Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99753 * 2 1 4 4 H 1.48501 * 109.47485 * 274.96426 * 3 2 1 5 5 H 1.48502 * 109.47242 * 34.96491 * 3 2 1 6 6 H 1.48504 * 109.47131 * 154.96516 * 3 2 1 7 7 C 1.38809 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99871 * 188.34543 * 7 2 1 9 9 N 1.36931 * 120.00058 * 8.62367 * 7 2 1 10 10 C 1.47428 * 125.64874 * 16.43995 * 9 7 2 11 11 C 1.55127 * 104.72344 * 155.82093 * 10 9 7 12 12 C 1.55159 * 101.48626 * 37.29616 * 11 10 9 13 13 H 1.08995 * 110.72160 * 82.69387 * 12 11 10 14 14 O 1.42898 * 110.87509 * 205.89984 * 12 11 10 15 15 C 1.35987 * 117.00188 * 201.69373 * 14 12 11 16 16 C 1.38565 * 120.05896 * 354.36501 * 15 14 12 17 17 C 1.38425 * 119.97765 * 179.97438 * 16 15 14 18 18 F 1.35095 * 119.95393 * 179.97438 * 17 16 15 19 19 C 1.38455 * 120.09539 * 0.02562 * 17 16 15 20 20 C 1.38254 * 120.11624 * 359.97438 * 19 17 16 21 21 C 1.38541 * 120.02387 * 359.78971 * 20 19 17 22 22 O 1.36037 * 120.04369 * 180.23011 * 21 20 19 23 23 C 1.47021 * 125.64983 * 196.75661 * 9 7 2 24 24 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 25 25 H 1.09001 * 110.36657 * 274.74963 * 10 9 7 26 26 H 1.09000 * 110.36399 * 37.07107 * 10 9 7 27 27 H 1.09000 * 111.19266 * 279.19218 * 11 10 9 28 28 H 1.08997 * 110.94448 * 155.28923 * 11 10 9 29 29 H 1.07999 * 120.01537 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.93948 * 180.02562 * 19 17 16 31 31 H 1.08004 * 119.98214 * 180.02562 * 20 19 17 32 32 H 0.96702 * 114.00411 * 270.22835 * 22 21 20 33 33 H 1.09003 * 109.87944 * 300.43301 * 23 9 7 34 34 H 1.08993 * 109.88260 * 61.44382 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3927 2.1071 -1.3948 5 1 1.5039 2.6201 0.8024 6 1 3.5962 1.4122 0.5925 7 6 2.0102 -1.2021 -0.0005 8 1 3.0817 -1.2071 0.1352 9 7 1.3372 -2.3812 -0.1789 10 6 -0.0305 -2.5177 -0.7119 11 6 -0.0871 -3.9567 -1.2886 12 6 0.7637 -4.7383 -0.2529 13 1 0.1622 -5.0084 0.6151 14 8 1.3443 -5.9020 -0.8452 15 6 1.7207 -6.9010 -0.0029 16 6 1.6438 -6.7186 1.3685 17 6 2.0270 -7.7369 2.2243 18 9 1.9523 -7.5583 3.5613 19 6 2.4876 -8.9379 1.7120 20 6 2.5659 -9.1242 0.3443 21 6 2.1791 -8.1101 -0.5167 22 8 2.2516 -8.2946 -1.8626 23 6 1.8565 -3.7202 0.1356 24 1 -0.4851 0.8401 0.0004 25 1 -0.7626 -2.3976 0.0867 26 1 -0.2050 -1.7861 -1.5008 27 1 0.3648 -4.0022 -2.2794 28 1 -1.1119 -4.3272 -1.3116 29 1 1.2851 -5.7822 1.7696 30 1 2.7855 -9.7308 2.3820 31 1 2.9252 -10.0620 -0.0530 32 1 3.0989 -8.0356 -2.2501 33 1 2.7623 -3.9111 -0.4400 34 1 2.0724 -3.7932 1.2014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230295385.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -91.367268 kcal Electronic energy + Delta-G solvation = -20084.334493 eV Core-core repulsion = 16704.375432 eV Total energy + Delta-G solvation = -3379.959061 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.98688 -41.57310 -39.63634 -37.85965 -37.22907 -34.34957 -31.65136 -31.16971 -30.12353 -29.07612 -26.57953 -24.26395 -23.58214 -22.24780 -21.77700 -19.88806 -19.16030 -18.93422 -17.97321 -17.35945 -16.90143 -16.81662 -16.45920 -16.39849 -15.80076 -15.22743 -15.20441 -14.97191 -14.46975 -14.34168 -13.78298 -13.61197 -13.34875 -12.89044 -12.82587 -12.76268 -12.61346 -12.36342 -12.03695 -11.93440 -11.66652 -11.63932 -11.54953 -10.75983 -9.93421 -9.20247 -8.91739 -7.95987 -5.35449 -0.04809 0.15832 1.45105 1.46476 1.56012 1.96123 2.38170 2.46486 3.09190 3.23435 3.25332 3.53038 3.58000 3.71101 3.85204 3.90977 4.01872 4.06937 4.38936 4.53529 4.62690 4.78065 4.80913 4.89073 4.89891 4.97468 5.07824 5.15928 5.32231 5.49912 5.59286 5.63324 6.11824 6.19026 6.85074 6.99690 7.64682 8.32396 9.16510 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.004622 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.620837 B = 6056.589294 C = 6528.388533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.054 4.054 3 Si 0.980 3.020 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.255 4.255 8 H 0.075 0.925 9 N -0.619 5.619 10 C 0.180 3.820 11 C -0.120 4.120 12 C 0.083 3.917 13 H 0.089 0.911 14 O -0.297 6.297 15 C 0.116 3.884 16 C -0.245 4.245 17 C 0.116 3.884 18 F -0.143 7.143 19 C -0.166 4.166 20 C -0.067 4.067 21 C 0.059 3.941 22 O -0.494 6.494 23 C 0.118 3.882 24 H 0.252 0.748 25 H 0.014 0.986 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.171 0.829 31 H 0.182 0.818 32 H 0.406 0.594 33 H 0.032 0.968 34 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -19.245 0.177 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.248 4.248 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.347 5.347 10 C 0.055 3.945 11 C -0.159 4.159 12 C 0.027 3.973 13 H 0.107 0.893 14 O -0.209 6.209 15 C 0.070 3.930 16 C -0.264 4.264 17 C 0.096 3.904 18 F -0.122 7.122 19 C -0.185 4.185 20 C -0.085 4.085 21 C 0.013 3.987 22 O -0.306 6.306 23 C -0.007 4.007 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.152 0.848 30 H 0.189 0.811 31 H 0.199 0.801 32 H 0.264 0.736 33 H 0.050 0.950 34 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.046 -19.223 0.086 19.644 hybrid contribution 0.570 1.771 0.566 1.945 sum 4.617 -17.452 0.652 18.064 Atomic orbital electron populations 1.70106 1.06462 1.26017 1.56509 1.25760 0.96521 1.01255 1.01283 0.85050 0.77864 0.78799 0.77517 1.21043 1.21706 1.19282 1.19346 0.91219 0.83806 1.44001 0.90686 1.44602 1.14797 1.00981 1.74301 1.21230 0.85901 0.91970 0.95386 1.23020 0.99905 0.94651 0.98276 1.23386 0.93874 0.82654 0.97403 0.89285 1.86204 1.75109 1.25237 1.34372 1.19551 0.96225 0.88608 0.88654 1.21240 1.10654 1.01854 0.92690 1.17607 1.00762 0.95294 0.76720 1.91493 1.94077 1.95932 1.30658 1.21250 1.04126 0.96594 0.96490 1.21405 0.96429 0.99323 0.91320 1.18003 1.05225 0.90546 0.84914 1.84852 1.42305 1.86984 1.16432 1.21805 0.95820 0.85842 0.97280 0.93862 0.96775 0.94480 0.90386 0.88302 0.84795 0.81128 0.80123 0.73612 0.95041 0.95757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.27 10.93 21.65 0.24 -56.03 16 2 C -0.05 -3.05 5.39 84.86 0.46 -2.59 16 3 Si 0.98 45.45 29.56 68.60 2.03 47.47 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.25 -14.52 10.21 84.03 0.86 -13.66 16 8 H 0.08 4.14 7.84 -2.91 -0.02 4.12 16 9 N -0.62 -32.50 3.39 -691.55 -2.34 -34.85 16 10 C 0.18 8.80 5.37 86.93 0.47 9.27 16 11 C -0.12 -4.49 6.83 32.06 0.22 -4.27 16 12 C 0.08 3.01 2.75 31.78 0.09 3.10 16 13 H 0.09 3.04 6.40 -2.39 -0.02 3.02 16 14 O -0.30 -9.89 9.66 -79.50 -0.77 -10.66 16 15 C 0.12 3.35 6.67 22.56 0.15 3.51 16 16 C -0.24 -6.97 8.82 22.39 0.20 -6.78 16 17 C 0.12 2.84 7.30 22.37 0.16 3.00 16 18 F -0.14 -3.75 17.26 44.97 0.78 -2.98 16 19 C -0.17 -2.93 10.02 22.33 0.22 -2.71 16 20 C -0.07 -1.11 9.98 22.35 0.22 -0.88 16 21 C 0.06 1.36 6.72 22.56 0.15 1.51 16 22 O -0.49 -10.58 13.29 -80.07 -1.06 -11.65 16 23 C 0.12 5.11 6.67 86.73 0.58 5.69 16 24 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 25 H 0.01 0.75 7.93 -2.39 -0.02 0.73 16 26 H 0.04 2.00 7.36 -2.39 -0.02 1.98 16 27 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.13 4.14 5.48 -2.91 -0.02 4.13 16 30 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 32 H 0.41 5.18 9.07 -74.06 -0.67 4.51 16 33 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 34 H 0.02 1.06 7.64 -2.39 -0.02 1.04 16 Total: -1.00 -68.54 292.59 3.11 -65.44 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.46 Total: 8.08 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 3.78 Total: -4.82 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -2.11 Total: -90.88 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.83 Total: -22.31 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.54 3.11 -65.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230295385.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.932 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds