Wall clock time and date at job start Mon Mar 30 2020 01:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86790 * 120.00127 * 2 1 4 4 H 1.48499 * 109.47093 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47386 * 299.99784 * 3 2 1 6 6 H 1.48501 * 109.47408 * 59.99717 * 3 2 1 7 7 C 1.38813 * 119.99526 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99642 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00627 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.64616 * 0.04765 * 9 7 2 11 11 C 1.54320 * 107.27199 * 181.02383 * 10 9 7 12 12 C 1.55158 * 102.94530 * 22.18445 * 11 10 9 13 13 H 1.09003 * 111.03236 * 82.59096 * 12 11 10 14 14 O 1.42899 * 111.00560 * 206.42684 * 12 11 10 15 15 C 1.42906 * 113.99569 * 203.65118 * 14 12 11 16 16 C 1.53001 * 109.46608 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.46684 * 179.97438 * 16 15 14 18 18 C 1.33387 * 125.20287 * 90.00357 * 17 16 15 19 19 C 1.38427 * 114.91991 * 179.75128 * 18 17 16 20 20 C 1.33381 * 114.92374 * 0.25034 * 19 18 17 21 21 S 1.75886 * 125.20508 * 270.13810 * 17 16 15 22 22 C 1.47419 * 125.65022 * 179.97438 * 9 7 2 23 23 H 0.96996 * 119.99961 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.87910 * 300.43432 * 10 9 7 25 25 H 1.08999 * 109.88750 * 61.44144 * 10 9 7 26 26 H 1.09002 * 110.71713 * 263.82448 * 11 10 9 27 27 H 1.08999 * 110.72601 * 140.55433 * 11 10 9 28 28 H 1.09004 * 109.46920 * 60.00270 * 15 14 12 29 29 H 1.08991 * 109.47031 * 299.99969 * 15 14 12 30 30 H 1.09004 * 109.47213 * 60.00507 * 16 15 14 31 31 H 1.08991 * 109.47280 * 300.00301 * 16 15 14 32 32 H 1.08002 * 122.54190 * 0.02679 * 18 17 16 33 33 H 1.08002 * 122.53882 * 180.27078 * 19 18 17 34 34 H 1.07994 * 125.20771 * 180.02562 * 20 19 18 35 35 H 1.09000 * 110.36868 * 37.07872 * 22 9 7 36 36 H 1.08998 * 110.46675 * 274.79510 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7101 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1376 -2.5328 0.0013 11 6 -0.4485 -4.0441 0.0291 12 6 0.8517 -4.6558 0.6145 13 1 0.8568 -4.5957 1.7028 14 8 1.0246 -6.0054 0.1779 15 6 1.8453 -6.7949 1.0412 16 6 1.9599 -8.2133 0.4792 17 6 2.8259 -9.0456 1.3893 18 6 2.3861 -9.7667 2.4217 19 6 3.3681 -10.4560 3.1121 20 6 4.6059 -10.2907 2.6436 21 16 4.5717 -9.2123 1.2545 22 6 1.9334 -3.7311 0.0017 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5578 -2.0516 0.8845 25 1 -0.5545 -2.0826 -0.8996 26 1 -0.6316 -4.4187 -0.9780 27 1 -1.2987 -4.2511 0.6791 28 1 1.3971 -6.8329 2.0341 29 1 2.8375 -6.3486 1.1073 30 1 2.4079 -8.1757 -0.5138 31 1 0.9675 -8.6592 0.4134 32 1 1.3424 -9.8128 2.6954 33 1 3.1486 -11.0807 3.9653 34 1 5.4934 -10.7493 3.0540 35 1 2.8330 -3.7404 0.6171 36 1 2.1675 -4.0436 -1.0159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224786064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:03 Heat of formation + Delta-G solvation = -8.546246 kcal Electronic energy + Delta-G solvation = -17485.080246 eV Core-core repulsion = 14674.925750 eV Total energy + Delta-G solvation = -2810.154496 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.103 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.98501 -38.86218 -37.60122 -34.49427 -33.50995 -31.10532 -29.20523 -28.41391 -26.37890 -25.03584 -23.12305 -22.07412 -21.82811 -20.12996 -18.99565 -18.20689 -17.71743 -16.72696 -16.52068 -16.36886 -15.92635 -15.57403 -14.94464 -14.37263 -14.16676 -13.87016 -13.78932 -13.64734 -13.35777 -13.22834 -12.95751 -12.80690 -12.61712 -12.39635 -12.00996 -11.99933 -11.98616 -11.76818 -11.60115 -11.44683 -10.74316 -10.49239 -9.58834 -9.40969 -8.94867 -7.87520 -5.24710 0.06299 0.71263 1.11672 1.45850 1.47258 1.57808 1.83636 2.44166 2.63429 3.31218 3.70343 3.80188 3.95226 3.98908 4.07839 4.15135 4.27306 4.27914 4.43751 4.55913 4.64353 4.69635 4.75264 4.89270 4.93944 4.95463 5.02676 5.10241 5.24991 5.39815 5.41796 5.60926 5.61453 5.71275 6.13598 6.29299 7.06785 7.72338 8.36945 9.23125 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.034509 B = 0.003390 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.181021 B = 8258.068259 C = 8790.845745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.185 3.815 11 C -0.124 4.124 12 C 0.092 3.908 13 H 0.076 0.924 14 O -0.383 6.383 15 C 0.065 3.935 16 C -0.040 4.040 17 C -0.186 4.186 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.214 4.214 21 S 0.072 5.928 22 C 0.114 3.886 23 H 0.249 0.751 24 H 0.020 0.980 25 H 0.012 0.988 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.185 0.815 35 H 0.042 0.958 36 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 -22.178 5.730 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.811 3.189 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.354 5.354 10 C 0.060 3.940 11 C -0.162 4.162 12 C 0.033 3.967 13 H 0.094 0.906 14 O -0.302 6.302 15 C -0.012 4.012 16 C -0.079 4.079 17 C -0.303 4.303 18 C -0.169 4.169 19 C -0.172 4.172 20 C -0.349 4.349 21 S 0.335 5.665 22 C -0.012 4.012 23 H 0.058 0.942 24 H 0.038 0.962 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.202 0.798 35 H 0.060 0.940 36 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 6.579 -21.495 4.595 22.943 hybrid contribution -0.570 0.755 0.987 1.367 sum 6.009 -20.739 5.582 22.302 Atomic orbital electron populations 1.70181 1.06318 1.25427 1.58002 1.25706 0.96721 1.01126 1.02267 0.84950 0.78100 0.79045 0.76844 1.19019 1.21788 1.21563 1.19511 0.91049 0.83573 1.43478 0.89992 1.44674 1.02629 1.00880 1.87241 1.20940 0.83682 0.91013 0.98358 1.22806 0.96683 0.94826 1.01863 1.23080 0.95347 0.80634 0.97655 0.90598 1.87826 1.70306 1.21389 1.50680 1.22601 0.94169 0.90914 0.93556 1.19897 0.99647 0.91298 0.97055 1.24345 0.96602 1.06162 1.03163 1.20481 1.02234 0.98642 0.95550 1.20476 0.91641 1.02443 1.02651 1.25956 1.02747 1.05123 1.01051 1.84536 1.04328 1.46374 1.31229 1.22075 0.95772 0.85510 0.97860 0.94200 0.96199 0.97001 0.90818 0.89130 0.92158 0.93844 0.90265 0.88073 0.82762 0.81974 0.79786 0.93979 0.95949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.94 10.31 21.65 0.22 -57.72 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 3 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 7 C -0.25 -14.31 10.28 84.03 0.86 -13.45 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 9 N -0.63 -33.70 3.39 -691.96 -2.35 -36.05 16 10 C 0.19 9.45 5.38 86.73 0.47 9.92 16 11 C -0.12 -4.78 6.69 31.78 0.21 -4.57 16 12 C 0.09 3.35 3.49 31.99 0.11 3.46 16 13 H 0.08 2.65 7.90 -2.39 -0.02 2.63 16 14 O -0.38 -12.25 10.15 -148.98 -1.51 -13.77 16 15 C 0.06 1.64 5.80 71.98 0.42 2.06 16 16 C -0.04 -0.83 6.08 29.85 0.18 -0.65 16 17 C -0.19 -3.66 5.76 24.59 0.14 -3.52 16 18 C -0.14 -2.36 10.05 21.22 0.21 -2.15 16 19 C -0.14 -2.11 10.18 21.22 0.22 -1.89 16 20 C -0.21 -3.25 11.23 66.72 0.75 -2.50 16 21 S 0.07 1.37 23.33 -56.49 -1.32 0.06 16 22 C 0.11 4.98 6.97 86.86 0.61 5.58 16 23 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.02 1.11 7.38 -2.38 -0.02 1.09 16 25 H 0.01 0.67 7.50 -2.39 -0.02 0.65 16 26 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.06 1.41 8.11 -2.38 -0.02 1.39 16 29 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.94 313.64 2.76 -64.18 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.05 Total: 5.97 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 4.64 Total: -11.01 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -2.13 Total: -93.77 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.51 Total: -13.77 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.32 Total: 0.06 kcal Total: -66.94 2.76 -64.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224786064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.629 kcal (2) G-P(sol) polarization free energy of solvation -66.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds