Wall clock time and date at job start Mon Mar 30 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47485 * 274.96426 * 3 2 1 5 5 H 1.48502 * 109.47242 * 34.96491 * 3 2 1 6 6 H 1.48504 * 109.47131 * 154.96516 * 3 2 1 7 7 C 1.38809 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99871 * 188.34543 * 7 2 1 9 9 N 1.36931 * 120.00058 * 8.62367 * 7 2 1 10 10 C 1.47428 * 125.64874 * 16.43995 * 9 7 2 11 11 C 1.55127 * 104.72344 * 155.82093 * 10 9 7 12 12 C 1.55159 * 101.48626 * 37.29616 * 11 10 9 13 13 H 1.08995 * 110.72160 * 82.69387 * 12 11 10 14 14 O 1.42898 * 110.87509 * 205.89984 * 12 11 10 15 15 C 1.35987 * 117.00188 * 201.69373 * 14 12 11 16 16 C 1.38565 * 120.05896 * 354.36501 * 15 14 12 17 17 C 1.38425 * 119.97765 * 179.97438 * 16 15 14 18 18 F 1.35095 * 119.95393 * 179.97438 * 17 16 15 19 19 C 1.38455 * 120.09539 * 0.02562 * 17 16 15 20 20 C 1.38254 * 120.11624 * 359.97438 * 19 17 16 21 21 C 1.38541 * 120.02387 * 359.78971 * 20 19 17 22 22 O 1.36037 * 120.04369 * 180.23011 * 21 20 19 23 23 C 1.47021 * 125.64983 * 196.75661 * 9 7 2 24 24 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.36657 * 274.74963 * 10 9 7 26 26 H 1.09000 * 110.36399 * 37.07107 * 10 9 7 27 27 H 1.09000 * 111.19266 * 279.19218 * 11 10 9 28 28 H 1.08997 * 110.94448 * 155.28923 * 11 10 9 29 29 H 1.07999 * 120.01537 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.93948 * 180.02562 * 19 17 16 31 31 H 1.08004 * 119.98214 * 180.02562 * 20 19 17 32 32 H 0.96702 * 114.00411 * 270.22835 * 22 21 20 33 33 H 1.09003 * 109.87944 * 300.43301 * 23 9 7 34 34 H 1.08993 * 109.88260 * 61.44382 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3927 2.1071 -1.3948 5 1 1.5039 2.6201 0.8024 6 1 3.5962 1.4122 0.5925 7 6 2.0102 -1.2021 -0.0005 8 1 3.0817 -1.2071 0.1352 9 7 1.3372 -2.3812 -0.1789 10 6 -0.0305 -2.5177 -0.7119 11 6 -0.0871 -3.9567 -1.2886 12 6 0.7637 -4.7383 -0.2529 13 1 0.1622 -5.0084 0.6151 14 8 1.3443 -5.9020 -0.8452 15 6 1.7207 -6.9010 -0.0029 16 6 1.6438 -6.7186 1.3685 17 6 2.0270 -7.7369 2.2243 18 9 1.9523 -7.5583 3.5613 19 6 2.4876 -8.9379 1.7120 20 6 2.5659 -9.1242 0.3443 21 6 2.1791 -8.1101 -0.5167 22 8 2.2516 -8.2946 -1.8626 23 6 1.8565 -3.7202 0.1356 24 1 -0.4851 0.8401 0.0004 25 1 -0.7626 -2.3976 0.0867 26 1 -0.2050 -1.7861 -1.5008 27 1 0.3648 -4.0022 -2.2794 28 1 -1.1119 -4.3272 -1.3116 29 1 1.2851 -5.7822 1.7696 30 1 2.7855 -9.7308 2.3820 31 1 2.9252 -10.0620 -0.0530 32 1 3.0989 -8.0356 -2.2501 33 1 2.7623 -3.9111 -0.4400 34 1 2.0724 -3.7932 1.2014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230295385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:49 Heat of formation + Delta-G solvation = -70.866653 kcal Electronic energy + Delta-G solvation = -20083.445520 eV Core-core repulsion = 16704.375432 eV Total energy + Delta-G solvation = -3379.070088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.96749 -40.43780 -38.35145 -36.49489 -36.06442 -32.38254 -30.54416 -29.54478 -28.87853 -27.47060 -24.67825 -23.10126 -22.54231 -20.41070 -20.33447 -18.79976 -18.04636 -17.22504 -16.66690 -16.21141 -15.86011 -15.42603 -15.06876 -14.79676 -14.33862 -14.09739 -13.79840 -13.69443 -13.27702 -12.54876 -12.44588 -11.94444 -11.84929 -11.78807 -11.49793 -10.95781 -10.85118 -10.81576 -10.48620 -10.33450 -10.08943 -9.95233 -9.82780 -8.93725 -8.67224 -8.15831 -6.86393 -5.84119 -3.20721 0.91292 1.13408 3.18490 3.34493 3.36525 3.41932 3.43730 4.06310 4.16431 4.43305 4.62786 4.85545 4.96729 5.15859 5.20514 5.31394 5.40896 5.51171 5.64608 5.69840 5.88268 5.98594 6.06274 6.15044 6.30708 6.40232 6.42845 6.53049 6.62624 7.28741 7.35560 7.47714 7.66922 7.70927 8.16353 9.09142 9.70343 10.38165 11.29474 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.004622 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.620837 B = 6056.589294 C = 6528.388533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.597 5.597 10 C 0.175 3.825 11 C -0.135 4.135 12 C 0.065 3.935 13 H 0.080 0.920 14 O -0.288 6.288 15 C 0.148 3.852 16 C -0.234 4.234 17 C 0.133 3.867 18 F -0.136 7.136 19 C -0.186 4.186 20 C -0.080 4.080 21 C 0.056 3.944 22 O -0.483 6.483 23 C 0.118 3.882 24 H 0.255 0.745 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.386 0.614 33 H 0.035 0.965 34 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -16.947 0.315 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.743 3.257 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.324 5.324 10 C 0.050 3.950 11 C -0.174 4.174 12 C 0.009 3.991 13 H 0.098 0.902 14 O -0.200 6.200 15 C 0.100 3.900 16 C -0.253 4.253 17 C 0.114 3.886 18 F -0.114 7.114 19 C -0.205 4.205 20 C -0.099 4.099 21 C 0.011 3.989 22 O -0.292 6.292 23 C -0.009 4.009 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.242 0.758 33 H 0.052 0.948 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.918 -16.891 0.228 17.143 hybrid contribution 0.843 1.200 0.510 1.553 sum 3.761 -15.691 0.739 16.153 Atomic orbital electron populations 1.69930 1.05092 1.25541 1.55578 1.24932 0.95637 0.98030 1.01296 0.86090 0.78780 0.83209 0.77607 1.21433 1.21602 1.20440 1.19001 0.90800 0.82413 1.44160 0.90681 1.44318 1.14214 1.00001 1.73911 1.21441 0.87029 0.89552 0.96996 1.23208 0.97895 0.97820 0.98442 1.23765 0.95216 0.82627 0.97486 0.90247 1.86256 1.74352 1.25326 1.34043 1.19263 0.93949 0.88128 0.88619 1.21310 1.09829 1.01806 0.92392 1.17397 0.99674 0.94481 0.77097 1.91511 1.93901 1.95797 1.30236 1.20853 1.06673 0.97185 0.95766 1.21020 0.98059 0.98848 0.91949 1.17759 1.05995 0.90981 0.84192 1.84908 1.40566 1.87040 1.16718 1.21744 0.94852 0.86703 0.97555 0.93494 0.94457 0.91450 0.90646 0.91196 0.83215 0.84384 0.83917 0.75833 0.94754 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.50 10.93 55.49 0.61 -25.89 16 2 C 0.00 -0.04 5.39 -17.43 -0.09 -0.13 16 3 Si 0.91 21.81 29.56 -169.99 -5.03 16.79 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.24 -6.55 10.21 -15.06 -0.15 -6.70 16 8 H 0.08 2.04 7.84 -52.49 -0.41 1.62 16 9 N -0.60 -15.23 3.39 -169.94 -0.58 -15.80 16 10 C 0.17 4.13 5.37 -2.41 -0.01 4.12 16 11 C -0.14 -2.54 6.83 -24.46 -0.17 -2.70 16 12 C 0.07 1.18 2.75 -24.89 -0.07 1.11 16 13 H 0.08 1.35 6.40 -51.93 -0.33 1.02 16 14 O -0.29 -4.91 9.66 -34.24 -0.33 -5.24 16 15 C 0.15 2.23 6.67 -39.13 -0.26 1.96 16 16 C -0.23 -3.39 8.82 -39.39 -0.35 -3.74 16 17 C 0.13 1.74 7.30 -39.43 -0.29 1.46 16 18 F -0.14 -1.86 17.26 2.25 0.04 -1.82 16 19 C -0.19 -1.99 10.02 -39.50 -0.40 -2.38 16 20 C -0.08 -0.83 9.98 -39.46 -0.39 -1.23 16 21 C 0.06 0.73 6.72 -39.14 -0.26 0.46 16 22 O -0.48 -5.85 13.29 -34.40 -0.46 -6.31 16 23 C 0.12 2.49 6.67 -3.06 -0.02 2.47 16 24 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.04 0.94 7.93 -51.93 -0.41 0.53 16 26 H 0.07 1.74 7.36 -51.93 -0.38 1.36 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.15 2.26 5.48 -52.49 -0.29 1.97 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.39 2.99 9.07 45.56 0.41 3.41 16 33 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 34 H 0.03 0.57 7.64 -51.93 -0.40 0.17 16 LS Contribution 292.59 15.07 4.41 4.41 Total: -1.00 -31.16 292.59 -6.85 -38.01 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.05 Total: 1.17 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.46 Total: -5.31 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.03 Total: -41.70 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.79 Total: -11.55 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.16 -6.85 -38.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230295385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.859 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds