Wall clock time and date at job start Mon Mar 30 2020 01:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45198 * 109.47285 * 2 1 4 4 C 1.34826 * 117.00245 * 180.02562 * 3 2 1 5 5 O 1.21542 * 119.99926 * 359.97438 * 4 3 2 6 6 C 1.47161 * 120.00203 * 179.97438 * 4 3 2 7 7 N 1.31784 * 125.78238 * 0.33249 * 6 4 3 8 8 C 1.33287 * 109.21649 * 180.14717 * 7 6 4 9 9 N 1.40312 * 125.87731 * 179.82310 * 8 7 6 10 10 C 1.34773 * 120.00145 * 179.69408 * 9 8 7 11 11 O 1.21303 * 120.00079 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00046 * 179.72958 * 10 9 8 13 13 C 1.50703 * 109.47148 * 180.28037 * 12 10 9 14 14 H 1.08001 * 120.00037 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00214 * 179.97438 * 13 12 10 16 16 N 1.31510 * 119.99683 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00201 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47136 * 90.00100 * 17 15 13 19 19 H 1.48496 * 109.47272 * 210.00361 * 17 15 13 20 20 H 1.48503 * 109.47010 * 330.00034 * 17 15 13 21 21 C 1.36251 * 108.24576 * 359.56814 * 8 7 6 22 22 N 1.36064 * 106.99501 * 0.26317 * 21 8 7 23 23 H 0.97008 * 126.44266 * 180.02562 * 22 21 8 24 24 H 1.09007 * 109.46939 * 299.99824 * 1 2 3 25 25 H 1.09003 * 109.47465 * 60.00026 * 1 2 3 26 26 H 1.08998 * 109.47071 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47087 * 239.99896 * 2 1 3 28 28 H 1.09003 * 109.47465 * 119.99974 * 2 1 3 29 29 H 0.97001 * 119.99741 * 359.70524 * 9 8 7 30 30 H 1.09003 * 109.47174 * 300.27142 * 12 10 9 31 31 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 32 32 H 0.97010 * 119.99929 * 180.02562 * 16 15 13 33 33 H 1.07998 * 126.50086 * 180.25434 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3506 1.5456 -0.0005 5 8 4.0910 0.5817 -0.0005 6 6 3.9131 2.9055 -0.0011 7 7 3.2198 4.0261 0.0050 8 6 4.0592 5.0614 -0.0011 9 7 3.6941 6.4162 -0.0009 10 6 4.6456 7.3706 -0.0012 11 8 5.8178 7.0584 -0.0021 12 6 4.2534 8.8257 -0.0072 13 6 5.4945 9.6805 -0.0133 14 1 6.4698 9.2165 -0.0125 15 6 5.3850 11.0549 -0.0200 16 7 4.1975 11.6198 -0.0205 17 14 6.9234 12.1144 -0.0268 18 1 7.3296 12.3883 -1.4286 19 1 6.6441 13.3971 0.6673 20 1 8.0196 11.4000 0.6757 21 6 5.3330 4.5778 -0.0017 22 7 5.2429 3.2201 -0.0018 23 1 5.9834 2.5935 -0.0018 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.7567 6.6658 -0.0004 30 1 3.6613 9.0387 -0.8973 31 1 3.6642 9.0469 0.8827 32 1 4.1204 12.5868 -0.0255 33 1 6.2418 5.1614 -0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:08 Heat of formation + Delta-G solvation = -63.058369 kcal Electronic energy + Delta-G solvation = -19163.535226 eV Core-core repulsion = 15804.723693 eV Total energy + Delta-G solvation = -3358.811534 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.105 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.31203 -40.36565 -38.83629 -36.88333 -34.35913 -33.03801 -32.48915 -31.85550 -29.81339 -28.40505 -24.90462 -23.99942 -22.94804 -21.65197 -20.95169 -19.45384 -18.90775 -17.76354 -16.94171 -16.64160 -16.50897 -15.55892 -15.47116 -15.13459 -14.43650 -14.38573 -13.90521 -13.84414 -13.73186 -13.09496 -12.94731 -12.26576 -12.17584 -11.91313 -11.52649 -11.14089 -10.92608 -10.84172 -10.83714 -10.65187 -10.39887 -10.03298 -9.65415 -9.36837 -8.95904 -8.50108 -7.76901 -6.12305 -4.12977 0.96512 1.92149 2.37050 2.98847 3.04796 3.31597 3.37379 3.42911 3.54891 3.72940 4.26431 4.43840 4.61920 4.64955 4.87032 4.93980 5.26409 5.31416 5.47601 5.57719 5.66165 5.72943 5.83895 6.03607 6.14746 6.92554 7.01098 7.13031 7.20839 7.29267 7.55960 7.89614 8.03157 8.30216 8.90545 8.97566 9.52300 10.99887 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.049215 B = 0.003224 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.798551 B = 8683.041323 C = 9226.067178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.328 6.328 4 C 0.570 3.430 5 O -0.513 6.513 6 C 0.147 3.853 7 N -0.434 5.434 8 C 0.237 3.763 9 N -0.649 5.649 10 C 0.523 3.477 11 O -0.531 6.531 12 C 0.011 3.989 13 C -0.512 4.512 14 H 0.077 0.923 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.903 3.097 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.014 4.014 22 N -0.518 5.518 23 H 0.432 0.568 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.415 0.585 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.263 0.737 33 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 -20.203 0.036 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.243 6.243 4 C 0.413 3.587 5 O -0.401 6.401 6 C -0.109 4.109 7 N -0.164 5.164 8 C 0.011 3.989 9 N -0.297 5.297 10 C 0.315 3.685 11 O -0.406 6.406 12 C -0.028 4.028 13 C -0.551 4.551 14 H 0.095 0.905 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.731 3.269 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.155 4.155 22 N -0.126 5.126 23 H 0.272 0.728 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.251 0.749 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.182 -20.503 0.048 21.148 hybrid contribution 1.357 0.290 -0.017 1.388 sum -3.825 -20.214 0.031 20.572 Atomic orbital electron populations 1.21812 0.92138 1.02995 1.04049 1.23155 0.95746 0.79438 1.02793 1.86668 1.21822 1.32419 1.83373 1.18864 0.81403 0.85755 0.72637 1.90899 1.60679 1.41189 1.47348 1.20547 0.81224 0.92099 1.17018 1.69944 1.32680 0.96014 1.17729 1.17867 0.89083 0.86067 1.05933 1.43489 1.11885 1.00365 1.73997 1.22364 0.84583 0.89057 0.72535 1.90379 1.19037 1.82604 1.48542 1.19265 0.99994 0.83406 1.00175 1.21114 0.92671 0.90422 1.50850 0.90510 1.25001 0.96445 0.98026 0.95038 1.69953 1.22442 1.10739 1.50620 0.86401 0.82948 0.79370 0.78196 1.20576 1.21243 1.19660 1.23813 1.01631 0.81159 1.08868 1.42980 1.07700 1.08255 1.53647 0.72814 0.91165 0.91159 0.90066 0.90937 0.90937 0.74910 0.92723 0.92725 0.92744 0.76477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.54 6.20 37.16 0.23 0.77 16 3 O -0.33 -4.07 10.22 -40.84 -0.42 -4.49 16 4 C 0.57 7.72 7.95 34.35 0.27 7.99 16 5 O -0.51 -7.18 16.89 -19.30 -0.33 -7.51 16 6 C 0.15 2.17 7.96 -154.50 -1.23 0.94 16 7 N -0.43 -7.20 11.26 -10.27 -0.12 -7.32 16 8 C 0.24 4.10 7.98 -154.01 -1.23 2.87 16 9 N -0.65 -11.48 5.46 -11.65 -0.06 -11.54 16 10 C 0.52 11.09 7.79 -10.99 -0.09 11.00 16 11 O -0.53 -12.18 12.59 5.54 0.07 -12.11 16 12 C 0.01 0.26 5.46 -29.03 -0.16 0.10 16 13 C -0.51 -14.07 8.92 -34.44 -0.31 -14.37 16 14 H 0.08 2.17 6.75 -52.49 -0.35 1.82 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -25.49 13.29 55.43 0.74 -24.76 16 17 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.01 -0.22 10.85 -16.39 -0.18 -0.40 16 22 N -0.52 -6.71 6.17 -10.51 -0.06 -6.78 16 23 H 0.43 4.17 8.96 -40.82 -0.37 3.80 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.41 6.38 8.82 -40.82 -0.36 6.02 16 30 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.22 3.51 5.85 -52.49 -0.31 3.20 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -32.07 301.27 -6.54 -38.61 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.48 Total: 5.23 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -2.40 Total: 9.77 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.49 Total: -50.39 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.67 Total: -24.11 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.07 -6.54 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.446 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds