Wall clock time and date at job start Mon Mar 30 2020 01:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 120.00106 * 2 1 4 4 H 1.48506 * 109.47160 * 240.00182 * 3 2 1 5 5 H 1.48500 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47218 * 119.99808 * 3 2 1 7 7 C 1.39939 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99826 * 197.55081 * 7 2 1 9 9 C 1.41436 * 120.00187 * 17.54699 * 7 2 1 10 10 C 1.40801 * 120.60592 * 203.51968 * 9 7 2 11 11 N 1.31492 * 120.67291 * 179.97438 * 10 9 7 12 12 C 1.31943 * 122.11631 * 359.72582 * 11 10 9 13 13 C 1.39683 * 121.14981 * 0.54337 * 12 11 10 14 14 C 1.48387 * 120.41390 * 179.74578 * 13 12 11 15 15 C 1.39390 * 120.24276 * 179.72032 * 14 13 12 16 16 C 1.37673 * 120.22315 * 180.08831 * 15 14 13 17 17 C 1.39413 * 120.40220 * 0.02562 * 16 15 14 18 18 C 1.39003 * 119.06933 * 359.74268 * 17 16 15 19 19 C 1.37518 * 120.90770 * 0.13476 * 18 17 16 20 20 C 1.51673 * 107.03149 * 180.57174 * 18 17 16 21 21 C 1.54698 * 101.92439 * 15.38279 * 20 18 17 22 22 O 1.36160 * 129.74541 * 179.08710 * 17 16 15 23 23 C 1.39186 * 119.17660 * 359.47270 * 13 12 11 24 24 H 0.97000 * 120.00387 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.66927 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.42475 * 180.29172 * 12 11 10 27 27 H 1.07999 * 119.88704 * 0.11834 * 15 14 13 28 28 H 1.08012 * 119.79988 * 180.02562 * 16 15 14 29 29 H 1.08003 * 120.06414 * 180.02562 * 19 18 17 30 30 H 1.08995 * 110.94067 * 133.54683 * 20 18 17 31 31 H 1.09009 * 110.93804 * 257.19115 * 20 18 17 32 32 H 1.09000 * 110.74207 * 92.99460 * 21 20 18 33 33 H 1.08994 * 110.74762 * 216.15451 * 21 20 18 34 34 H 1.08003 * 120.95382 * 180.27687 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0502 -1.2338 0.2815 9 6 1.3501 -2.4081 -0.3704 10 6 1.8304 -3.6561 0.0705 11 7 1.2196 -4.7690 -0.2721 12 6 0.1396 -4.7718 -1.0300 13 6 -0.4039 -3.5810 -1.5177 14 6 -1.6159 -3.6035 -2.3735 15 6 -2.1586 -2.4126 -2.8534 16 6 -3.2842 -2.4339 -3.6459 17 6 -3.8921 -3.6443 -3.9757 18 6 -3.3427 -4.8283 -3.4977 19 6 -2.2172 -4.8164 -2.7076 20 6 -4.2010 -5.9616 -4.0265 21 6 -5.0055 -5.2582 -5.1450 22 8 -5.0058 -3.8845 -4.7214 23 6 0.2022 -2.3727 -1.1861 24 1 -0.4851 0.8400 0.0004 25 1 2.7090 -3.6998 0.6972 26 1 -0.3300 -5.7114 -1.2811 27 1 -1.6944 -1.4702 -2.6030 28 1 -3.6988 -1.5070 -4.0144 29 1 -1.8016 -5.7446 -2.3440 30 1 -3.5825 -6.7607 -4.4350 31 1 -4.8641 -6.3431 -3.2499 32 1 -4.5042 -5.3655 -6.1070 33 1 -6.0213 -5.6501 -5.1949 34 1 -0.1965 -1.4347 -1.5437 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239805989.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:12 Heat of formation + Delta-G solvation = 12.112044 kcal Electronic energy + Delta-G solvation = -18899.896204 eV Core-core repulsion = 15955.193567 eV Total energy + Delta-G solvation = -2944.702637 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83181 -38.61392 -36.89650 -34.15114 -32.57504 -31.76463 -30.45400 -29.08258 -27.88328 -25.69815 -23.46994 -22.72753 -22.12265 -20.89666 -20.04088 -17.39399 -17.26878 -16.44062 -16.05647 -15.66311 -15.20103 -14.94110 -14.15963 -13.73831 -13.23476 -13.11567 -12.95068 -12.90234 -12.66852 -12.17978 -12.03657 -11.72735 -11.57096 -11.40927 -11.28598 -11.05932 -10.80398 -10.65895 -10.37702 -9.91622 -9.42563 -8.78446 -8.54856 -8.16224 -7.88332 -7.09068 -6.87742 -4.56087 1.39137 1.66384 2.65087 2.92142 2.98813 3.00937 3.15362 3.42406 3.80436 4.12366 4.50402 4.57698 4.66774 4.95387 5.10219 5.33156 5.45659 5.48725 5.61293 5.68971 5.75540 5.82102 5.87910 6.01994 6.27953 6.41118 6.59864 6.65445 6.70590 6.72118 6.90705 7.00476 7.10228 7.19460 7.45913 7.62968 7.77990 7.86102 8.34585 8.60126 8.63328 9.55843 9.99198 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.005021 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.062896 B = 5575.207261 C = 6589.072221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.450 4.450 8 H 0.084 0.916 9 C 0.062 3.938 10 C -0.018 4.018 11 N -0.469 5.469 12 C -0.027 4.027 13 C -0.087 4.087 14 C -0.033 4.033 15 C -0.079 4.079 16 C -0.133 4.133 17 C 0.081 3.919 18 C -0.176 4.176 19 C -0.071 4.071 20 C -0.108 4.108 21 C 0.052 3.948 22 O -0.310 6.310 23 C -0.119 4.119 24 H 0.285 0.715 25 H 0.127 0.873 26 H 0.121 0.879 27 H 0.139 0.861 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 -4.041 -7.683 11.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.058 3.942 10 C -0.179 4.179 11 N -0.176 5.176 12 C -0.185 4.185 13 C -0.089 4.089 14 C -0.034 4.034 15 C -0.097 4.097 16 C -0.152 4.152 17 C 0.037 3.963 18 C -0.177 4.177 19 C -0.089 4.089 20 C -0.145 4.145 21 C -0.023 4.023 22 O -0.225 6.225 23 C -0.145 4.145 24 H 0.096 0.904 25 H 0.144 0.856 26 H 0.138 0.862 27 H 0.156 0.844 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.472 -4.531 -7.443 11.479 hybrid contribution -0.035 1.448 -0.210 1.464 sum -7.507 -3.083 -7.654 11.155 Atomic orbital electron populations 1.69771 1.07689 1.29859 1.34110 1.25969 0.94796 1.01618 0.91975 0.86287 0.80150 0.79735 0.80202 1.18641 1.20170 1.18774 1.19543 0.98216 0.90830 1.39354 0.89798 1.18458 0.92113 0.93726 0.89905 1.22547 1.02549 0.88046 1.04746 1.66936 1.07762 1.32007 1.10928 1.21751 0.96957 0.95356 1.04414 1.19360 0.94785 0.95529 0.99252 1.18835 0.95288 0.92148 0.97084 1.21123 0.94279 0.98966 0.95319 1.20142 0.96909 0.95158 1.02951 1.19547 0.87651 0.94801 0.94289 1.20579 0.99011 0.94354 1.03708 1.20366 0.93633 0.98214 0.96647 1.21745 0.97577 0.97175 0.97982 1.23740 1.01602 0.79550 0.97388 1.86778 1.38990 1.29599 1.67105 1.21828 0.97881 0.96086 0.98690 0.90389 0.85567 0.86156 0.84380 0.85833 0.85584 0.89356 0.89477 0.90939 0.88077 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.20 10.91 55.55 0.61 -18.59 16 2 C 0.08 1.78 5.18 -17.35 -0.09 1.69 16 3 Si 0.91 17.64 29.59 -169.99 -5.03 12.61 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.45 -11.30 9.08 -37.73 -0.34 -11.64 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.06 1.61 5.59 -106.71 -0.60 1.01 16 10 C -0.02 -0.44 10.96 -16.73 -0.18 -0.62 16 11 N -0.47 -11.55 10.32 -12.28 -0.13 -11.68 16 12 C -0.03 -0.62 10.60 -16.96 -0.18 -0.80 16 13 C -0.09 -2.00 5.88 -104.83 -0.62 -2.61 16 14 C -0.03 -0.65 5.88 -104.84 -0.62 -1.26 16 15 C -0.08 -1.47 9.41 -39.36 -0.37 -1.84 16 16 C -0.13 -2.22 10.05 -39.35 -0.40 -2.62 16 17 C 0.08 1.33 7.04 -38.86 -0.27 1.06 16 18 C -0.18 -2.74 6.26 -104.12 -0.65 -3.39 16 19 C -0.07 -1.22 9.42 -39.39 -0.37 -1.60 16 20 C -0.11 -1.21 7.12 -26.51 -0.19 -1.40 16 21 C 0.05 0.55 8.01 38.05 0.30 0.86 16 22 O -0.31 -4.60 11.10 -20.25 -0.22 -4.82 16 23 C -0.12 -2.97 8.17 -38.23 -0.31 -3.29 16 24 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 25 H 0.13 2.90 8.06 -52.48 -0.42 2.48 16 26 H 0.12 2.42 6.21 -52.48 -0.33 2.09 16 27 H 0.14 2.61 6.27 -52.49 -0.33 2.28 16 28 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 29 H 0.13 2.00 6.23 -52.48 -0.33 1.67 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.13 3.29 4.44 -52.48 -0.23 3.06 16 LS Contribution 289.95 15.07 4.37 4.37 Total: -1.00 -28.11 289.95 -8.59 -36.71 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.30 Total: 7.87 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -4.88 Total: -26.47 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.48 Total: -30.27 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.22 Total: -4.82 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.11 -8.59 -36.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239805989.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.819 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds