Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99843 * 2 1 4 4 H 1.48502 * 109.47139 * 90.00114 * 3 2 1 5 5 H 1.48504 * 109.46982 * 210.00160 * 3 2 1 6 6 H 1.48499 * 109.47035 * 329.99893 * 3 2 1 7 7 C 1.37875 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00370 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00010 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47143 * 179.97438 * 9 7 2 11 11 C 1.47473 * 111.00214 * 265.96774 * 10 9 7 12 12 C 1.53506 * 87.93752 * 221.29889 * 11 10 9 13 13 O 1.42891 * 114.17371 * 139.67135 * 12 11 10 14 14 C 1.35899 * 117.00120 * 107.87811 * 13 12 11 15 15 C 1.38670 * 120.01425 * 173.77061 * 14 13 12 16 16 C 1.38632 * 119.93811 * 179.72650 * 15 14 13 17 17 O 1.35895 * 120.01611 * 180.29712 * 16 15 14 18 18 C 1.38756 * 119.97010 * 0.54790 * 16 15 14 19 19 C 1.38375 * 120.02965 * 359.72947 * 18 16 15 20 20 F 1.35103 * 119.97351 * 180.02562 * 19 18 16 21 21 C 1.38425 * 120.05941 * 359.97438 * 19 18 16 22 22 C 1.47481 * 110.99716 * 169.99831 * 10 9 7 23 23 H 0.96991 * 120.00298 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47356 * 299.99851 * 9 7 2 25 25 H 1.08998 * 109.47382 * 59.99942 * 9 7 2 26 26 H 1.09003 * 113.47596 * 336.07202 * 11 10 9 27 27 H 1.08999 * 113.47612 * 106.52618 * 11 10 9 28 28 H 1.09007 * 114.17020 * 272.38204 * 12 11 10 29 29 H 1.08000 * 120.03171 * 359.97438 * 15 14 13 30 30 H 0.96702 * 113.99724 * 270.25341 * 17 16 15 31 31 H 1.08001 * 119.98545 * 179.74596 * 18 16 15 32 32 H 1.08000 * 119.98688 * 180.02562 * 21 19 18 33 33 H 1.09006 * 113.47672 * 253.46909 * 22 10 9 34 34 H 1.08999 * 113.47862 * 23.93807 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0018 11 6 2.4746 -4.0797 -1.3755 12 6 2.4185 -5.5178 -0.8415 13 8 1.7480 -6.4372 -1.7056 14 6 2.5203 -7.3427 -2.3617 15 6 1.9267 -8.3450 -3.1140 16 6 2.7162 -9.2645 -3.7873 17 8 2.1362 -10.2437 -4.5298 18 6 4.0988 -9.1875 -3.6984 19 6 4.6897 -8.1903 -2.9427 20 9 6.0360 -8.1162 -2.8573 21 6 3.9027 -7.2679 -2.2749 22 6 1.5187 -4.8986 0.2373 23 1 -0.4850 0.8399 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6241 -2.5567 -0.8902 26 1 1.6741 -3.8456 -2.0774 27 1 3.4584 -3.7922 -1.7463 28 1 3.3713 -5.8923 -0.4669 29 1 0.8504 -8.4069 -3.1786 30 1 1.9521 -11.0547 -4.0363 31 1 4.7140 -9.9062 -4.2194 32 1 4.3652 -6.4898 -1.6857 33 1 1.6926 -5.3053 1.2336 34 1 0.4632 -4.8832 -0.0341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233817645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = -79.552509 kcal Electronic energy + Delta-G solvation = -19374.354475 eV Core-core repulsion = 15994.907740 eV Total energy + Delta-G solvation = -3379.446735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.03682 -41.82784 -40.53757 -38.93540 -36.72323 -35.04305 -31.73922 -30.78883 -30.57911 -27.38332 -26.91813 -24.54167 -23.83768 -22.99130 -21.07330 -20.22717 -18.70783 -18.36556 -17.87434 -17.32625 -17.25860 -16.88870 -16.75525 -16.42966 -16.19174 -15.62917 -15.53537 -14.91757 -14.86042 -14.26109 -14.04864 -13.77471 -13.44220 -12.98182 -12.88996 -12.72446 -12.55328 -12.40095 -12.14894 -11.95210 -11.73389 -11.40747 -11.23135 -10.64314 -9.84462 -9.82643 -9.41088 -8.25679 -6.36369 -0.05659 0.10861 1.39818 1.41258 1.52671 1.85986 2.35301 2.38248 2.91373 3.06649 3.17018 3.28962 3.37776 3.69297 3.87796 3.91930 3.98322 4.10855 4.30067 4.41157 4.56165 4.61435 4.75553 4.81608 4.82149 4.92786 5.00471 5.10464 5.17096 5.49490 5.51955 5.69467 5.99370 6.23307 6.32909 6.77345 6.77390 7.33389 8.85731 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.032936 B = 0.003550 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.939800 B = 7884.772843 C = 8320.010627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.061 0.939 9 C 0.175 3.825 10 N -0.475 5.475 11 C -0.011 4.011 12 C 0.068 3.932 13 O -0.304 6.304 14 C 0.167 3.833 15 C -0.197 4.197 16 C 0.185 3.815 17 O -0.496 6.496 18 C -0.219 4.219 19 C 0.149 3.851 20 F -0.137 7.137 21 C -0.261 4.261 22 C 0.002 3.998 23 H 0.266 0.734 24 H 0.008 0.992 25 H -0.018 1.018 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.150 0.850 30 H 0.421 0.579 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.109 0.891 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -21.308 -5.942 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.079 0.921 9 C 0.048 3.952 10 N -0.199 5.199 11 C -0.140 4.140 12 C 0.012 3.988 13 O -0.216 6.216 14 C 0.121 3.879 15 C -0.216 4.216 16 C 0.139 3.861 17 O -0.310 6.310 18 C -0.238 4.238 19 C 0.129 3.871 20 F -0.116 7.116 21 C -0.281 4.281 22 C -0.127 4.127 23 H 0.075 0.925 24 H 0.026 0.974 25 H -0.001 1.001 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.153 0.847 29 H 0.168 0.832 30 H 0.283 0.717 31 H 0.178 0.822 32 H 0.167 0.833 33 H 0.128 0.872 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.728 -20.519 -5.941 22.396 hybrid contribution -0.385 0.775 -0.019 0.865 sum 6.342 -19.745 -5.960 21.578 Atomic orbital electron populations 1.70067 1.07714 1.28121 1.51472 1.25942 0.95809 1.03329 0.94576 0.85342 0.78480 0.77993 0.78572 1.19641 1.18952 1.20577 1.21414 0.93688 0.91077 1.50540 0.92063 1.19954 0.90529 0.90119 0.94568 1.68919 1.33036 1.01798 1.16107 1.24328 1.02768 0.93912 0.93028 1.24304 0.97899 0.86352 0.90260 1.86204 1.35869 1.43005 1.56526 1.18600 0.88871 0.88766 0.91659 1.20873 1.02218 0.96776 1.01768 1.17583 0.88993 0.90148 0.89362 1.84766 1.81186 1.26930 1.38154 1.21398 0.95453 1.02191 1.04743 1.17145 0.76711 0.95762 0.97481 1.91518 1.29470 1.95859 1.94721 1.21336 0.93256 1.04613 1.08864 1.24098 0.97800 0.90919 0.99873 0.92505 0.97435 1.00055 0.92253 0.89138 0.84686 0.83216 0.71743 0.82171 0.83259 0.87246 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.53 -30.47 9.39 25.60 0.24 -30.23 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 9 C 0.18 9.36 4.57 85.56 0.39 9.75 16 10 N -0.47 -20.32 6.32 -933.02 -5.89 -26.21 16 11 C -0.01 -0.41 7.55 83.57 0.63 0.22 16 12 C 0.07 2.00 4.01 30.94 0.12 2.12 16 13 O -0.30 -8.67 10.18 -92.41 -0.94 -9.61 16 14 C 0.17 4.09 6.67 22.49 0.15 4.24 16 15 C -0.20 -4.11 9.92 22.47 0.22 -3.88 16 16 C 0.18 3.25 6.70 22.49 0.15 3.40 16 17 O -0.50 -6.63 13.50 -92.37 -1.25 -7.87 16 18 C -0.22 -3.90 9.96 22.43 0.22 -3.68 16 19 C 0.15 3.18 7.29 22.35 0.16 3.34 16 20 F -0.14 -3.08 17.27 44.97 0.78 -2.30 16 21 C -0.26 -6.02 9.00 22.43 0.20 -5.82 16 22 C 0.00 0.07 7.52 83.57 0.63 0.69 16 23 H 0.27 15.04 8.31 -92.72 -0.77 14.27 16 24 H 0.01 0.43 8.08 -2.38 -0.02 0.41 16 25 H -0.02 -1.05 7.30 -2.39 -0.02 -1.07 16 26 H 0.06 2.39 7.42 -2.39 -0.02 2.37 16 27 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.14 3.31 6.00 -2.38 -0.01 3.30 16 29 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 30 H 0.42 1.05 9.06 -74.06 -0.67 0.38 16 31 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 32 H 0.15 3.31 5.92 -2.91 -0.02 3.29 16 33 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 34 H 0.07 2.36 7.91 -2.39 -0.02 2.34 16 Total: -1.00 -67.82 299.67 -0.94 -68.75 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 0.47 Total: 6.02 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 3.59 Total: -19.28 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -5.61 Total: -82.24 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -2.19 Total: -17.48 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.82 -0.94 -68.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233817645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.798 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds