Wall clock time and date at job start Mon Mar 30 2020 01:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 120.00202 * 2 1 4 4 H 1.48499 * 109.47390 * 353.79748 * 3 2 1 5 5 H 1.48498 * 109.47290 * 113.79835 * 3 2 1 6 6 H 1.48508 * 109.47245 * 233.79992 * 3 2 1 7 7 C 1.38810 * 119.99690 * 180.27538 * 2 1 3 8 8 H 1.07999 * 120.00390 * 15.46107 * 7 2 1 9 9 N 1.36941 * 120.00129 * 195.45987 * 7 2 1 10 10 C 1.47018 * 125.64447 * 8.29796 * 9 7 2 11 11 C 1.54327 * 107.26892 * 181.01983 * 10 9 7 12 12 C 1.55157 * 102.94213 * 22.19630 * 11 10 9 13 13 H 1.08996 * 111.00634 * 82.60876 * 12 11 10 14 14 O 1.42900 * 111.00137 * 206.42619 * 12 11 10 15 15 C 1.35951 * 116.99606 * 202.62382 * 14 12 11 16 16 C 1.38752 * 120.03661 * 354.57171 * 15 14 12 17 17 C 1.38181 * 120.06738 * 179.97438 * 16 15 14 18 18 C 1.38217 * 120.13739 * 359.97438 * 17 16 15 19 19 C 1.38702 * 120.07465 * 0.04180 * 18 17 16 20 20 O 1.35949 * 120.03927 * 179.97438 * 19 18 17 21 21 C 1.38761 * 120.03400 * 174.29118 * 15 14 12 22 22 F 1.35096 * 120.06607 * 0.02562 * 21 15 14 23 23 C 1.47419 * 125.64863 * 187.98701 * 9 7 2 24 24 H 0.96992 * 120.00080 * 185.15665 * 1 2 3 25 25 H 1.08995 * 109.88355 * 300.43673 * 10 9 7 26 26 H 1.09004 * 109.88794 * 61.44976 * 10 9 7 27 27 H 1.09006 * 110.71616 * 140.55804 * 11 10 9 28 28 H 1.08990 * 110.72053 * 263.82649 * 11 10 9 29 29 H 1.07992 * 119.96402 * 359.97224 * 16 15 14 30 30 H 1.08002 * 119.93049 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.96272 * 180.02562 * 18 17 16 32 32 H 0.96702 * 114.00142 * 90.00752 * 20 19 18 33 33 H 1.09001 * 110.36826 * 274.74830 * 23 9 7 34 34 H 1.09000 * 110.37207 * 37.07164 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2925 2.7423 -0.1513 5 1 2.9870 1.7639 1.2810 6 1 3.2139 1.6329 -1.1299 7 6 2.0102 -1.2022 -0.0058 8 1 1.4996 -2.1193 -0.2595 9 7 3.3425 -1.2252 0.3102 10 6 4.1177 -0.0927 0.8372 11 6 5.5720 -0.5770 1.0166 12 6 5.6574 -1.7867 0.0488 13 1 5.8504 -1.4574 -0.9721 14 8 6.6511 -2.7186 0.4802 15 6 7.1681 -3.5501 -0.4629 16 6 6.6495 -3.5485 -1.7499 17 6 7.1748 -4.3930 -2.7091 18 6 8.2185 -5.2413 -2.3903 19 6 8.7412 -5.2479 -1.1056 20 8 9.7673 -6.0830 -0.7927 21 6 8.2190 -4.3972 -0.1411 22 9 8.7296 -4.3974 1.1096 23 6 4.2353 -2.3916 0.1844 24 1 -0.4850 -0.8366 0.0755 25 1 4.0879 0.7374 0.1315 26 1 3.7084 0.2222 1.7972 27 1 6.2766 0.2016 0.7239 28 1 5.7494 -0.8923 2.0447 29 1 5.8343 -2.8865 -2.0020 30 1 6.7697 -4.3896 -3.7102 31 1 8.6272 -5.8999 -3.1424 32 1 10.6437 -5.6996 -0.9345 33 1 4.1699 -3.0172 1.0746 34 1 3.9826 -2.9686 -0.7051 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233873489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:54 Heat of formation + Delta-G solvation = -81.077400 kcal Electronic energy + Delta-G solvation = -20170.581802 eV Core-core repulsion = 16791.068943 eV Total energy + Delta-G solvation = -3379.512859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.106 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.88631 -41.44244 -39.98561 -38.60622 -37.02943 -34.62953 -31.85163 -31.00696 -30.44975 -29.75990 -26.08326 -24.17259 -23.75596 -22.67530 -21.90969 -20.07955 -19.68639 -18.63704 -18.26908 -17.90383 -17.39727 -17.00412 -16.35082 -15.95312 -15.69733 -15.60787 -15.34701 -15.22671 -14.69256 -14.55956 -14.18958 -13.66846 -13.23567 -13.19681 -13.12496 -12.90606 -12.71305 -12.20603 -11.86881 -11.74450 -11.65344 -11.43209 -11.10904 -10.73937 -9.78794 -9.35771 -9.18114 -8.69596 -5.53226 -0.06984 0.12187 1.41293 1.50762 1.70698 1.79730 2.39594 2.55021 2.94212 3.07056 3.29019 3.32076 3.42741 3.65808 3.73640 3.85297 3.88012 4.08703 4.20269 4.27195 4.42769 4.60261 4.75265 4.78028 4.83181 4.92543 4.96710 5.06020 5.12220 5.28900 5.43415 5.52096 6.02964 6.18479 6.66981 6.75491 7.35106 7.99716 8.83015 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.037538 B = 0.004602 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.723183 B = 6083.239783 C = 6394.309003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.076 4.076 3 Si 1.108 2.892 4 H -0.312 1.312 5 H -0.251 1.251 6 H -0.273 1.273 7 C -0.318 4.318 8 H 0.046 0.954 9 N -0.629 5.629 10 C 0.099 3.901 11 C -0.111 4.111 12 C 0.078 3.922 13 H 0.107 0.893 14 O -0.308 6.308 15 C 0.098 3.902 16 C -0.198 4.198 17 C -0.060 4.060 18 C -0.148 4.148 19 C 0.113 3.887 20 O -0.495 6.495 21 C 0.007 3.993 22 F -0.144 7.144 23 C 0.116 3.884 24 H 0.248 0.752 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.416 0.584 33 H 0.025 0.975 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.638 -6.858 -5.889 24.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.269 4.269 3 Si 0.935 3.065 4 H -0.241 1.241 5 H -0.176 1.176 6 H -0.200 1.200 7 C -0.446 4.446 8 H 0.064 0.936 9 N -0.358 5.358 10 C -0.025 4.025 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.125 0.875 14 O -0.221 6.221 15 C 0.051 3.949 16 C -0.217 4.217 17 C -0.078 4.078 18 C -0.166 4.166 19 C 0.067 3.933 20 O -0.308 6.308 21 C -0.014 4.014 22 F -0.123 7.123 23 C -0.010 4.010 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.134 0.866 28 H 0.107 0.893 29 H 0.161 0.839 30 H 0.187 0.813 31 H 0.189 0.811 32 H 0.276 0.724 33 H 0.043 0.957 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.016 -5.636 -5.556 23.395 hybrid contribution -0.331 -1.682 0.355 1.751 sum 21.685 -7.319 -5.201 23.470 Atomic orbital electron populations 1.71004 1.07070 1.28528 1.53818 1.27206 0.96390 1.04636 0.98633 0.83431 0.72708 0.71670 0.78726 1.24104 1.17592 1.20045 1.20057 0.84036 0.95260 1.45289 0.93586 1.44695 1.05980 1.08660 1.76451 1.22217 0.91569 0.91360 0.97360 1.22661 0.95360 0.96239 1.00545 1.23744 0.85384 0.88523 1.00248 0.87541 1.86123 1.54062 1.46783 1.35147 1.19164 0.93351 0.92370 0.90003 1.21520 1.03823 1.04566 0.91793 1.21309 0.93891 0.92258 1.00321 1.21563 0.98939 1.01375 0.94769 1.18270 0.93008 0.90522 0.91517 1.84806 1.17447 1.39665 1.88920 1.17751 0.98978 1.02734 0.81920 1.91431 1.86203 1.95999 1.38640 1.22114 0.89389 0.90377 0.99073 0.94337 0.94195 0.93847 0.86645 0.89308 0.83852 0.81270 0.81111 0.72407 0.95693 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.82 13.70 21.65 0.30 -61.53 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 1.11 51.99 24.52 68.60 1.68 53.68 16 4 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 5 H -0.25 -10.32 5.48 99.48 0.55 -9.78 16 6 H -0.27 -11.67 6.78 99.48 0.67 -11.00 16 7 C -0.32 -18.51 10.56 84.03 0.89 -17.62 16 8 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 9 N -0.63 -30.32 3.34 -691.56 -2.31 -32.63 16 10 C 0.10 3.99 4.64 86.73 0.40 4.40 16 11 C -0.11 -3.38 6.68 31.78 0.21 -3.17 16 12 C 0.08 2.47 2.81 32.06 0.09 2.56 16 13 H 0.11 2.98 6.30 -2.39 -0.02 2.96 16 14 O -0.31 -9.82 9.81 -93.00 -0.91 -10.73 16 15 C 0.10 2.74 6.68 22.52 0.15 2.89 16 16 C -0.20 -4.58 8.92 22.38 0.20 -4.38 16 17 C -0.06 -0.99 10.04 22.25 0.22 -0.77 16 18 C -0.15 -2.33 9.98 22.38 0.22 -2.11 16 19 C 0.11 2.35 6.71 22.52 0.15 2.50 16 20 O -0.49 -8.74 13.37 -92.98 -1.24 -9.98 16 21 C 0.01 0.18 7.32 22.53 0.16 0.34 16 22 F -0.14 -4.45 16.95 44.97 0.76 -3.69 16 23 C 0.12 4.67 6.83 86.93 0.59 5.26 16 24 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 25 H 0.04 1.62 3.74 -2.39 -0.01 1.61 16 26 H 0.04 1.84 6.74 -2.38 -0.02 1.83 16 27 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 28 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.14 3.35 5.59 -2.91 -0.02 3.33 16 30 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.42 2.94 9.06 -74.06 -0.67 2.27 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 2.00 7.73 -2.39 -0.02 1.98 16 Total: -1.00 -74.80 284.21 2.28 -72.52 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.24 Total: 6.49 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 3.76 Total: -14.13 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -2.01 Total: -94.16 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -2.15 Total: -20.71 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.76 Total: -3.69 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 1.68 Total: 53.68 kcal Total: -74.80 2.28 -72.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233873489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.561 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds