 8 7 23 23 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 25 25 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 27 27 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 28 28 H 1.07999 * 126.22073 * 359.94688 * 7 6 5 29 29 H 0.96996 * 119.99994 * 359.97438 * 9 8 7 30 30 H 1.09000 * 109.47480 * 300.00088 * 12 10 9 31 31 H 1.08996 * 109.47356 * 60.00338 * 12 10 9 32 32 H 0.96999 * 119.99970 * 179.97438 * 16 15 13 33 33 H 1.08005 * 125.83005 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.8125 3.2679 0.8979 8 6 4.9411 4.5724 0.5446 9 7 5.7151 5.5398 1.2127 10 6 5.7551 6.8060 0.7527 11 8 5.1245 7.1118 -0.2374 12 6 6.5833 7.8418 1.4683 13 6 6.4568 9.1647 0.7577 14 1 5.8388 9.2470 -0.1242 15 6 7.1308 10.2697 1.2328 16 7 7.8837 10.1694 2.3064 17 14 6.9745 11.9094 0.3514 18 1 5.5514 12.3333 0.3433 19 1 7.7915 12.9299 1.0560 20 1 7.4570 11.7682 -1.0458 21 6 4.1645 4.7850 -0.6039 22 7 3.5961 3.6531 -0.9317 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 3.9563 0.7806 0.8892 27 1 3.9557 0.7809 -0.8908 28 1 5.2848 2.7857 1.7410 29 1 6.2196 5.2952 2.0042 30 1 6.2289 7.9454 2.4939 31 1 7.6279 7.5309 1.4746 32 1 8.3582 10.9467 2.6404 33 1 4.0573 5.7220 -1.1300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:17 Heat of formation + Delta-G solvation = -60.016818 kcal Electronic energy + Delta-G solvation = -19248.948541 eV Core-core repulsion = 15890.268899 eV Total energy + Delta-G solvation = -3358.679642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.42008 -41.39764 -40.18616 -37.63971 -35.73271 -35.08334 -34.11568 -31.36133 -30.53361 -29.18273 -27.49487 -25.66186 -23.38363 -22.38417 -21.91358 -20.77400 -18.87496 -18.73157 -18.30149 -17.84383 -17.62756 -17.19150 -16.61795 -16.28326 -16.24438 -15.58637 -15.05960 -14.70389 -14.57757 -14.34038 -14.16991 -13.77604 -13.46556 -13.22860 -13.03468 -12.79317 -12.58952 -12.01521 -11.97719 -11.87143 -11.70630 -11.60455 -11.44682 -10.60064 -10.49474 -10.41031 -8.67440 -8.23511 -6.29745 0.65780 1.05182 1.22033 1.42154 1.44473 1.50203 1.53118 1.83000 2.27931 2.34336 2.52627 3.12543 3.63645 3.72087 3.93356 4.17631 4.18628 4.27850 4.28912 4.36649 4.61946 4.67649 4.70303 5.11316 5.22745 5.25990 5.29430 5.73019 5.80394 6.03311 6.07853 6.54985 6.62991 6.76265 6.87074 7.35783 7.51808 8.88386 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.054620 B = 0.003170 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.511303 B = 8831.559986 C = 9078.901158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.442 3.558 4 O -0.529 6.529 5 C 0.151 3.849 6 N -0.373 5.373 7 C 0.045 3.955 8 C -0.014 4.014 9 N -0.639 5.639 10 C 0.517 3.483 11 O -0.568 6.568 12 C 0.014 3.986 13 C -0.537 4.537 14 H 0.055 0.945 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.961 3.039 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.273 1.273 21 C 0.026 3.974 22 N -0.299 5.299 23 H 0.139 0.861 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.194 0.806 27 H 0.155 0.845 28 H 0.238 0.762 29 H 0.426 0.574 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.267 0.733 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -25.769 0.975 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.284 3.716 4 O -0.417 6.417 5 C 0.030 3.970 6 N -0.160 5.160 7 C -0.101 4.101 8 C -0.118 4.118 9 N -0.286 5.286 10 C 0.307 3.693 11 O -0.446 6.446 12 C -0.025 4.025 13 C -0.576 4.576 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.786 3.214 18 H -0.200 1.200 19 H -0.199 1.199 20 H -0.198 1.198 21 C -0.162 4.162 22 N -0.121 5.121 23 H 0.157 0.843 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.211 0.789 27 H 0.172 0.828 28 H 0.254 0.746 29 H 0.264 0.736 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.502 -25.848 -0.405 27.213 hybrid contribution 0.319 1.720 0.446 1.806 sum -8.182 -24.127 0.041 25.477 Atomic orbital electron populations 1.23528 0.74748 1.05853 1.02111 1.86460 1.24849 1.31694 1.83863 1.24375 0.93209 0.81654 0.72335 1.90799 1.67692 1.37919 1.45275 1.21503 0.86655 0.77226 1.11663 1.48055 1.37505 1.08864 1.21544 1.22553 0.98340 0.91149 0.98106 1.18136 1.04034 0.90784 0.98886 1.42923 1.47710 1.07249 1.30735 1.21656 0.80871 0.82712 0.84037 1.90425 1.45537 1.80619 1.28049 1.19044 0.95463 0.91570 0.96454 1.21350 1.29032 0.94558 1.12611 0.92649 1.25728 0.94629 1.02505 0.95808 1.70006 1.30925 1.31751 1.23620 0.85555 0.78257 0.78810 0.78732 1.19994 1.19884 1.19838 1.24331 0.96920 0.97422 0.97495 1.77363 1.22431 0.97454 1.14833 0.84300 0.92340 0.92775 0.78858 0.82751 0.74625 0.73624 0.93456 0.93232 0.92374 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.35 -5.15 10.56 -51.41 -0.54 -5.70 16 3 C 0.44 8.61 7.99 71.24 0.57 9.18 16 4 O -0.53 -16.34 15.47 21.97 0.34 -16.00 16 5 C 0.15 1.79 7.11 85.63 0.61 2.40 16 6 N -0.37 -8.79 3.42 -350.71 -1.20 -9.99 16 7 C 0.04 0.95 11.52 83.50 0.96 1.92 16 8 C -0.01 -0.47 6.90 37.62 0.26 -0.21 16 9 N -0.64 -21.68 5.47 -304.04 -1.66 -23.34 16 10 C 0.52 23.68 7.79 87.66 0.68 24.36 16 11 O -0.57 -30.09 12.62 -3.11 -0.04 -30.12 16 12 C 0.01 0.72 5.46 29.10 0.16 0.88 16 13 C -0.54 -31.55 8.92 25.60 0.23 -31.32 16 14 H 0.06 3.43 6.75 -2.91 -0.02 3.41 16 15 C 0.01 0.69 5.46 84.65 0.46 1.15 16 16 N -0.92 -53.59 13.29 21.45 0.28 -53.30 16 17 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 18 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 21 C 0.03 1.00 10.84 85.33 0.92 1.93 16 22 N -0.30 -10.51 11.65 -56.76 -0.66 -11.17 16 23 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 25 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 26 H 0.19 0.11 8.07 -2.39 -0.02 0.09 16 27 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.24 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.43 10.75 8.83 -92.71 -0.82 9.93 16 30 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.18 7.91 5.92 -2.91 -0.02 7.89 16 Total: -1.00 -85.80 300.65 4.93 -80.86 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.34 Total: 9.30 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 6.05 Total: 11.86 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -3.24 Total: -97.80 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -0.24 Total: -51.82 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -85.80 4.93 -80.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.846 kcal (2) G-P(sol) polarization free energy of solvation -85.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds