Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48502 * 109.47139 * 90.00114 * 3 2 1 5 5 H 1.48504 * 109.46982 * 210.00160 * 3 2 1 6 6 H 1.48499 * 109.47035 * 329.99893 * 3 2 1 7 7 C 1.37875 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00370 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00010 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47143 * 179.97438 * 9 7 2 11 11 C 1.47473 * 111.00214 * 265.96774 * 10 9 7 12 12 C 1.53506 * 87.93752 * 221.29889 * 11 10 9 13 13 O 1.42891 * 114.17371 * 139.67135 * 12 11 10 14 14 C 1.35899 * 117.00120 * 107.87811 * 13 12 11 15 15 C 1.38670 * 120.01425 * 173.77061 * 14 13 12 16 16 C 1.38632 * 119.93811 * 179.72650 * 15 14 13 17 17 O 1.35895 * 120.01611 * 180.29712 * 16 15 14 18 18 C 1.38756 * 119.97010 * 0.54790 * 16 15 14 19 19 C 1.38375 * 120.02965 * 359.72947 * 18 16 15 20 20 F 1.35103 * 119.97351 * 180.02562 * 19 18 16 21 21 C 1.38425 * 120.05941 * 359.97438 * 19 18 16 22 22 C 1.47481 * 110.99716 * 169.99831 * 10 9 7 23 23 H 0.96991 * 120.00298 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47356 * 299.99851 * 9 7 2 25 25 H 1.08998 * 109.47382 * 59.99942 * 9 7 2 26 26 H 1.09003 * 113.47596 * 336.07202 * 11 10 9 27 27 H 1.08999 * 113.47612 * 106.52618 * 11 10 9 28 28 H 1.09007 * 114.17020 * 272.38204 * 12 11 10 29 29 H 1.08000 * 120.03171 * 359.97438 * 15 14 13 30 30 H 0.96702 * 113.99724 * 270.25341 * 17 16 15 31 31 H 1.08001 * 119.98545 * 179.74596 * 18 16 15 32 32 H 1.08000 * 119.98688 * 180.02562 * 21 19 18 33 33 H 1.09006 * 113.47672 * 253.46909 * 22 10 9 34 34 H 1.08999 * 113.47862 * 23.93807 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 2.4746 -4.0797 -1.3755 12 6 2.4185 -5.5178 -0.8415 13 8 1.7480 -6.4372 -1.7056 14 6 2.5203 -7.3427 -2.3617 15 6 1.9267 -8.3450 -3.1140 16 6 2.7162 -9.2645 -3.7873 17 8 2.1362 -10.2437 -4.5298 18 6 4.0988 -9.1875 -3.6984 19 6 4.6897 -8.1903 -2.9427 20 9 6.0360 -8.1162 -2.8573 21 6 3.9027 -7.2679 -2.2749 22 6 1.5187 -4.8986 0.2373 23 1 -0.4850 0.8399 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8902 26 1 1.6741 -3.8456 -2.0774 27 1 3.4584 -3.7922 -1.7463 28 1 3.3713 -5.8923 -0.4669 29 1 0.8504 -8.4069 -3.1786 30 1 1.9521 -11.0547 -4.0363 31 1 4.7140 -9.9062 -4.2194 32 1 4.3652 -6.4898 -1.6857 33 1 1.6926 -5.3053 1.2336 34 1 0.4632 -4.8832 -0.0341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233817645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = -55.567245 kcal Electronic energy + Delta-G solvation = -19373.314396 eV Core-core repulsion = 15994.907740 eV Total energy + Delta-G solvation = -3378.406656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.13604 -40.67260 -39.45921 -37.86309 -35.81178 -32.93487 -30.54409 -29.80367 -29.13587 -25.69328 -25.37706 -23.25219 -22.91372 -21.49569 -19.69874 -19.27122 -17.59186 -16.97034 -16.52208 -16.40094 -16.17391 -15.91508 -15.37890 -15.10974 -14.73653 -14.44866 -14.34132 -13.82911 -13.36426 -12.96829 -12.31905 -12.17203 -12.02094 -11.94632 -11.61835 -11.33188 -11.17626 -10.99320 -10.62944 -10.36049 -10.10235 -9.87378 -9.31566 -8.98143 -8.49823 -8.46163 -8.08500 -6.08937 -4.10840 0.78920 0.99118 2.91044 3.23044 3.29679 3.35488 3.39759 3.74896 4.14856 4.38311 4.55187 4.68865 4.75020 4.76762 4.80910 4.99194 5.07041 5.26525 5.50714 5.72123 5.80416 5.86476 5.90726 5.99418 6.01720 6.14379 6.19755 6.34985 6.42073 7.06932 7.23312 7.31824 7.53868 7.74559 8.00003 8.34647 8.96187 9.53642 11.02170 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.003550 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.939800 B = 7884.772843 C = 8320.010627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.161 3.839 10 N -0.459 5.459 11 C -0.004 4.004 12 C 0.037 3.963 13 O -0.293 6.293 14 C 0.187 3.813 15 C -0.194 4.194 16 C 0.173 3.827 17 O -0.492 6.492 18 C -0.227 4.227 19 C 0.158 3.842 20 F -0.133 7.133 21 C -0.256 4.256 22 C 0.005 3.995 23 H 0.262 0.738 24 H 0.032 0.968 25 H 0.007 0.993 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.143 0.857 30 H 0.396 0.604 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.087 0.913 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -20.046 -5.399 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.035 3.965 10 N -0.184 5.184 11 C -0.133 4.133 12 C -0.019 4.019 13 O -0.204 6.204 14 C 0.140 3.860 15 C -0.214 4.214 16 C 0.128 3.872 17 O -0.303 6.303 18 C -0.246 4.246 19 C 0.138 3.862 20 F -0.112 7.112 21 C -0.275 4.275 22 C -0.124 4.124 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.025 0.975 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.161 0.839 30 H 0.253 0.747 31 H 0.158 0.842 32 H 0.167 0.833 33 H 0.105 0.895 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.465 -19.208 -5.401 20.688 hybrid contribution 0.030 0.559 -0.104 0.570 sum 5.495 -18.649 -5.504 20.206 Atomic orbital electron populations 1.69947 1.06096 1.26975 1.50820 1.25007 0.94911 0.99468 0.95279 0.86447 0.79706 0.82803 0.78180 1.20553 1.19786 1.21233 1.21070 0.93628 0.89626 1.50328 0.91763 1.20302 0.90489 0.88679 0.97041 1.69052 1.33873 1.01448 1.14048 1.24303 1.03118 0.91294 0.94616 1.24681 0.97726 0.87700 0.91775 1.86242 1.35467 1.42612 1.56092 1.18460 0.88628 0.88306 0.90606 1.20699 1.01598 0.97030 1.02041 1.17639 0.89142 0.90114 0.90304 1.84814 1.81483 1.26095 1.37863 1.21168 0.95162 1.02626 1.05689 1.17050 0.76871 0.95321 0.96937 1.91526 1.29215 1.95791 1.94632 1.21321 0.93415 1.04250 1.08509 1.24045 0.98024 0.92628 0.97711 0.92798 0.94964 0.97506 0.90504 0.89904 0.87157 0.83876 0.74659 0.84172 0.83345 0.89498 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.34 9.39 -34.44 -0.32 -14.66 16 8 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 9 C 0.16 4.13 4.57 -4.97 -0.02 4.11 16 10 N -0.46 -9.68 6.32 -246.13 -1.55 -11.24 16 11 C 0.00 -0.07 7.55 -7.56 -0.06 -0.13 16 12 C 0.04 0.56 4.01 -26.20 -0.10 0.46 16 13 O -0.29 -4.28 10.18 -19.42 -0.20 -4.48 16 14 C 0.19 2.41 6.67 -39.25 -0.26 2.15 16 15 C -0.19 -2.20 9.92 -39.28 -0.39 -2.59 16 16 C 0.17 1.75 6.70 -39.24 -0.26 1.49 16 17 O -0.49 -4.07 13.50 -19.41 -0.26 -4.33 16 18 C -0.23 -2.33 9.96 -39.34 -0.39 -2.72 16 19 C 0.16 1.84 7.29 -39.46 -0.29 1.55 16 20 F -0.13 -1.61 17.27 2.25 0.04 -1.57 16 21 C -0.26 -3.13 9.00 -39.34 -0.35 -3.49 16 22 C 0.01 0.09 7.52 -7.55 -0.06 0.03 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 25 H 0.01 0.19 7.30 -51.93 -0.38 -0.19 16 26 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.11 1.46 6.00 -51.93 -0.31 1.15 16 29 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.40 1.19 9.06 45.56 0.41 1.60 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.15 1.75 5.92 -52.49 -0.31 1.44 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 LS Contribution 299.67 15.07 4.52 4.52 Total: -1.00 -31.38 299.67 -7.39 -38.77 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -3.04 Total: -0.09 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -2.61 Total: -12.35 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.82 Total: -37.09 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.46 Total: -8.81 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.38 -7.39 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233817645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.797 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds