Wall clock time and date at job start Mon Mar 30 2020 01:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86802 * 120.00106 * 2 1 4 4 H 1.48506 * 109.47160 * 240.00182 * 3 2 1 5 5 H 1.48500 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47218 * 119.99808 * 3 2 1 7 7 C 1.39939 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99826 * 197.55081 * 7 2 1 9 9 C 1.41436 * 120.00187 * 17.54699 * 7 2 1 10 10 C 1.40801 * 120.60592 * 203.51968 * 9 7 2 11 11 N 1.31492 * 120.67291 * 179.97438 * 10 9 7 12 12 C 1.31943 * 122.11631 * 359.72582 * 11 10 9 13 13 C 1.39683 * 121.14981 * 0.54337 * 12 11 10 14 14 C 1.48387 * 120.41390 * 179.74578 * 13 12 11 15 15 C 1.39390 * 120.24276 * 179.72032 * 14 13 12 16 16 C 1.37673 * 120.22315 * 180.08831 * 15 14 13 17 17 C 1.39413 * 120.40220 * 0.02562 * 16 15 14 18 18 C 1.39003 * 119.06933 * 359.74268 * 17 16 15 19 19 C 1.37518 * 120.90770 * 0.13476 * 18 17 16 20 20 C 1.51673 * 107.03149 * 180.57174 * 18 17 16 21 21 C 1.54698 * 101.92439 * 15.38279 * 20 18 17 22 22 O 1.36160 * 129.74541 * 179.08710 * 17 16 15 23 23 C 1.39186 * 119.17660 * 359.47270 * 13 12 11 24 24 H 0.97000 * 120.00387 * 359.97438 * 1 2 3 25 25 H 1.08007 * 119.66927 * 0.02562 * 10 9 7 26 26 H 1.08004 * 119.42475 * 180.29172 * 12 11 10 27 27 H 1.07999 * 119.88704 * 0.11834 * 15 14 13 28 28 H 1.08012 * 119.79988 * 180.02562 * 16 15 14 29 29 H 1.08003 * 120.06414 * 180.02562 * 19 18 17 30 30 H 1.08995 * 110.94067 * 133.54683 * 20 18 17 31 31 H 1.09009 * 110.93804 * 257.19115 * 20 18 17 32 32 H 1.09000 * 110.74207 * 92.99460 * 21 20 18 33 33 H 1.08994 * 110.74762 * 216.15451 * 21 20 18 34 34 H 1.08003 * 120.95382 * 180.27687 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0502 -1.2338 0.2815 9 6 1.3501 -2.4081 -0.3704 10 6 1.8304 -3.6561 0.0705 11 7 1.2196 -4.7690 -0.2721 12 6 0.1396 -4.7718 -1.0300 13 6 -0.4039 -3.5810 -1.5177 14 6 -1.6159 -3.6035 -2.3735 15 6 -2.1586 -2.4126 -2.8534 16 6 -3.2842 -2.4339 -3.6459 17 6 -3.8921 -3.6443 -3.9757 18 6 -3.3427 -4.8283 -3.4977 19 6 -2.2172 -4.8164 -2.7076 20 6 -4.2010 -5.9616 -4.0265 21 6 -5.0055 -5.2582 -5.1450 22 8 -5.0058 -3.8845 -4.7214 23 6 0.2022 -2.3727 -1.1861 24 1 -0.4851 0.8400 0.0004 25 1 2.7090 -3.6998 0.6972 26 1 -0.3300 -5.7114 -1.2811 27 1 -1.6944 -1.4702 -2.6030 28 1 -3.6988 -1.5070 -4.0144 29 1 -1.8016 -5.7446 -2.3440 30 1 -3.5825 -6.7607 -4.4350 31 1 -4.8641 -6.3431 -3.2499 32 1 -4.5042 -5.3655 -6.1070 33 1 -6.0213 -5.6501 -5.1949 34 1 -0.1965 -1.4347 -1.5437 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239805989.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:12 Heat of formation + Delta-G solvation = -2.723659 kcal Electronic energy + Delta-G solvation = -18900.539528 eV Core-core repulsion = 15955.193567 eV Total energy + Delta-G solvation = -2945.345961 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00525 -40.34019 -38.30390 -35.98396 -33.73931 -33.32137 -32.29234 -30.27892 -29.36688 -27.53827 -24.71293 -24.35564 -23.43336 -22.44199 -21.55346 -19.19513 -18.51741 -17.77270 -17.31423 -17.14473 -16.82823 -16.51952 -15.78348 -15.04555 -14.79326 -14.50396 -14.34662 -14.29602 -13.91110 -13.64553 -13.53608 -13.24609 -13.12108 -12.97643 -12.67026 -12.56552 -12.23835 -11.90892 -11.79191 -11.62935 -11.19679 -10.36207 -10.03646 -9.86721 -9.71592 -8.76297 -8.53619 -6.47277 -0.11161 0.34585 0.91545 1.19045 1.39326 1.50422 1.54995 2.17764 2.33127 2.60913 2.88184 3.46819 3.67544 3.73256 3.87137 3.95144 4.18137 4.21454 4.30588 4.37009 4.51419 4.59485 4.69707 4.81260 4.86117 4.92948 4.93860 5.09549 5.15651 5.24203 5.33456 5.39109 5.51119 5.61529 5.85775 5.89561 6.03132 6.21980 6.47352 6.73523 6.75464 7.66780 8.22357 Molecular weight = 267.10amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.005021 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.062896 B = 5575.207261 C = 6589.072221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.481 4.481 8 H 0.087 0.913 9 C 0.038 3.962 10 C -0.042 4.042 11 N -0.479 5.479 12 C -0.037 4.037 13 C -0.081 4.081 14 C -0.067 4.067 15 C -0.087 4.087 16 C -0.140 4.140 17 C 0.085 3.915 18 C -0.177 4.177 19 C -0.069 4.069 20 C -0.104 4.104 21 C 0.047 3.953 22 O -0.322 6.322 23 C -0.145 4.145 24 H 0.293 0.707 25 H 0.135 0.865 26 H 0.151 0.849 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.005 -4.705 -9.056 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.178 4.178 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.510 4.510 8 H 0.105 0.895 9 C 0.034 3.966 10 C -0.202 4.202 11 N -0.186 5.186 12 C -0.195 4.195 13 C -0.083 4.083 14 C -0.068 4.068 15 C -0.105 4.105 16 C -0.158 4.158 17 C 0.040 3.960 18 C -0.178 4.178 19 C -0.086 4.086 20 C -0.141 4.141 21 C -0.027 4.027 22 O -0.236 6.236 23 C -0.171 4.171 24 H 0.104 0.896 25 H 0.153 0.847 26 H 0.168 0.832 27 H 0.142 0.858 28 H 0.159 0.841 29 H 0.158 0.842 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.153 0.847 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.085 -5.220 -8.819 13.695 hybrid contribution 0.265 1.549 0.103 1.575 sum -8.820 -3.672 -8.715 12.932 Atomic orbital electron populations 1.69822 1.09103 1.31238 1.33956 1.26822 0.95507 1.04669 0.90849 0.85181 0.78787 0.75164 0.80255 1.18371 1.19086 1.18136 1.19839 0.98659 0.91770 1.40760 0.89469 1.18795 0.92846 0.94487 0.90464 1.22710 1.03472 0.88161 1.05903 1.66948 1.08397 1.31874 1.11361 1.22253 0.96648 0.96644 1.03934 1.19643 0.95349 0.94790 0.98532 1.18791 0.95363 0.93856 0.98751 1.21032 0.95190 0.98157 0.96156 1.20261 0.96400 0.96585 1.02590 1.19736 0.87725 0.94804 0.93743 1.21026 0.98294 0.96186 1.02266 1.20469 0.94025 0.97574 0.96578 1.21906 0.97323 0.96298 0.98538 1.24152 1.03875 0.77097 0.97614 1.86777 1.37914 1.32332 1.66607 1.21880 0.98590 0.96777 0.99841 0.89582 0.84705 0.83220 0.85849 0.84119 0.84238 0.86966 0.87915 0.89355 0.84694 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.80 10.91 21.82 0.24 -40.56 16 2 C 0.04 1.84 5.18 85.26 0.44 2.28 16 3 Si 0.99 36.31 29.59 68.60 2.03 38.34 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.48 -25.06 9.08 23.47 0.21 -24.85 16 8 H 0.09 4.30 7.90 -2.91 -0.02 4.28 16 9 C 0.04 2.07 5.59 -21.22 -0.12 1.95 16 10 C -0.04 -2.18 10.96 85.37 0.94 -1.24 16 11 N -0.48 -24.03 10.32 -192.76 -1.99 -26.02 16 12 C -0.04 -1.72 10.60 85.03 0.90 -0.82 16 13 C -0.08 -3.83 5.88 -20.00 -0.12 -3.94 16 14 C -0.07 -2.68 5.88 -20.01 -0.12 -2.80 16 15 C -0.09 -3.33 9.41 22.41 0.21 -3.12 16 16 C -0.14 -4.59 10.05 22.42 0.23 -4.36 16 17 C 0.08 2.60 7.04 22.74 0.16 2.76 16 18 C -0.18 -5.06 6.26 -19.54 -0.12 -5.18 16 19 C -0.07 -2.28 9.42 22.39 0.21 -2.07 16 20 C -0.10 -1.89 7.12 30.74 0.22 -1.67 16 21 C 0.05 0.77 8.01 72.56 0.58 1.35 16 22 O -0.32 -8.49 11.10 -95.37 -1.06 -9.55 16 23 C -0.15 -7.57 8.17 23.14 0.19 -7.38 16 24 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 25 H 0.14 6.48 8.06 -2.91 -0.02 6.45 16 26 H 0.15 5.87 6.21 -2.91 -0.02 5.85 16 27 H 0.12 4.96 6.27 -2.91 -0.02 4.94 16 28 H 0.14 3.99 8.06 -2.90 -0.02 3.97 16 29 H 0.14 4.14 6.23 -2.91 -0.02 4.12 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.61 8.14 -2.38 -0.02 1.60 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.13 6.60 4.44 -2.91 -0.01 6.59 16 Total: -1.00 -62.48 289.95 4.17 -58.32 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 1.14 Total: 28.57 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 3.81 Total: -49.10 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -1.75 Total: -66.57 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.06 Total: -9.55 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -62.48 4.17 -58.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239805989.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.593 kcal (2) G-P(sol) polarization free energy of solvation -62.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds